Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002335

Physical Location & Seq

Genomic Coordinates Reverse (-)

38125201 .. 38126174

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGAGGGAGAGAGGTAGAAGAAAGCAGCAGAAGCCGGAAAGTAGTGAACTTGAGCGTCAGGAGAAAATGGCTGAAGACGAAAGAGAAATGGCTTGTCGTCGCTGGCGGTCTCCGAGCGGATAAGTTCTTCGCGGCCGGAAAGTTCAGAGCGCCGTTTCTGAGGAGCGTGGTCAAGGAGAGAGGCCGGTGGGGAGTCTCTCATGCTCGGCCGCCGACTCAGTCCAGGCCGGGACACGTGGCGATTATTGCTGGCTTCTATGAGGATCCGAGTGCTGTTACGAAAGGAGATGTAGGTGTTGATGAGATCTGGCATACGTTTTCGTATGGTAGTCCGGATATAGTTCCAATTTTCTGTGCTGCATTGCCTCACACTACTTGGAACAGTTATCCTCATGATTTCGAAGACTTTGCTACTGATGCCTCCTTTCTGGATGAGTGGTCGTTTGATCAATGTCAGAGCCTAATGATTAGGTCCAAGAGGACCCAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Phosphodiest PigN Sulfatase

Protein Analysis

164

Amino Acids

18.58

Weight (kDa)

