RchiOBHm_Chr7g0219561

GPI ethanolamine phosphate transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002335
Physical Location & Seq
Reverse (-)
38120433 .. 38122891
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19650

Sequence Viewer

Length: 723 bp
ATGATTATTTTGATCGGAGCAGCTGGGAGGTTTCTAGATCAGCATACTGAAGGAAACAAGTTTTGGCTTACTATCTGTAATAGTGATGCAAAGAAATCCAAGTTCCCCATGCTCTTTCAATTACAGGTTCTTTTGGTTGGATTATCATCTGTGATGGTGTCAATATCAACATCTCATAGAACAGAGAACCAAGAATTGCATGTCTGGCACCAGATTATAAATTGGTCCATTGCCGGTCCCTCGATGGTACTTCCATTATTTTCAGCAAATGGTCTCTTGTCCCGGCTTACGTCCATATTTCTTGGCTTTGCGCTCACATTTCTTCTATTATCTATCGGATATGAAGCTGTCTTCTATGGTGCTTTTGCTCTTGTACTCATGGCTTGGATACTATTTGAAATCACTCTTATTTACTCAAGTAAGGTGAAAAGGTTGTCAAGTTCCTTTAACAATATGGAGGACGATGCCATAGTTGATGGTCGATACTTGGAGCTGTCTGACATCAGAATTCCTTTAATATTTATGGTCTTGTTTAATGTTGCCTTCTTCGGAACGGGAAATTTTGCAAGTATCGCAAGTTTCGAAATCTCATCAGTCTATCGGTTCATTACTGTCTTCAGCCCTTTTCTTATGGCAGCGTTACTCATCTTCAAGCTATTCATTCCATTTCTGCTTGTCATATGCTTATTCAGTGCAATAACAAAGATGAACCGACTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Phosphodiest PigN Sulfatase

Protein Analysis

240

Amino Acids

27.01

Weight (kDa)

8.58

Isoelectric Point (pI)

