pycom17g25200

Peptidase C26

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002132
Physical Location & Seq
Reverse (-)
23355434 .. 23356118
685 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGGAGAAAAGGAGAAAGAAAATTGTTAGAAGTTTCTCAATTGCAAGAAACATATACACAGGAGGCCTAGGAGGTGGTCTCCATCCAATCAAAGAATCTGAACTTGAAGCTGGAGCAGAATTCCTTGAGTCGAACACAGCACTGAGCTTACAGCAGGAGAATAGACTGAAGCAAATGGGTGCAACAGTGAGAAATGCAGGTTCCTATAAACAGAGATTGAAGTTGAATGAGGAGAGAGAAAGAATGGCAAGGAATGTGATGGGGAAAATGTCAGTGGAGCAATTGTCTGATCTGTTGACCTTCTACCATATGATGGGGAAAATCTGTTCTGAAGTGGTGGAAAGAAAGCTGAATGCGATTGTCAATGATATTGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C26

Protein Analysis

127

Amino Acids

14.23

Weight (kDa)

9.67

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 313
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 188, 351
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 3 cut(s) 107, 220, 226
AloI GAACNNNNNNTCC 2 cut(s) 310, 342
AluBI AGCT 3 cut(s) 110, 147, 349
AluI AGCT 3 cut(s) 110, 147, 349
Alw26I GTCTC 1 cut(s) 83
AoxI GGCC 1 cut(s) 64
ApoI RAATTY 1 cut(s) 119
AspA2I CCTAGG 1 cut(s) 67
AvrII CCTAGG 1 cut(s) 67
BccI CCATC 3 cut(s) 90, 253, 307
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 188
BlnI CCTAGG 1 cut(s) 67
BmiI GGNNCC 1 cut(s) 202
BplI GAGNNNNNCTC 2 cut(s) 63, 95
BpmI CTGGAG 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 245
BshFI GGCC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 289
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 3 cut(s) 140, 192, 279
BveI ACCTGC 1 cut(s) 188
CviJI RGCY 4 cut(s) 66, 110, 147, 349
CviKI_1 RGCY 4 cut(s) 66, 110, 147, 349
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 83
Eco57I CTGAAG 2 cut(s) 188, 351
EcoRI GAATTC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 67
FaiI YATR 5 cut(s) 53, 55, 207, 309, 311
FauNDI CATATG 1 cut(s) 309
FokI GGATG 1 cut(s) 69
FspBI CTAG 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 95, 128
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 3 cut(s) 100, 289, 331
Hpy188III TCNNGA 1 cut(s) 378
Hpy8I GTNNAC 1 cut(s) 297
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 3 cut(s) 44, 182, 197
HpyF3I CTNAG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 2 cut(s) 113, 277
LpnPI CCDG 4 cut(s) 45, 96, 140, 183
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MfeI CAATTG 2 cut(s) 39, 281
MluCI AATT 4 cut(s) 21, 39, 119, 281
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 3 cut(s) 56, 65, 223
MunI CAATTG 2 cut(s) 39, 281
Mva1269I GAATGC 1 cut(s) 358
NdeI CATATG 1 cut(s) 309
NdeII GATC 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 202
PceI AGGCCT 1 cut(s) 66
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 95
PflMI CCANNNNNTGG 1 cut(s) 313
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 289
SchI GAGTC 1 cut(s) 137
SetI ASST 6 cut(s) 76, 112, 149, 202, 302, 351
SgeI CNNG 9 cut(s) 57, 72, 80, 116, 123, 137, 167, 210, 261
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 4 cut(s) 21, 39, 119, 281
SseBI AGGCCT 1 cut(s) 66
SspMI CTAG 1 cut(s) 68
StuI AGGCCT 1 cut(s) 66
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 131
TasI AATT 4 cut(s) 21, 39, 119, 281
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 3 cut(s) 147, 192, 279
TspRI CASTG 3 cut(s) 147, 192, 279
Van91I CCANNNNNTGG 1 cut(s) 313
XapI RAATTY 1 cut(s) 119
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.