Rorug07G0186100

GPI ethanolamine phosphate transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002335
Physical Location & Seq
Reverse (-)
15679671 .. 15680057
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0186100.1

Sequence Viewer

Length: 387 bp
ATGAGGGTGAAAGCGCAACAGCCAAAGAGAACAGGTTGTTGGGTACATTTAAGGTCAAAAGGCATCCGTTCTGCTGCAAGGCGAGTTCCTGAGGTTCACGTTATATTTGAGATCGATGCTAATGGAATTTTGGTTGTCTATGCTGACGAAAAACTAACAGGTAATAAAAGCATTATCACTATCATCAATAACAACAAAAATAGGTTATCTAAGGAGGAAATTGAGAAGATGGTCAAGGAGGCAGAGAAATACAAATTAGAAGACCAGGAGTACAAGAATAAGATGGCGGCTAAAATTGCATGGGAAAACTATGCATATGACTTGAGGAACACATCTTCTAATCTCTCAAAGCTCACCAGACAAAAAGAAAATTGTGGATGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
Phosphodiest PigN Sulfatase

Protein Analysis

128

Amino Acids

14.76

Weight (kDa)

9.56

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 20 - 117 8.3e-20 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 287, 381
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 2 cut(s) 45, 272
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 22, 54
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 126
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 19, 346
AxyI CCTNAGG 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 223, 277
BciT130I CCWGG 1 cut(s) 266
BisI GCNGC 2 cut(s) 75, 288
BlsI GCNGC 2 cut(s) 76, 289
Bme1390I CCNGG 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 3 cut(s) 72, 106, 368
BpiI GAAGAC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 114
Bse21I CCTNAGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 114
BseGI GGATG 2 cut(s) 63, 383
BseMII CTCAG 1 cut(s) 81
BseXI GCAGC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 114
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 2 cut(s) 287, 381
BspCNI CTCAG 1 cut(s) 82
BspDI ATCGAT 1 cut(s) 114
BssMI GATC 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 90, 210
BstF5I GGATG 2 cut(s) 63, 383
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 114
BtsCI GGATG 2 cut(s) 63, 383
CfoI GCGC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 2 cut(s) 44, 271
CviAII CATG 1 cut(s) 300
CviJI RGCY 3 cut(s) 22, 290, 352
CviKI_1 RGCY 3 cut(s) 22, 290, 352
CviQI GTAC 2 cut(s) 44, 271
DdeI CTNAG 2 cut(s) 90, 210
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 316
FaeI CATG 1 cut(s) 303
FaiI YATR 6 cut(s) 104, 141, 301, 312, 316, 318
FatI CATG 1 cut(s) 299
FauNDI CATATG 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 75, 288
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 75, 288
GlaI GCGC 1 cut(s) 15
GluI GCNGC 2 cut(s) 75, 288
HhaI GCGC 1 cut(s) 16
Hin1II CATG 1 cut(s) 303
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HphI GGTGA 2 cut(s) 19, 346
Hpy166II GTNNAC 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 77, 299, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 90, 210
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 1 cut(s) 303
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 6 cut(s) 18, 102, 144, 251, 278, 370
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 3 cut(s) 72, 106, 368
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 3 cut(s) 238, 272, 327
MluCI AATT 5 cut(s) 126, 219, 254, 294, 370
MnlI CCTC 4 cut(s) 85, 208, 232, 318
Mph1103I ATGCAT 1 cut(s) 316
MseI TTAA 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeI CATATG 1 cut(s) 316
NdeII GATC 1 cut(s) 111
NlaIII CATG 1 cut(s) 303
NsiI ATGCAT 1 cut(s) 316
PkrI GCNGC 2 cut(s) 76, 289
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
RsaI GTAC 2 cut(s) 45, 272
RsaNI GTAC 2 cut(s) 44, 271
SaqAI TTAA 1 cut(s) 50
SatI GCNGC 2 cut(s) 75, 288
Sau3AI GATC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 266
SetI ASST 7 cut(s) 37, 56, 96, 102, 163, 206, 354
SfaNI GCATC 3 cut(s) 72, 106, 368
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 5 cut(s) 126, 219, 254, 294, 370
SsiI CCGC 2 cut(s) 287, 381
StyD4I CCNGG 1 cut(s) 264
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 114
TasI AATT 5 cut(s) 126, 219, 254, 294, 370
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseI GCWGC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 56
XapI RAATTY 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.