Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002444

Physical Location & Seq

Genomic Coordinates Forward (+)

22935658 .. 22936753

Gene Structure 1096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTTCCTCAATGATTTCCTCCGGTACCGTGGCTACAGTTTCCGCCGACCGCCCAGCCCCCTCTCAAGCCAGAATGGTTGCTCCATTCACCGGCCTCAAGTCCTCCTCAGCTTTCCCTGTCACCAGAAAAAGCAATGACATTACCTCTATTGCAAGCAATGGAGGAAGAGTGCAATGCATGCAGGTGTGGCCTCCACTCGGACTGAAGAAGTTCGAGACCCTCTCTTACCTTCCTCCCCTTTCTACCGAGTCCTTGGCCAAGGAAGTTGACTACCTCCTCCGCAAGAACTGGGTTCCCTGCTTGGAATTTGAGTCCCCAGGATACTATGATGGAAGGTACTGGACAATGTGGAAGCTGCCCATGTTCGGATGCACCGACTCTTCCCAGGTGTTGAAGGAGCTGGAAGAGGCCAAGAAGGCCTACCCCACCTCCTTCATCCGTATCATCGGATTCGACAATGTCCGTCAAGTGCAGTGCATCAGTTTCATCGCTTACAAGCCTCCAGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00630 ko00710 ko01100 ko01120 ko01200 map00630 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

RbcS RuBisCO_small

Protein Analysis

172

Amino Acids

19.04

Weight (kDa)

