Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002335

Physical Location & Seq

Genomic Coordinates Forward (+)

2370086 .. 2371557

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGGAAGAAAGGAATGCGGCGGAAGGAAGCAACGCCAGAGCAAGCACGCGGAGAAGACGACGGACATGGTTGAAGAGGAAAGAGAAATGGTTGGTAGTGCTCGGCGTAGTTCTCCACGCCGTTTACATGCTCAGCATCTTCGACATCTACTTCAAGTCCCCCATTGTCCACGGCATCGATCCCGTCACCCCCCGCTTCTCCGCCCCCGCAAAACGCCTCGTTTTGCTCGTCGCTGATGGGCTGAGAGCCGACAAATTCTTCGAGTCGGATTCCGACGGGAACTTCAGAGCGCCGTTTCTGAGAAGCGTGATGATAGAGAAAGGTCGGTGGGGAGTGTCACACGCTCGTCCGCCGACGGAGTCGAGGCCTGGACATGTTGCTATCATTGCTGGGTTCTATGAGGATCCCAGTGCTGTTACGAAAGGGTGGAAAGCTAACCCTGTTGAATTCGATTCGGTTTTTAATCGAAGCCGGCATACTTTCTCTTATGGTAGTCCCGATATAGTCCCCATTTTCTGTGCTGCATTGCCTCACACCACCTGGAATAGTTACCCTCATGAATTTGAAGACTTTGCTACTGATGCTTCCTTTTTGGATGAGTGGTCTTTCGATCGATTTCAGAGCCTTCTGAATCGGTCCAAAGAAGACCAAAAGTTGAAGGAGTTACTCTTACAGGATAATCTTGTTGTGTTTTTGCACTTACTCGGCTGTGACTCAAATGGTCATGCGCATAGGCCTTTTTCGTCCATATATCTCAATAATGTTGCGGTTGTTGATAGTATAGCTGAAAGGGTTTATAATCTTCTGGAAGATTATTACAAGGACAATCGTACTGCATACGTGTTTACTGCTGATCATGGAATGCATGATAAAGGCAGCCATGGAGATGGACATCCTTCAAACACTGATACTCCCCTAGTTGTTTGGGGAGCAGGTGTTAAACATCCGAAGCCAGTCTCCAACCATTCTGATTGCAGTTTTCGTTTTGTCGATCGATCATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Phosphodiest PigN Sulfatase

Protein Analysis

337

Amino Acids

38.11

Weight (kDa)

