Rorug07G0186300

GPI ethanolamine phosphate transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002335
Physical Location & Seq
Forward (+)
15683718 .. 15685002
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0186300.1

Sequence Viewer

Length: 594 bp
ATGGAGAACAATGATATGGCGCAGAAAGTTGACTGCATGGAGATCGACAAGTCTGACCCTTCTTCTTCTTGGAACGAGACCTCTTTCTCTGCATTCTTCCATGAAAAACAAGATGACAAGTTTGCAAGACATTTGGCCGATGGCCGAGAAACTGAGGTGCAAGAAGCTTGGCCGTTTGTGCAGTGGTTTTTACATGGGCATGGCATTTCATGCACATTGAACACGGCTGGGCGTCGCTTGACAATTTCAACCACCAGAAAGACAATGAATCCAGATACTATAGTCAAGGTTGGGGTTGTTCTTGAACTTATGGCAAGTAATAGAACTAGTATTCCAGCAACCAAGGCAGTAGAAATACTAATGGCAGTGTGCTACATGAAGTCATCAAGACTGGGTTTCACAATGGTGGGCTTTGTGCAAAATTGGTATACGAGAAGGATAATAGGGACTTCAGCTGCAGAATTAAGGTTGTTCAGGTCAGTTGTGGAAGGTTGTTTTCTTAGAAATGAAGATCCTATAACAGTTGCCAGGAGGTTAAAACTGGATCGTAAAGTGTACCGGTTGATGAACAAGGTTCAAGCTTTGTGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Phosphodiest PigN Sulfatase

Protein Analysis

197

Amino Acids

22.52

Weight (kDa)

