Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002335

Physical Location & Seq

Genomic Coordinates Reverse (-)

15680196 .. 15682611

Gene Structure 2416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0186200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAATTATTCAGGCTGCAAAAGGAAATATGACGTGGATGGATACATTTCCCATGTAAAGAGGCTTGGTGCTGCAACCAAGAAGCCCGAAGAAGGCAAGAAGAGAAAAGCTGAAGTCTCTTACTCGGTAAAAAGGCCAAGGAACTCTGCAGTTAGCAGTTGCCTAGTTGGGGCTCTTCAAGTGAATATGCAACACGGTCGTGTTGAGATCATCGCCAATGATCAAGGCAATAGAACAACACCGTCATATATAGCTTTTACCGACAATGGACGTTTGATTGGTGATGCCGCCAAGAACCAAGTCTCCATGAACCCCATTAACACTATTTTTGCATACTTTAATGACTTCCAACGCCAGGCTACAAAAGATGCTGGTATAATTGCAGGTATGAATGTCATGGGCATCATCAATGAGCCTACCGCTACTGCTATTGCCTATGGTCTTGACAAAAAAGGTAGCACTGTTGGTGGAAAGAACGTTCTTATTTTTGATCTTGGTGGTGGCACTTTCGATGTTTCCCTTCTCAAAATTGAAGAGGGAATTTTCGAGGTGCAAGCTACTGCTGGAGATTTCCATCTTGGAGGTGAAGATTTTGACAACCGAATGGTACATCAATTATTGAGGAACTTTTTTAATGGTAAGGAGCTTTGCAAGAGCACCAATCCTGATGAAGCAGTTGCATATGGTGCAGCCGTACAAGCTGCAATTTTGAGCAGCGAGGGAAATATTGAGAAGGTTAAGACTTACTCCAGTTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

Phosphodiest PigN Sulfatase

Protein Analysis

253

Amino Acids

27.49

Weight (kDa)