7.3

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphodiest	PF01663	178 - 291	3.4e-06	Type I phosphodiesterase / nucleotide pyrophosphatase
Sulfatase	PF00884	247 - 323	7.3e-08	Sulfatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01380 AT3G01380
fragaria_vesca	FvH4_6g50180 FvH4_6g50180 FvH4_6g50180
malus_domestica	MD09G1038400.v1.1 MD17G1039500.v1.1
prunus_persica	Prupe.2G019300_v2.0.a1 Prupe.3G279400_v2.0.a1 Prupe.3G279400_v2.0.a1
pyrus_communis	pycom111g03060 pycom17g03550 pycom17g03560
rosa_chinensis	RchiOBHm_Chr2g0170441 RchiOBHm_Chr7g0219531 RchiOBHm_Chr7g0219551 RchiOBHm_Chr7g0219561 RchiOBHm_Chr7g0219571 RchiOBHm_Chr7g0219581
rosa_laevigata	RLG00000002284 RLG00000021957
rosa_multiflora	Rmu_co7962372.1_g000001 Rmu_sc0009395.1_g000013
rosa_roxburghii	Rroxscaffold_2G00081260 Rroxscaffold_2G00081270 Rroxscaffold_3G00239980
rosa_rugosa	Rorug02G0548900 Rorug07G0186100 Rorug07G0186200 Rorug07G0186300
rosa_samantha	Rh2AG620800 Rh2BG631800 Rh2CG601400 Rh2DG644500 Rh7AG330000 Rh7AG330100 Rh7BG319700 Rh7BG319800 Rh7CG347300 Rh7CG347400
rosa_wichuraiana	Rw2G051460 Rw7G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	801
AarI	CACCTGC	1 cut(s)	926
Acc16I	TGCGCA	1 cut(s)	732
Acc36I	ACCTGC	1 cut(s)	926
AccII	CGCG	1 cut(s)	52
AciI	CCGC	9 cut(s)	5, 20, 23, 52, 196, 204, 210, 353, 770
AclWI	GGATC	3 cut(s)	176, 401, 414
AcsI	RAATTY	3 cut(s)	257, 449, 563
AcuI	CTGAAG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	835
AflIII	ACRYGT	2 cut(s)	376, 843
AgsI	TTSAA	6 cut(s)	76, 157, 449, 569, 661, 903
AjnI	CCWGG	2 cut(s)	370, 542
AluBI	AGCT	2 cut(s)	437, 788
AluI	AGCT	2 cut(s)	437, 788
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	964
AlwI	GGATC	3 cut(s)	176, 401, 414
AoxI	GGCC	2 cut(s)	368, 737
ApeKI	GCWGC	2 cut(s)	524, 879
ApoI	RAATTY	3 cut(s)	257, 449, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspLEI	GCGC	2 cut(s)	295, 733
AspS9I	GGNCC	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	463, 495
BbsI	GAAGAC	3 cut(s)	64, 576, 654
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	511, 891
BccI	CCATC	2 cut(s)	233, 884
BceAI	ACGGC	3 cut(s)	107, 190, 280
BciT130I	CCWGG	2 cut(s)	372, 544
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	964
BfaI	CTAG	1 cut(s)	920
BfoI	RGCGCY	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	926
BisI	GCNGC	3 cut(s)	21, 525, 880
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	3 cut(s)	22, 526, 881
Bme1390I	CCNGG	2 cut(s)	372, 544
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	1 cut(s)	639
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	2 cut(s)	372, 544
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	3 cut(s)	147, 186, 574
BmuI	ACTGGG	1 cut(s)	405
BpiI	GAAGAC	3 cut(s)	64, 576, 654
Bpu1102I	GCTNAGC	1 cut(s)	134
Bsa29I	ATCGAT	3 cut(s)	180, 616, 997
BsaAI	YACGTR	1 cut(s)	844
BsaBI	GATNNNNATC	1 cut(s)	894
BsaJI	CCNNGG	2 cut(s)	172, 883
BsaXI	ACNNNNNCTCC	4 cut(s)	898, 924, 928, 954
Bse118I	RCCGGY	1 cut(s)	474
Bse1I	ACTGG	2 cut(s)	411, 956
Bse3DI	GCAATG	2 cut(s)	387, 527
Bse8I	GATNNNNATC	1 cut(s)	894
BseBI	CCWGG	2 cut(s)	372, 544
BseCI	ATCGAT	3 cut(s)	180, 616, 997
BseDI	CCNNGG	2 cut(s)	172, 883
BseGI	GGATG	3 cut(s)	604, 895, 946
BseJI	GATNNNNATC	1 cut(s)	894
BseMI	GCAATG	2 cut(s)	387, 527
BseMII	CTCAG	3 cut(s)	148, 236, 293
BseNI	ACTGG	2 cut(s)	411, 956
BseXI	GCAGC	2 cut(s)	511, 891
BseYI	CCCAGC	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	52
Bsh1285I	CGRYCG	2 cut(s)	616, 997
BshFI	GGCC	2 cut(s)	370, 739
BshVI	ATCGAT	3 cut(s)	180, 616, 997
BsiEI	CGRYCG	2 cut(s)	616, 997
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	475
BslFI	GGGAC	3 cut(s)	145, 483, 494
BsmAI	GTCTC	1 cut(s)	964
BsmFI	GGGAC	3 cut(s)	145, 483, 494
BsmI	GAATGC	2 cut(s)	22, 870