27.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PigN PF04987 20 - 239 6.4e-63 Phosphatidylinositolglycan class N (PIG-N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 207
AcsI RAATTY 2 cut(s) 507, 559
AcuI CTGAAG 2 cut(s) 69, 601
AfaI GTAC 2 cut(s) 249, 375
AgsI TTSAA 3 cut(s) 119, 398, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AluBI AGCT 4 cut(s) 23, 347, 493, 655
AluI AGCT 4 cut(s) 23, 347, 493, 655
Alw26I GTCTC 1 cut(s) 278
ApeKI GCWGC 2 cut(s) 20, 635
ApoI RAATTY 2 cut(s) 507, 559
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 225, 236
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 436
AsuII TTCGAA 1 cut(s) 582
AvaII GGWCC 2 cut(s) 225, 236
BanI GGYRCC 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 343, 607
BbvI GCAGC 2 cut(s) 32, 647
BccI CCATC 3 cut(s) 148, 238, 470
BciVI GTATCC 1 cut(s) 381
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 35
BfuI GTATCC 1 cut(s) 381
BisI GCNGC 2 cut(s) 21, 636
BlsI GCNGC 2 cut(s) 22, 637
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 2 cut(s) 225, 236
BmgT120I GGNCC 2 cut(s) 225, 236
BmiI GGNNCC 2 cut(s) 209, 238
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 2 cut(s) 76, 454
BpiI GAAGAC 2 cut(s) 343, 607
Bpu14I TTCGAA 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 400
BpuMI CCSGG 1 cut(s) 283
BsaBI GATNNNNATC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 278
Bse118I RCCGGY 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 228
Bse8I GATNNNNATC 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 145
BseMI GCAATG 1 cut(s) 228
BseXI GCAGC 2 cut(s) 32, 647
BseYI CCCAGC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 234, 283
BslFI GGGAC 2 cut(s) 222, 265
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 222, 265
Bso31I GGTCTC 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 582
Bsp143I GATC 2 cut(s) 12, 37
BspLI GGNNCC 2 cut(s) 209, 238
BspT104I TTCGAA 1 cut(s) 582
BspT107I GGYRCC 1 cut(s) 207
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssMI GATC 2 cut(s) 12, 37
Bst4CI ACNGT 1 cut(s) 613
BstBI TTCGAA 1 cut(s) 582
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 2 cut(s) 15, 40
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 12, 37
BstMWI GCNNNNNNNGC 2 cut(s) 205, 572
BstNSI RCATGY 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 32, 647
BstV2I GAAGAC 2 cut(s) 343, 607
BsuI GTATCC 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 697
CfoI GCGC 1 cut(s) 313
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 225, 236
Csp6I GTAC 2 cut(s) 248, 374
CviAII CATG 4 cut(s) 109, 200, 379, 720
CviJI RGCY 9 cut(s) 23, 67, 286, 306, 347, 383, 493, 621, 655
CviKI_1 RGCY 9 cut(s) 23, 67, 286, 306, 347, 383, 493, 621, 655
CviQI GTAC 2 cut(s) 248, 374
DpnI GATC 2 cut(s) 14, 39
DpnII GATC 2 cut(s) 12, 37
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 225, 236
Eco57I CTGAAG 2 cut(s) 69, 601
EcoRI GAATTC 1 cut(s) 507
FaeI CATG 4 cut(s) 112, 203, 382, 723
FaqI GGGAC 2 cut(s) 222, 265
FatI CATG 4 cut(s) 108, 199, 378, 719
FauNDI CATATG 1 cut(s) 680
Fnu4HI GCNGC 2 cut(s) 21, 636
Fsp4HI GCNGC 2 cut(s) 21, 636
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 312
GluI GCNGC 2 cut(s) 21, 636
GsaI CCCAGC 1 cut(s) 27
HapII CCGG 2 cut(s) 234, 283
HhaI GCGC 1 cut(s) 313
Hin1II CATG 4 cut(s) 112, 203, 382, 723
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HpaII CCGG 2 cut(s) 234, 283
HphI GGTGA 1 cut(s) 436
Hpy188I TCNGA 5 cut(s) 17, 338, 499, 506, 551
Hpy188III TCNNGA 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 44, 553
HpyCH4III ACNGT 1 cut(s) 613
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 4 cut(s) 89, 199, 566, 695
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 572
HpySE526I ACGT 1 cut(s) 290
Hsp92II CATG 4 cut(s) 112, 203, 382, 723
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 2 cut(s) 12, 37
LmnI GCTCC 2 cut(s) 17, 490
LpnPI CCDG 6 cut(s) 9, 110, 190, 224, 247, 296
Lsp1109I GCAGC 2 cut(s) 32, 647
LweI GCATC 2 cut(s) 76, 454
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 639
MalI GATC 2 cut(s) 14, 39
MboI GATC 2 cut(s) 12, 37
MboII GAAGA 5 cut(s) 314, 343, 538, 607, 640
MluCI AATT 5 cut(s) 119, 194, 220, 507, 559
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 21, 250, 451
MseI TTAA 3 cut(s) 447, 515, 534
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 2 cut(s) 234, 283
MspR9I CCNGG 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 205, 572
NciI CCSGG 1 cut(s) 283
NdeI CATATG 1 cut(s) 680
NdeII GATC 2 cut(s) 12, 37
NlaIII CATG 4 cut(s) 112, 203, 382, 723
NlaIV GGNNCC 2 cut(s) 209, 238
NspI RCATGY 1 cut(s) 203
NspV TTCGAA 1 cut(s) 582
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PkrI GCNGC 2 cut(s) 22, 637
PsiI TTATAA 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 209, 238
PspPI GGNCC 2 cut(s) 225, 236
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 2 cut(s) 249, 375
RsaNI GTAC 2 cut(s) 248, 374
SaqAI TTAA 3 cut(s) 447, 515, 534
SatI GCNGC 2 cut(s) 21, 636
Sau3AI GATC 2 cut(s) 12, 37
Sau96I GGNCC 2 cut(s) 225, 236
ScrFI CCNGG 1 cut(s) 283
SetI ASST 9 cut(s) 25, 32, 129, 293, 349, 426, 434, 495, 657
SfaNI GCATC 2 cut(s) 76, 454
SfuI TTCGAA 1 cut(s) 582
SinI GGWCC 2 cut(s) 225, 236
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
Sse9I AATT 5 cut(s) 119, 194, 220, 507, 559
SspI AATATT 1 cut(s) 519
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 613
TaiI ACGT 1 cut(s) 293
TaqI TCGA 3 cut(s) 242, 481, 582
TasI AATT 5 cut(s) 119, 194, 220, 507, 559
TatI WGTACW 1 cut(s) 373
Tru1I TTAA 3 cut(s) 447, 515, 534
Tru9I TTAA 3 cut(s) 447, 515, 534
TscAI CASTG 1 cut(s) 697
TseI GCWGC 2 cut(s) 20, 635
TspDTI ATGAA 4 cut(s) 357, 595, 649, 722
TspRI CASTG 1 cut(s) 697
VpaK11BI GGWCC 2 cut(s) 225, 236
XapI RAATTY 2 cut(s) 507, 559
XbaI TCTAGA 1 cut(s) 34
XceI RCATGY 1 cut(s) 203
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.