9.06

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcS	PF12338	2 - 46	2.8e-20	Ribulose-1,5-bisphosphate carboxylase small subunit
RuBisCO_small	PF00101	72 - 168	1.1e-38	Ribulose bisphosphate carboxylase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67090 AT1G67090 AT5G38410 AT5G38410 AT5G38410 AT5G38420 AT5G38430 AT5G38430
fragaria_vesca	FvH4_4g27330 FvH4_6g26030
malus_domestica	MD09G1252100.v1.1 MD16G1042700.v1.1 MD17G1244400.v1.1
prunus_persica	Prupe.1G311400_v2.0.a1 Prupe.3G157200_v2.0.a1 Prupe.3G157200_v2.0.a1
pyrus_communis	pycom09g16870 pycom09g16880 pycom16g03670 pycom17g24720
rosa_chinensis	RchiOBHm_Chr2g0126111 RchiOBHm_Chr4g0435151
rosa_laevigata	RLG00000006615 RLG00000018888
rosa_multiflora	Rmu_co8187892.1_g000001 Rmu_sc0012196.1_g000003 Rmu_ssc0000339.1_g000037
rosa_roxburghii	Rroxscaffold_2G00117430 Rroxscaffold_5G00376370
rosa_rugosa	Rorug02G0261500 Rorug04G0282600
rosa_samantha	Rh2AG318400 Rh2BG326700 Rh2DG344900 Rh2DG346000 Rh4AG338200 Rh4BG346300 Rh4CG360800 Rh4DG340700
rosa_wichuraiana	Rw2G025780 Rw4G029500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
Acc65I	GGTACC	1 cut(s)	26
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	3 cut(s)	45, 52, 283
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	28, 341
AfiI	CCNNNNNNNGG	3 cut(s)	92, 200, 368
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	3 cut(s)	319, 387, 505
AluBI	AGCT	3 cut(s)	113, 358, 403
AluI	AGCT	3 cut(s)	113, 358, 403
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	5 cut(s)	94, 191, 258, 411, 420
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	212
Asp718I	GGTACC	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	3 cut(s)	321, 389, 507
BciVI	GTATCC	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	419
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	3 cut(s)	321, 389, 507
BmiI	GGNNCC	2 cut(s)	28, 297
BmrFI	CCNGG	3 cut(s)	321, 389, 507
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	2 cut(s)	362, 489
BmuI	ACTGGG	1 cut(s)	301
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	51, 83
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	5 cut(s)	30, 255, 261, 319, 387
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	4 cut(s)	156, 186, 416, 446
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 200, 368
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	296, 347
Bse3DI	GCAATG	3 cut(s)	142, 166, 182
BseBI	CCWGG	3 cut(s)	321, 389, 507
BseDI	CCNNGG	5 cut(s)	30, 255, 261, 319, 387
BseGI	GGATG	2 cut(s)	377, 438
BseLI	CCNNNNNNNGG	3 cut(s)	92, 200, 368
BseMI	GCAATG	3 cut(s)	142, 166, 182
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	296, 347
BseRI	GAGGAG	2 cut(s)	97, 269
BseXI	GCAGC	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	494
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	5 cut(s)	96, 193, 260, 413, 422
BshNI	GGYRCC	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	24, 93
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	3 cut(s)	92, 200, 368
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	5 cut(s)	96, 193, 260, 413, 422
Bso31I	GGTCTC	1 cut(s)	212
BspACI	CCGC	3 cut(s)	45, 52, 283
BspANI	GGCC	5 cut(s)	96, 193, 260, 413, 422
BspCNI	CTCAG	1 cut(s)	122
BspLI	GGNNCC	2 cut(s)	28, 297
BspMI	ACCTGC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	3 cut(s)	142, 166, 182
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	296, 347
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	5 cut(s)	30, 255, 261, 319, 387
BssT1I	CCWWGG	2 cut(s)	255, 261
Bst2UI	CCWGG	3 cut(s)	321, 389, 507
Bst4CI	ACNGT	2 cut(s)	31, 40
Bst6I	CTCTTC	3 cut(s)	163, 388, 402
BstAPI	GCANNNNNTGC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	157, 182
BstDEI	CTNAG	1 cut(s)	109
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	377, 438
BstMAI	GTCTC	1 cut(s)	212
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	3 cut(s)	181, 190, 419
BstNI	CCWGG	3 cut(s)	321, 389, 507
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	3 cut(s)	319, 387, 505
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	5 cut(s)	96, 193, 260, 413, 422
BtgI	CCRYGG	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	475
BtsCI	GGATG	2 cut(s)	377, 438
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	1 cut(s)	482
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	157, 182
Cfr10I	RCCGGY	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	27, 340
CviAII	CATG	2 cut(s)	181, 364
CviQI	GTAC	2 cut(s)	27, 340
DdeI	CTNAG	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	3 cut(s)	163, 388, 402
EarI	CTCTTC	3 cut(s)	163, 388, 402
EciI	GGCGGA	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	255, 261
Eco147I	AGGCCT	1 cut(s)	422
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	319, 387, 505
EcoT14I	CCWWGG	2 cut(s)	255, 261
EcoT22I	ATGCAT	1 cut(s)	182
ErhI	CCWWGG	2 cut(s)	255, 261
FaeI	CATG	2 cut(s)	184, 367
FaiI	YATR	3 cut(s)	182, 330, 365
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	2 cut(s)	180, 363
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	2 cut(s)	384, 425
Fsp4HI	GCNGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	359
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	5 cut(s)	96, 193, 260, 413, 422
HapII	CCGG	2 cut(s)	24, 93
Hin1II	CATG	2 cut(s)	184, 367
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	251, 314, 380, 453
HpaII	CCGG	2 cut(s)	24, 93
HphI	GGTGA	2 cut(s)	82, 115
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	203, 371, 452
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	5 cut(s)	242, 330, 391, 412, 445
HpyCH4III	ACNGT	2 cut(s)	31, 40
HpyCH4V	TGCA	7 cut(s)	155, 175, 180, 184, 375, 475, 480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	181, 190, 419
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	184, 367
KpnI	GGTACC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	88, 400
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	2 cut(s)	362, 489
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	4 cut(s)	180, 220, 375, 419
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	1 cut(s)	308
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	3 cut(s)	260, 323, 374
Mox20I	TGGCCA	1 cut(s)	260
Mph1103I	ATGCAT	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	2 cut(s)	24, 93
MspR9I	CCNGG	3 cut(s)	321, 389, 507
MvaI	CCWGG	3 cut(s)	321, 389, 507
MwoI	GCNNNNNNNGC	3 cut(s)	181, 190, 419
NlaIII	CATG	2 cut(s)	184, 367
NlaIV	GGNNCC	2 cut(s)	28, 297
NmuCI	GTSAC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	184
PaqCI	CACCTGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	453
PflFI	GACNNNGTC	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	3 cut(s)	259, 322, 374
PpsI	GAGTC	3 cut(s)	259, 322, 374
Psp6I	CCWGG	3 cut(s)	319, 387, 505
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	3 cut(s)	319, 387, 505
PspN4I	GGNNCC	2 cut(s)	28, 297
PsyI	GACNNNGTC	1 cut(s)	461
RsaI	GTAC	2 cut(s)	28, 341
RsaNI	GTAC	2 cut(s)	27, 340
RseI	CAYNNNNRTG	1 cut(s)	185
SatI	GCNGC	1 cut(s)	359
SchI	GAGTC	3 cut(s)	260, 323, 374
ScrFI	CCNGG	3 cut(s)	321, 389, 507
SfaNI	GCATC	2 cut(s)	362, 489
SfcI	CTRYAG	1 cut(s)	36
SfiI	GGCCNNNNNGGCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	66, 98
SmoI	CTYRAG	2 cut(s)	66, 98
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	1 cut(s)	308
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	3 cut(s)	45, 52, 283
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	319, 387, 505
StyI	CCWWGG	2 cut(s)	255, 261
TaaI	ACNGT	2 cut(s)	31, 40
TaqI	TCGA	2 cut(s)	216, 456
TasI	AATT	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	453
TscAI	CASTG	1 cut(s)	482
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	427, 478
TspGWI	ACGGA	2 cut(s)	431, 455
TspRI	CASTG	1 cut(s)	482
Tth111I	GACNNNGTC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.