BsnI	GGCC	2 cut(s)	370, 739
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	6 cut(s)	181, 406, 613, 856, 994, 998
Bsp1720I	GCTNAGC	1 cut(s)	134
Bsp19I	CCATGG	1 cut(s)	883
BspACI	CCGC	9 cut(s)	5, 20, 23, 52, 196, 204, 210, 353, 770
BspANI	GGCC	2 cut(s)	370, 739
BspCNI	CTCAG	3 cut(s)	147, 237, 294
BspDI	ATCGAT	3 cut(s)	180, 616, 997
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	1 cut(s)	408
BspMI	ACCTGC	1 cut(s)	926
BspPI	GGATC	3 cut(s)	176, 401, 414
BsrDI	GCAATG	2 cut(s)	387, 527
BsrFI	RCCGGY	1 cut(s)	474
BsrI	ACTGG	2 cut(s)	411, 956
BssAI	RCCGGY	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	172, 883
BssMI	GATC	6 cut(s)	181, 406, 613, 856, 994, 998
BssT1I	CCWWGG	1 cut(s)	883
Bst2UI	CCWGG	2 cut(s)	372, 544
Bst6I	CTCTTC	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	46, 50, 476
BstDEI	CTNAG	3 cut(s)	134, 245, 302
BstDSI	CCRYGG	2 cut(s)	172, 883
BstF5I	GGATG	3 cut(s)	604, 895, 946
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	295, 733
BstKTI	GATC	6 cut(s)	184, 409, 616, 859, 997, 1001
BstMAI	GTCTC	1 cut(s)	964
BstMBI	GATC	6 cut(s)	181, 406, 613, 856, 994, 998
BstMCI	CGRYCG	2 cut(s)	616, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 584
BstNI	CCWGG	2 cut(s)	372, 544
BstNSI	RCATGY	2 cut(s)	133, 380
BstSCI	CCNGG	2 cut(s)	370, 542
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	511, 891
BstV2I	GAAGAC	3 cut(s)	64, 576, 654
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	890
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	3 cut(s)	180, 616, 997
BsuRI	GGCC	2 cut(s)	370, 739
BsuTUI	ATCGAT	3 cut(s)	180, 616, 997
BtgI	CCRYGG	2 cut(s)	172, 883
BtsCI	GGATG	3 cut(s)	604, 895, 946
BtsIMutI	CAGTG	2 cut(s)	418, 906
BveI	ACCTGC	1 cut(s)	926
Cac8I	GCNNGC	3 cut(s)	46, 50, 476
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	2 cut(s)	295, 733
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	639
ClaI	ATCGAT	3 cut(s)	180, 616, 997
Csp6I	GTAC	1 cut(s)	834
CviAII	CATG	9 cut(s)	69, 130, 377, 560, 728, 860, 869, 884, 1008
CviQI	GTAC	1 cut(s)	834
DdeI	CTNAG	3 cut(s)	134, 245, 302
DpnI	GATC	6 cut(s)	183, 408, 615, 858, 996, 1000
DpnII	GATC	6 cut(s)	181, 406, 613, 856, 994, 998
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	4 cut(s)	20, 38, 193, 342
Eco130I	CCWWGG	1 cut(s)	883
Eco147I	AGGCCT	2 cut(s)	370, 739
Eco47I	GGWCC	1 cut(s)	639
Eco57I	CTGAAG	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	370, 542
EcoT14I	CCWWGG	1 cut(s)	883
EcoT22I	ATGCAT	2 cut(s)	870, 1009
ErhI	CCWWGG	1 cut(s)	883
FaeI	CATG	9 cut(s)	72, 133, 380, 563, 731, 863, 872, 887, 1011
FaqI	GGGAC	3 cut(s)	145, 483, 494
FatI	CATG	9 cut(s)	68, 129, 376, 559, 727, 859, 868, 883, 1007
FauI	CCCGC	2 cut(s)	203, 217
FauNDI	CATATG	1 cut(s)	1003
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	3 cut(s)	21, 525, 880
FokI	GGATG	3 cut(s)	611, 882, 933
Fsp4HI	GCNGC	3 cut(s)	21, 525, 880
FspAI	RTGCGCAY	1 cut(s)	732
FspBI	CTAG	1 cut(s)	920
FspI	TGCGCA	1 cut(s)	732
GlaI	GCGC	2 cut(s)	294, 732
GluI	GCNGC	3 cut(s)	21, 525, 880
GsaI	CCCAGC	1 cut(s)	396
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	370, 739
HapII	CCGG	1 cut(s)	475
HhaI	GCGC	2 cut(s)	295, 733
Hin1II	CATG	9 cut(s)	72, 133, 380, 563, 731, 863, 872, 887, 1011
Hin6I	GCGC	2 cut(s)	293, 731
HinP1I	GCGC	2 cut(s)	293, 731
HinfI	GANTC	6 cut(s)	266, 272, 362, 455, 634, 716
HpaII	CCGG	1 cut(s)	475
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	127, 172, 849
Hpy188I	TCNGA	8 cut(s)	271, 277, 290, 303, 624, 633, 951, 973
Hpy188III	TCNNGA	3 cut(s)	500, 560, 809
Hpy8I	GTNNAC	3 cut(s)	127, 172, 849
Hpy99I	CGWCG	4 cut(s)	66, 236, 281, 361
HpyAV	CCTTC	4 cut(s)	20, 638, 655, 909
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	6 cut(s)	527, 700, 839, 868, 978, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 584