9.39

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01380 AT3G01380
fragaria_vesca	FvH4_6g50180 FvH4_6g50180 FvH4_6g50180
malus_domestica	MD09G1038400.v1.1 MD17G1039500.v1.1
prunus_persica	Prupe.2G019300_v2.0.a1 Prupe.3G279400_v2.0.a1 Prupe.3G279400_v2.0.a1
pyrus_communis	pycom111g03060 pycom17g03550 pycom17g03560
rosa_chinensis	RchiOBHm_Chr2g0170441 RchiOBHm_Chr7g0219531 RchiOBHm_Chr7g0219551 RchiOBHm_Chr7g0219561 RchiOBHm_Chr7g0219571 RchiOBHm_Chr7g0219581
rosa_laevigata	RLG00000002284 RLG00000021957
rosa_multiflora	Rmu_co7962372.1_g000001 Rmu_sc0009395.1_g000013
rosa_roxburghii	Rroxscaffold_2G00081260 Rroxscaffold_2G00081270 Rroxscaffold_3G00239980
rosa_rugosa	Rorug02G0548900 Rorug07G0186100 Rorug07G0186200 Rorug07G0186300
rosa_samantha	Rh2AG620800 Rh2BG631800 Rh2CG601400 Rh2DG644500 Rh7AG330000 Rh7AG330100 Rh7BG319700 Rh7BG319800 Rh7CG347300 Rh7CG347400
rosa_wichuraiana	Rw2G051460 Rw7G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	4 cut(s)	108, 119, 134, 212
AclWI	GGATC	2 cut(s)	260, 273
AcoI	YGGCCR	2 cut(s)	135, 209
AcuI	CTGAAG	1 cut(s)	95
AcvI	CACGTG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	224
Alw26I	GTCTC	2 cut(s)	116, 202
AlwI	GGATC	2 cut(s)	260, 273
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	4 cut(s)	135, 184, 209, 227
ApeKI	GCWGC	2 cut(s)	27, 359
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	474, 483
AsuC2I	CCSGG	1 cut(s)	231
AsuII	TTCGAA	1 cut(s)	402
AvaII	GGWCC	2 cut(s)	474, 483
BamHI	GGATCC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	238
BbsI	GAAGAC	2 cut(s)	83, 411
BbvI	GCAGC	2 cut(s)	39, 346
BceAI	ACGGC	1 cut(s)	139
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	1 cut(s)	226
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	116, 202
BfoI	RGCGCY	1 cut(s)	155
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	4 cut(s)	28, 135, 212, 360
BlsI	GCNGC	4 cut(s)	29, 136, 213, 361
Bme1390I	CCNGG	2 cut(s)	226, 231
Bme18I	GGWCC	2 cut(s)	474, 483
BmgT120I	GGNCC	2 cut(s)	474, 483
BmiI	GGNNCC	2 cut(s)	267, 485
BmrFI	CCNGG	2 cut(s)	226, 231
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	83, 411
Bpu14I	TTCGAA	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	238
BsaI	GGTCTC	1 cut(s)	116
BsaWI	WCCGGW	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	362
BseAI	TCCGGA	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	152, 233
BseRI	GAGGAG	1 cut(s)	178
BseX3I	CGGCCG	2 cut(s)	135, 209
BseXI	GCAGC	2 cut(s)	39, 346
Bsh1236I	CGCG	1 cut(s)	134
Bsh1285I	CGRYCG	2 cut(s)	138, 212
BshFI	GGCC	4 cut(s)	137, 186, 211, 229
BsiEI	CGRYCG	2 cut(s)	138, 212
BsiSI	CCGG	5 cut(s)	37, 138, 187, 230, 335
BslFI	GGGAC	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	116, 202
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	4 cut(s)	137, 186, 211, 229
Bso31I	GGTCTC	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	3 cut(s)	265, 306, 448
BspACI	CCGC	4 cut(s)	108, 119, 134, 212
BspANI	GGCC	4 cut(s)	137, 186, 211, 229
BspCNI	CTCAG	2 cut(s)	153, 232
BspEI	TCCGGA	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	2 cut(s)	267, 485
BspPI	GGATC	2 cut(s)	260, 273
BspT104I	TTCGAA	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	186
BssMI	GATC	3 cut(s)	265, 306, 448
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	106, 253
BstDEI	CTNAG	2 cut(s)	161, 219
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	268, 309, 451
BstMAI	GTCTC	2 cut(s)	116, 202
BstMBI	GATC	3 cut(s)	265, 306, 448
BstMCI	CGRYCG	2 cut(s)	138, 212
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 248, 419
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	224, 229
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	2 cut(s)	39, 346
BstV2I	GAAGAC	2 cut(s)	83, 411
BstX2I	RGATCY	2 cut(s)	265, 306
BstYI	RGATCY	2 cut(s)	265, 306
BstZI	CGGCCG	2 cut(s)	135, 209
BsuRI	GGCC	4 cut(s)	137, 186, 211, 229
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	106, 253
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	2 cut(s)	474, 483
CseI	GACGC	1 cut(s)	46
CviAII	CATG	2 cut(s)	203, 395
CviJI	RGCY	9 cut(s)	36, 73, 94, 137, 186, 211, 229, 255, 462
CviKI_1	RGCY	9 cut(s)	36, 73, 94, 137, 186, 211, 229, 255, 462
DdeI	CTNAG	2 cut(s)	161, 219
DpnI	GATC	3 cut(s)	267, 308, 450
DpnII	GATC	3 cut(s)	265, 306, 448
EaeI	YGGCCR	2 cut(s)	135, 209
EagI	CGGCCG	2 cut(s)	135, 209
EclXI	CGGCCG	2 cut(s)	135, 209
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	474, 483
Eco52I	CGGCCG	2 cut(s)	135, 209
Eco57I	CTGAAG	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	224
FaeI	CATG	2 cut(s)	206, 398
FaiI	YATR	6 cut(s)	204, 261, 315, 327, 341, 396
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	2 cut(s)	202, 394
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	28, 135, 212, 360
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	4 cut(s)	28, 135, 212, 360
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	4 cut(s)	28, 135, 212, 360
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	4 cut(s)	137, 186, 211, 229
HapII	CCGG	5 cut(s)	37, 138, 187, 230, 335
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	2 cut(s)	206, 398
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	2 cut(s)	195, 217
HpaII	CCGG	5 cut(s)	37, 138, 187, 230, 335
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	5 cut(s)	116, 149, 162, 270, 459
Hpy188III	TCNNGA	4 cut(s)	61, 335, 395, 431
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	2 cut(s)	237, 317
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 248, 419
HpyF3I	CTNAG	2 cut(s)	161, 219
HpySE526I	ACGT	2 cut(s)	237, 317
Hsp92II	CATG	2 cut(s)	206, 398
HspAI	GCGC	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	334
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	265, 306, 448
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	39, 346
LweI	GCATC	1 cut(s)	409
MaeII	ACGT	2 cut(s)	237, 317
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	267, 308, 450
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	3 cut(s)	265, 306, 448
MboII	GAAGA	4 cut(s)	32, 88, 121, 416
MflI	RGATCY	2 cut(s)	265, 306
MluCI	AATT	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	204, 211
MnlI	CCTC	8 cut(s)	7, 156, 176, 256, 378, 402, 433, 474
MroI	TCCGGA	1 cut(s)	334
MspI	CCGG	5 cut(s)	37, 138, 187, 230, 335
MspR9I	CCNGG	2 cut(s)	226, 231
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	3 cut(s)	33, 248, 419
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	265, 306, 448
NlaIII	CATG	2 cut(s)	206, 398
NlaIV	GGNNCC	2 cut(s)	267, 485
NmeAIII	GCCGAG	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	402
PagI	TCATGA	1 cut(s)	394
PflFI	GACNNNGTC	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	29, 136, 213, 361
PleI	GAGTC	2 cut(s)	203, 211
PmaCI	CACGTG	1 cut(s)	238
PmlI	CACGTG	1 cut(s)	238
PpsI	GAGTC	2 cut(s)	203, 211
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	224
PspCI	CACGTG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	267, 485
PspPI	GGNCC	2 cut(s)	474, 483
PspPPI	RGGWCCY	1 cut(s)	483
PsuI	RGATCY	2 cut(s)	265, 306
PsyI	GACNNNGTC	1 cut(s)	220
SatI	GCNGC	4 cut(s)	28, 135, 212, 360
Sau3AI	GATC	3 cut(s)	265, 306, 448
Sau96I	GGNCC	2 cut(s)	474, 483
SchI	GAGTC	2 cut(s)	204, 211
ScrFI	CCNGG	2 cut(s)	226, 231
SetI	ASST	5 cut(s)	18, 240, 298, 320, 476
SfaNI	GCATC	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	402
SinI	GGWCC	2 cut(s)	474, 483
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	4 cut(s)	108, 119, 134, 212
StyD4I	CCNGG	2 cut(s)	224, 229
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	2 cut(s)	240, 320
TaqI	TCGA	1 cut(s)	402
TasI	AATT	1 cut(s)	348
TauI	GCSGC	2 cut(s)	137, 214
TseI	GCWGC	2 cut(s)	27, 359
Tth111I	GACNNNGTC	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	474, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.