RchiOBHm_Chr7g0219531

GPI ethanolamine phosphate transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002335
Physical Location & Seq
Reverse (-)
38052932 .. 38053763
832 bp
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UTR
Exon/CDS
Intron
PRQ19647

Sequence Viewer

Length: 414 bp
ATGGTGTCAATATCAACATCTCATAGAACAGAGAACAAAGAATTGCGTGCCGGTCCCTCGATGGTACTTCCATTATTTTCAGCAAATGGTCTCTTGTCCCGGCTTACGTCCATATTTCTTGGCTTTGCGCCCACATTTCTTCTATTATCTATCGGATATGAAGCTGTCTTCTATGGTGCTTTTGCTCTTGTACTCATGGCTTGGATACTATTTGAAAACACTCTTATTTACTCAAGTAAGGTGAAAAGGTTGTCAAGTTCCTTTAACAATATGGAGGACGATGCCATAGTTGATGGTCGATACTTGGAGCTGTCTGACATCAGAATTCCTTTAATATTTGTATGGTGCTTTGGTTTCTTAAATTATATCTTCATGAATTTTGAATTTTTTTTTCCAATTTGCTTTTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Phosphodiest PigN Sulfatase

Protein Analysis

137

Amino Acids

15.67

Weight (kDa)

5.75

Isoelectric Point (pI)

26.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PigN PF04987 20 - 115 2.1e-20 Phosphatidylinositolglycan class N (PIG-N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 324, 376, 383
AfaI GTAC 2 cut(s) 66, 192
AgsI TTSAA 2 cut(s) 215, 383
AjuI GAANNNNNNNTTGG 1 cut(s) 388
AluBI AGCT 2 cut(s) 164, 310
AluI AGCT 2 cut(s) 164, 310
Alw26I GTCTC 1 cut(s) 95
ApoI RAATTY 3 cut(s) 324, 376, 383
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 160
BccI CCATC 2 cut(s) 55, 287
BciVI GTATCC 1 cut(s) 198
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 50
BsiSI CCGG 2 cut(s) 51, 100
BslFI GGGAC 2 cut(s) 39, 82
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 39, 82
Bso31I GGTCTC 1 cut(s) 95
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 55
BspTNI GGTCTC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 48
BstHHI GCGC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 160
BsuI GTATCC 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 1 cut(s) 372
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 65, 191
CviAII CATG 2 cut(s) 196, 373
CviJI RGCY 5 cut(s) 103, 123, 164, 200, 310
CviKI_1 RGCY 5 cut(s) 103, 123, 164, 200, 310
CviQI GTAC 2 cut(s) 65, 191
Eco31I GGTCTC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 324
FaeI CATG 2 cut(s) 199, 376
FaqI GGGAC 2 cut(s) 39, 82
FatI CATG 2 cut(s) 195, 372
GlaI GCGC 1 cut(s) 129
HapII CCGG 2 cut(s) 51, 100
HhaI GCGC 1 cut(s) 130
Hin1II CATG 2 cut(s) 199, 376
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HpaII CCGG 2 cut(s) 51, 100
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 155, 316, 323
Hpy188III TCNNGA 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 2 cut(s) 199, 376
HspAI GCGC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 2 cut(s) 64, 113
LweI GCATC 1 cut(s) 271
MaeII ACGT 1 cut(s) 107
MboII GAAGA 3 cut(s) 131, 160, 361
MluCI AATT 6 cut(s) 41, 324, 361, 376, 383, 396
MnlI CCTC 2 cut(s) 67, 268
MseI TTAA 3 cut(s) 264, 332, 359
MspI CCGG 2 cut(s) 51, 100
MspR9I CCNGG 1 cut(s) 100
NciI CCSGG 1 cut(s) 100
NlaIII CATG 2 cut(s) 199, 376
NlaIV GGNNCC 1 cut(s) 55
PagI TCATGA 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 2 cut(s) 66, 192
RsaNI GTAC 2 cut(s) 65, 191
SaqAI TTAA 3 cut(s) 264, 332, 359
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 100
SetI ASST 5 cut(s) 110, 166, 243, 251, 312
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 6 cut(s) 41, 324, 361, 376, 383, 396
SspI AATATT 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 98
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 59, 298
TasI AATT 6 cut(s) 41, 324, 361, 376, 383, 396
TatI WGTACW 1 cut(s) 190
Tru1I TTAA 3 cut(s) 264, 332, 359
Tru9I TTAA 3 cut(s) 264, 332, 359
TspDTI ATGAA 3 cut(s) 174, 361, 389
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 3 cut(s) 324, 376, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.