HpyF3I	CTNAG	3 cut(s)	134, 245, 302
HpySE526I	ACGT	1 cut(s)	843
Hsp92II	CATG	9 cut(s)	72, 133, 380, 563, 731, 863, 872, 887, 1011
HspAI	GCGC	2 cut(s)	293, 731
KroI	GCCGGC	1 cut(s)	474
KroNI	GCCGGC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	6 cut(s)	181, 406, 613, 856, 994, 998
LmnI	GCTCC	1 cut(s)	932
Lsp1109I	GCAGC	2 cut(s)	511, 891
LweI	GCATC	3 cut(s)	147, 186, 574
MaeI	CTAG	1 cut(s)	920
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	6 cut(s)	187, 339, 418, 551, 666, 713
MalI	GATC	6 cut(s)	183, 408, 615, 858, 996, 1000
MboI	GATC	6 cut(s)	181, 406, 613, 856, 994, 998
MboII	GAAGA	9 cut(s)	20, 69, 88, 133, 253, 581, 659, 797, 824
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	257, 449, 563
MlyI	GAGTC	3 cut(s)	275, 371, 710
MmeI	TCCRAC	3 cut(s)	249, 300, 987
MnlI	CCTC	6 cut(s)	72, 230, 360, 397, 543, 567
Mph1103I	ATGCAT	2 cut(s)	870, 1009
MroNI	GCCGGC	1 cut(s)	474
MseI	TTAA	2 cut(s)	465, 942
MslI	CAYNNNNRTG	2 cut(s)	888, 1006
MspI	CCGG	1 cut(s)	475
MspR9I	CCNGG	2 cut(s)	372, 544
Mva1269I	GAATGC	2 cut(s)	22, 870
MvaI	CCWGG	2 cut(s)	372, 544
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	389, 584
NaeI	GCCGGC	1 cut(s)	476
NcoI	CCATGG	1 cut(s)	883
NdeI	CATATG	1 cut(s)	1003
NdeII	GATC	6 cut(s)	181, 406, 613, 856, 994, 998
NgoMIV	GCCGGC	1 cut(s)	474
NlaIII	CATG	9 cut(s)	72, 133, 380, 563, 731, 863, 872, 887, 1011
NlaIV	GGNNCC	1 cut(s)	408
NmeAIII	GCCGAG	2 cut(s)	84, 687
NmuCI	GTSAC	3 cut(s)	187, 339, 713
NsbI	TGCGCA	1 cut(s)	732
NsiI	ATGCAT	2 cut(s)	870, 1009
NspI	RCATGY	2 cut(s)	133, 380
PagI	TCATGA	1 cut(s)	559
PaqCI	CACCTGC	1 cut(s)	926
PceI	AGGCCT	2 cut(s)	370, 739
PciI	ACATGT	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	2 cut(s)	22, 870
PdiI	GCCGGC	1 cut(s)	476
PfeI	GAWTC	3 cut(s)	272, 455, 634
PflFI	GACNNNGTC	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	22, 526, 881
Ple19I	CGATCG	2 cut(s)	616, 997
PleI	GAGTC	3 cut(s)	274, 370, 710
PpsI	GAGTC	3 cut(s)	274, 370, 710
Ppu21I	YACGTR	1 cut(s)	844
PscI	ACATGT	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	801
Psp6I	CCWGG	2 cut(s)	370, 542
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	370, 542
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	639
PsuI	RGATCY	1 cut(s)	406
PsyI	GACNNNGTC	1 cut(s)	361
PvuI	CGATCG	2 cut(s)	616, 997
RsaI	GTAC	1 cut(s)	835
RsaNI	GTAC	1 cut(s)	834
RseI	CAYNNNNRTG	2 cut(s)	888, 1006
SaqAI	TTAA	2 cut(s)	465, 942
SatI	GCNGC	3 cut(s)	21, 525, 880
Sau3AI	GATC	6 cut(s)	181, 406, 613, 856, 994, 998
Sau96I	GGNCC	1 cut(s)	639
SchI	GAGTC	3 cut(s)	275, 371, 710
ScrFI	CCNGG	2 cut(s)	372, 544
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	6 cut(s)	328, 439, 545, 790, 846, 940
SfaNI	GCATC	3 cut(s)	147, 186, 574
SinI	GGWCC	1 cut(s)	639
SmiMI	CAYNNNNRTG	2 cut(s)	888, 1006
Sse9I	AATT	3 cut(s)	257, 449, 563
SseBI	AGGCCT	2 cut(s)	370, 739
SsiI	CCGC	9 cut(s)	5, 20, 23, 52, 196, 204, 210, 353, 770
SspMI	CTAG	1 cut(s)	920
StuI	AGGCCT	2 cut(s)	370, 739
StyD4I	CCNGG	2 cut(s)	370, 542
StyI	CCWWGG	1 cut(s)	883
TaiI	ACGT	1 cut(s)	846
TaqII	GACCGA	1 cut(s)	627
TasI	AATT	3 cut(s)	257, 449, 563
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	3 cut(s)	272, 455, 634
Tru1I	TTAA	2 cut(s)	465, 942
Tru9I	TTAA	2 cut(s)	465, 942
TscAI	CASTG	2 cut(s)	418, 913
TseFI	GTSAC	3 cut(s)	187, 339, 713
TseI	GCWGC	2 cut(s)	524, 879
Tsp45I	GTSAC	3 cut(s)	187, 339, 713
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	2 cut(s)	79, 374
TspRI	CASTG	2 cut(s)	418, 913
Tth111I	GACNNNGTC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	639
XapI	RAATTY	3 cut(s)	257, 449, 563
XceI	RCATGY	2 cut(s)	133, 380
XspI	CTAG	1 cut(s)	920
Zsp2I	ATGCAT	2 cut(s)	870, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.