8.63

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	63 - 110	1.2e-15	Hsp70 protein
HSP70	PF00012	108 - 210	8e-46	Hsp70 protein
HSP70	PF00012	202 - 245	7.3e-10	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01380 AT3G01380
fragaria_vesca	FvH4_6g50180 FvH4_6g50180 FvH4_6g50180
malus_domestica	MD09G1038400.v1.1 MD17G1039500.v1.1
prunus_persica	Prupe.2G019300_v2.0.a1 Prupe.3G279400_v2.0.a1 Prupe.3G279400_v2.0.a1
pyrus_communis	pycom111g03060 pycom17g03550 pycom17g03560
rosa_chinensis	RchiOBHm_Chr2g0170441 RchiOBHm_Chr7g0219531 RchiOBHm_Chr7g0219551 RchiOBHm_Chr7g0219561 RchiOBHm_Chr7g0219571 RchiOBHm_Chr7g0219581
rosa_laevigata	RLG00000002284 RLG00000021957
rosa_multiflora	Rmu_co7962372.1_g000001 Rmu_sc0009395.1_g000013
rosa_roxburghii	Rroxscaffold_2G00081260 Rroxscaffold_2G00081270 Rroxscaffold_3G00239980
rosa_rugosa	Rorug02G0548900 Rorug07G0186100 Rorug07G0186200 Rorug07G0186300
rosa_samantha	Rh2AG620800 Rh2BG631800 Rh2CG601400 Rh2DG644500 Rh7AG330000 Rh7AG330100 Rh7BG319700 Rh7BG319800 Rh7CG347300 Rh7CG347400
rosa_wichuraiana	Rw2G051460 Rw7G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AciI	CCGC	2 cut(s)	288, 420
AclI	AACGTT	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	540
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	609, 696
AfiI	CCNNNNNNNGG	3 cut(s)	92, 169, 355
AgsI	TTSAA	2 cut(s)	179, 533
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	354
AleI	CACNNNNGTG	1 cut(s)	198
AloI	GAACNNNNNNTCC	4 cut(s)	287, 319, 462, 494
AluBI	AGCT	5 cut(s)	110, 254, 557, 646, 701
AluI	AGCT	5 cut(s)	110, 254, 557, 646, 701
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	2 cut(s)	121, 307
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	5 cut(s)	15, 71, 689, 701, 714
ApoI	RAATTY	1 cut(s)	540
AsuHPI	GGTGA	2 cut(s)	293, 596
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	5 cut(s)	2, 58, 688, 701, 726
BccI	CCATC	2 cut(s)	32, 582
BceAI	ACGGC	1 cut(s)	677
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	121, 307
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	16, 72, 288, 690, 702, 715
BlsI	GCNGC	6 cut(s)	17, 73, 289, 691, 703, 716
Bme1390I	CCNGG	1 cut(s)	356
BmgBI	CACGTC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	3 cut(s)	274, 358, 411
BpmI	CTGGAG	2 cut(s)	585, 733
BsaBI	GATNNNNATC	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 169, 355
Bse1I	ACTGG	1 cut(s)	750
Bse8I	GATNNNNATC	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	43, 762
BseJI	GATNNNNATC	1 cut(s)	573
BseLI	CCNNNNNNNGG	3 cut(s)	92, 169, 355
BseNI	ACTGG	1 cut(s)	750
BseXI	GCAGC	5 cut(s)	2, 58, 688, 701, 726
BsgI	GTGCAG	1 cut(s)	708
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	659
BslI	CCNNNNNNNGG	3 cut(s)	92, 169, 355
BsmAI	GTCTC	2 cut(s)	121, 307
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	175, 659
Bsp143I	GATC	3 cut(s)	207, 220, 490
BspACI	CCGC	2 cut(s)	288, 420
BspANI	GGCC	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	374
BspQI	GCTCTTC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	750
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	207, 220, 490
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	197, 243, 463
Bst6I	CTCTTC	3 cut(s)	95, 180, 528
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	555
BstF5I	GGATG	2 cut(s)	43, 762
BstKTI	GATC	3 cut(s)	210, 223, 493
BstMAI	GTCTC	2 cut(s)	121, 307
BstMBI	GATC	3 cut(s)	207, 220, 490
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 698
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	5 cut(s)	2, 58, 688, 701, 726
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	2 cut(s)	43, 762
BtsIMutI	CAGTG	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	555
Csp6I	GTAC	2 cut(s)	608, 695
CviAII	CATG	3 cut(s)	53, 307, 397
CviQI	GTAC	2 cut(s)	608, 695
DpnI	GATC	3 cut(s)	209, 222, 492
DpnII	GATC	3 cut(s)	207, 220, 490
Eam1104I	CTCTTC	3 cut(s)	95, 180, 528
EarI	CTCTTC	3 cut(s)	95, 180, 528
Eco130I	CCWWGG	1 cut(s)	137
Eco24I	GRGCYC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	3 cut(s)	56, 310, 400
FatI	CATG	3 cut(s)	52, 306, 396
FauNDI	CATATG	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	6 cut(s)	16, 72, 288, 690, 702, 715
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	6 cut(s)	16, 72, 288, 690, 702, 715
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	6 cut(s)	16, 72, 288, 690, 702, 715
GsuI	CTGGAG	2 cut(s)	585, 733
HaeIII	GGCC	1 cut(s)	136
Hin1II	CATG	3 cut(s)	56, 310, 400
HphI	GGTGA	2 cut(s)	293, 596
Hpy188III	TCNNGA	2 cut(s)	443, 665
HpyAV	CCTTC	3 cut(s)	86, 530, 727
HpyCH4III	ACNGT	3 cut(s)	197, 243, 463
HpyCH4IV	ACGT	3 cut(s)	33, 271, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 698
HpySE526I	ACGT	3 cut(s)	33, 271, 477
Hsp92II	CATG	3 cut(s)	56, 310, 400
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	207, 220, 490
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	643
LpnPI	CCDG	6 cut(s)	341, 357, 368, 369, 549, 678
Lsp1109I	GCAGC	5 cut(s)	2, 58, 688, 701, 726
LweI	GCATC	3 cut(s)	274, 358, 411
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	3 cut(s)	33, 271, 477
MalI	GATC	3 cut(s)	209, 222, 492
MboI	GATC	3 cut(s)	207, 220, 490
MboII	GAAGA	5 cut(s)	101, 112, 167, 545, 599
MhlI	GDGCHC	2 cut(s)	175, 659
MluCI	AATT	6 cut(s)	4, 378, 528, 540, 614, 705
MmeI	TCCRAC	2 cut(s)	373, 734
MnlI	CCTC	6 cut(s)	54, 529, 541, 575, 615, 712
MseI	TTAA	4 cut(s)	318, 339, 633, 738
MslI	CAYNNNNRTG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	2 cut(s)	686, 698
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	3 cut(s)	207, 220, 490
NlaIII	CATG	3 cut(s)	56, 310, 400
OliI	CACNNNNGTG	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	17, 73, 289, 691, 703, 716
Psp1406I	AACGTT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	151
RsaI	GTAC	2 cut(s)	609, 696
RsaNI	GTAC	2 cut(s)	608, 695
RseI	CAYNNNNRTG	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	4 cut(s)	318, 339, 633, 738
SatI	GCNGC	6 cut(s)	16, 72, 288, 690, 702, 715
Sau3AI	GATC	3 cut(s)	207, 220, 490
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	2 cut(s)	175, 659
SfaNI	GCATC	3 cut(s)	274, 358, 411
SfcI	CTRYAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	198
Sse9I	AATT	6 cut(s)	4, 378, 528, 540, 614, 705
SsiI	CCGC	2 cut(s)	288, 420
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	3 cut(s)	197, 243, 463
TaiI	ACGT	3 cut(s)	36, 274, 480
TaqI	TCGA	2 cut(s)	510, 546
TasI	AATT	6 cut(s)	4, 378, 528, 540, 614, 705
TauI	GCSGC	1 cut(s)	290
Tru1I	TTAA	4 cut(s)	318, 339, 633, 738
Tru9I	TTAA	4 cut(s)	318, 339, 633, 738
TscAI	CASTG	1 cut(s)	466
TseI	GCWGC	5 cut(s)	15, 71, 689, 701, 714
TspDTI	ATGAA	4 cut(s)	17, 323, 404, 684
TspRI	CASTG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	540
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.