9.04

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 46 - 120 1.3e-06 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 428
AclWI GGATC 2 cut(s) 506, 552
AcoI YGGCCR 3 cut(s) 135, 142, 170
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 232
AfaI GTAC 1 cut(s) 557
AgeI ACCGGT 1 cut(s) 558
AgsI TTSAA 4 cut(s) 220, 249, 305, 578
AhlI ACTAGT 1 cut(s) 326
AjnI CCWGG 1 cut(s) 527
AleI CACNNNNGTG 1 cut(s) 404
AloI GAACNNNNNNTCC 2 cut(s) 316, 348
AluBI AGCT 3 cut(s) 167, 455, 581
AluI AGCT 3 cut(s) 167, 455, 581
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 506, 552
AoxI GGCC 3 cut(s) 135, 142, 170
ApeKI GCWGC 1 cut(s) 455
AsiGI ACCGGT 1 cut(s) 558
AspLEI GCGC 1 cut(s) 22
BaeI ACNNNNGTAYC 2 cut(s) 267, 300
BbvI GCAGC 1 cut(s) 442
BccI CCATC 1 cut(s) 134
BceAI ACGGC 2 cut(s) 157, 240
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciT130I CCWGG 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 71
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 279, 456
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 529
BmrFI CCNGG 1 cut(s) 529
BmrI ACTGGG 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 401
BsaHI GRCGYC 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 558
Bse118I RCCGGY 1 cut(s) 558
Bse1I ACTGG 2 cut(s) 396, 546
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 396, 546
BseXI GCAGC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 3 cut(s) 137, 144, 172
BshTI ACCGGT 1 cut(s) 558
BsiSI CCGG 1 cut(s) 559
BslFI GGGAC 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 460
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 3 cut(s) 137, 144, 172
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 3 cut(s) 42, 511, 544
BspANI GGCC 3 cut(s) 137, 144, 172
BspCNI CTCAG 1 cut(s) 145
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 2 cut(s) 506, 552
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 558
BsrI ACTGG 2 cut(s) 396, 546
BssAI RCCGGY 1 cut(s) 558
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 3 cut(s) 42, 511, 544
BssNAI GTATAC 1 cut(s) 429
BssNI GRCGYC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 342
Bst1107I GTATAC 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 1 cut(s) 523
BstACI GRCGYC 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 153, 500
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 45, 514, 547
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 42, 511, 544
BstMWI GCNNNNNNNGC 3 cut(s) 178, 210, 344
BstNI CCWGG 1 cut(s) 529
BstSCI CCNGG 1 cut(s) 527
BstSFI CTRYAG 2 cut(s) 279, 456
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BstZ17I GTATAC 1 cut(s) 429
BsuRI GGCC 3 cut(s) 137, 144, 172
BtsI GCAGTG 2 cut(s) 188, 372
BtsIMutI CAGTG 2 cut(s) 188, 372
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 558
CseI GACGC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 556
CspAI ACCGGT 1 cut(s) 558
CviAII CATG 6 cut(s) 37, 101, 194, 200, 210, 376
CviJI RGCY 8 cut(s) 137, 144, 167, 172, 227, 411, 455, 581
CviKI_1 RGCY 8 cut(s) 137, 144, 167, 172, 227, 411, 455, 581
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 2 cut(s) 153, 500
DpnI GATC 3 cut(s) 44, 513, 546
DpnII GATC 3 cut(s) 42, 511, 544
EaeI YGGCCR 3 cut(s) 135, 142, 170
Eco130I CCWWGG 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 6 cut(s) 40, 104, 197, 203, 213, 379
FaqI GGGAC 1 cut(s) 460
FatI CATG 6 cut(s) 36, 100, 193, 199, 209, 375
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 1 cut(s) 456
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 327
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 456
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 3 cut(s) 137, 144, 172
HapII CCGG 1 cut(s) 559
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 22
Hin1I GRCGYC 1 cut(s) 232
Hin1II CATG 6 cut(s) 40, 104, 197, 203, 213, 379
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 2 cut(s) 165, 579
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 559
Hpy166II GTNNAC 3 cut(s) 31, 429, 556
Hpy188I TCNGA 1 cut(s) 55
Hpy188III TCNNGA 3 cut(s) 272, 302, 387
Hpy8I GTNNAC 3 cut(s) 31, 429, 556
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 3 cut(s) 69, 429, 482
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4V TGCA 8 cut(s) 36, 92, 125, 160, 181, 213, 418, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 210, 344
HpyF3I CTNAG 2 cut(s) 153, 500
Hsp92I GRCGYC 1 cut(s) 232
Hsp92II CATG 6 cut(s) 40, 104, 197, 203, 213, 379
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 3 cut(s) 42, 511, 544
Lsp1109I GCAGC 1 cut(s) 442
MaeI CTAG 1 cut(s) 327
MalI GATC 3 cut(s) 44, 513, 546
MboI GATC 3 cut(s) 42, 511, 544
MboII GAAGA 4 cut(s) 54, 57, 88, 521
MflI RGATCY 1 cut(s) 511
MluCI AATT 3 cut(s) 243, 421, 461
MnlI CCTC 3 cut(s) 91, 148, 525
MseI TTAA 2 cut(s) 464, 536
MslI CAYNNNNRTG 2 cut(s) 198, 404
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 559
MspR9I CCNGG 1 cut(s) 529
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 1 cut(s) 529
MwoI GCNNNNNNNGC 3 cut(s) 178, 210, 344
NdeII GATC 3 cut(s) 42, 511, 544
NlaIII CATG 6 cut(s) 40, 104, 197, 203, 213, 379
NmeAIII GCCGAG 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 404
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 268
PinAI ACCGGT 1 cut(s) 558
PkrI GCNGC 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 527
PstI CTGCAG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 2 cut(s) 198, 404
SaqAI TTAA 2 cut(s) 464, 536
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 3 cut(s) 42, 511, 544
ScrFI CCNGG 1 cut(s) 529
SfcI CTRYAG 2 cut(s) 279, 456
SmiMI CAYNNNNRTG 2 cut(s) 198, 404
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 3 cut(s) 243, 421, 461
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 523
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 243, 421, 461
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 2 cut(s) 464, 536
Tru9I TTAA 2 cut(s) 464, 536
TscAI CASTG 2 cut(s) 188, 372
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 6 cut(s) 117, 198, 281, 392, 522, 581
TspRI CASTG 2 cut(s) 188, 372
XmiI GTMKAC 1 cut(s) 428
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.