Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Forward (+)

24232563 .. 24248431

Gene Structure 15869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3339 bp

ATGGCCGATCCTCTGGAGAGGCTGGGATCAGAGGCCGTAGGGAACGAATCGAACATCAAGGACGAACTCTCCATGGAGATCGATCCTCCTTTCAAAGAAAACACCGCCACCGCCGACGACTGGAGAAATGCGCTCAGCAAGGTCGTCCCCGCCGTCGTCGTTCTGCGGACAACCGCCTGTCGTGCTTTTGACACTGAGGCCGCTGGTGCTAGCTATGCCACCGGCTTCATCGTCGATAAGCGCCGCGGGATCATCCTCACCAATCGACATGTTGTCAAGCCTGGACCTGTAGTTGCAGAAGCTATGTTTGTGAACCGTGAGGAAATTCCAGTATATCCTATATACAGGGATCCAGTCCATGATTTTGGCTTCTTTTGTTATGATCCTAGTGCAGTACAATTTCTTAGTTATGAGGAGATTCCTCTGGCCCCTGAGGCTGCTTGTGTTGGACTAGAAATCAGGGTTGTTGGTAATGATAGTGGTGAGAAGGTCTCAATTTTGGCTGGTACTATTGCTCGTTTGGATAGAGATGCTCCACATTACAAAAAGGATGGTTATAATGACTTCAATACCTTCTACATGCAAGCTGCATCTGGTACTAAAGGTGGTTCCAGTGGATCTCCTGTGATTGATTGGCTAGGCAGGGCGGTGGCCTTGAATGCTGGTAGCAAGTCATCAAGTGCTTCAGCTTTTTTCTTACCACTAGAACGAGTTGTGAGGGCATTGAACTATCTCCAGAAAGGCAGAGATTCCTTTGTCAATAAATGGGAGGCAGTCTCTATACCTCGTGGTACGCTTCAGGTGACATTTGTCCATAAAGGATTTGATGAGACACGCCGGCTTGGTCTTCAAAGTGAAACAGAGCAGTTAGTTCGTCATGCATCTCCCGAGGGTGAAACTGGGATGCTGGTTGTTGACTCTGTGGTTCCAGGTGGTCCGGCATACAAGTGTTTGGAGCCAGGTGATGTACTTGTTTGCATGAATGGGAAAGTAATTACCCAATTCCTAAAATTGGAGACTTTACTTGATGACAGTGTCAATCAAAAGATTGAATTACAGATTGAAAGGGGTGGCACACAATTAACTGTTAACTTGACGGTGCAAGATTTACACTCAATAACCCCTAATTACTTCTTGGAAGTAAGTGGTGGAGTGATTCAACCTCTCTCGTACCAACAGGCTAGAAATTTTCGTTTCCCTTGTGGCCTTGTATATGTGACAGAACCAGGATATATGCTCCTTAGAGCTGGAGTTCCTCGCCATGCTATCATTAAGAAGTTTGCTGGTGAGGAAATATCACGACTTGAGGATCTAATCTCAGTTCTATGCAAGCTATCTCGTGGTGCTCGAGTGCCATTAGAGTATATAAGCTACATGGATCGTCATCGAAGGAAGTCAGTCCTGGTCACGGTTGATCGCCATGAATGGTATGCGCCTCCACAGATATACACTCGTGATGATTGTACTGGTCTTTGGACTGCTAAGCCTGTGTTTCAACATGATGGTAATCTACAATCATCTGGTATCAATGAACTCGGAGGTACAGGAAGCCAAGCAGTTCCGCTGAGTAGTGAAGTCACTTCCCTGGTAGACATGCAGCACAATAGCCACGAGCAATTGACTGATGGTGTCACCAGTATGGAAACCAGTTATGAGCACGTATCTGAAGGAGCACATTGTAGGGATGAACTGGATGTTGAAACAAAGAAAAGGCGAGTGAAGGAGGGTTTTCCTGCTGATGGAAATGTTGTTGCTGACTGTTCTTTTCCTGAAGCAAATGACAGTAAGCTGGATGATCCAAATACTATGGAGAATGCTGTTCTGAGAGACTTTGAAGGTGCAAATGTAGCAACTGCTAATGCTTCGTTAGCTGAACGTGTTATAGAGCCGACTCTCGTTATGCTTGAGGTTCATGTGCCACCTTCATGTATGCTTGATGGTGTACATTCACAACATTTTTTCGGGACTGGTGTCATCATCTATCATTCTGAAAACATGGGATTGGTTGCTGTTGACAAGAACACAGTTGCAATAGCTGCATCTGATGTGATGCTTTCATTTGCTGCTTTTCCAATTGAAATTCCTGGCGAGGTGGTTTTTCTCCACCCTGTTCACAATTATGCTCTCATTTCGTATGATCCCTTGGCCCTGGGAACTGTTGGTTCGTCTGCTGTTCGTGCTGCTGAACTACTTCCTGAGCCTGCATTGCGTCGGGGGGATTCTGTGTATCTTGTGGGGTTAAGTAGAAGCCTACAAGCAACATCTAGAAAGTCAATTGTAACTAACCCATGTGCTGCATTAAATATTGGATCTGCTGATTGTCCACGGTACAGAGCAACCAATATGGAAGTCATTGAGCTTGATACTGATTTTGGCAGTACATTTTCTGGTGTACTAACTGATGAGTATGGAAGGGTTCAAGCCATCTGGGGTAGCTTTTCAACTCAGCTAAAATTTGGTGGCAGTAGCTCCGAAGATCATCAGTTTGTTAGAGGTCTCCCTATTTATTCAATCAGTCAAGTCCTAGAAAAAATTATTTCTGGTGCTCAAGGCCCTCCTCTTCTCATAAATCGTGTCAAAAGGCCAATGCCTCTTGTGAGAATTTTAGAGGTTGAACTATATCCTACATTGCTTTCAAAAGCCCGAAGCTTTGGACTGAGTGATGATTGGGTCCAAGCTCTTGTTAAGAAAGATCCGATTAGACGACAAGTTTTACGTGTCAAAGGATGTTTAGCTGGATCTAAAGCCGAAACTCTGTTAGAACAAGGAGACATGGTTTTGGCGATCAATAAGGAGCCGGTTACATGTTTCTCCGATGTCGAAAATGTCTGCCAAGCACTAGATAAAAGTGAAAACAACGATGGCCAGCTTGACATGACCATTTTTCGCCAGGGGCGTGAAATCAATCTTCTTGTGGGAACGGATGTTAGGGATGGAAGTGGTACTACTCGTGTAATAAATTGGTGTGGATGTATCGTTCAGGATCCTCATCCAGCAGTGCGTGCTCTTGGGTTTCTTCCAGATGAAGGTCATGGCGTATATGTCGCGAGGTGGTGTCATGGTAGTCCAGTGCATAGATATGGTCTATATGCTCTTCAGTGGATTGTTGAAGTTAATGGAAAAAAGACTCCTGATTTAGATGCTTTCGTGGATGTAACAAAGGAATTGGAACACGGACAGTTTGTTCGTGTGAGGACAGTCCATCTAAATGGGAAGCCGAGAGTTCTAACATTGAAACAGGACTTGCACTACTGGCCCACATGGGAGTTGAGATTTGATCCTGATTCTGCCATCTGGGGTCGAAAGACGATAAAGGCGCTAGATTATACTAGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

1113

Amino Acids

122.44

Weight (kDa)

5.54

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	73 - 219	2.5e-20	Trypsin-like peptidase domain
PDZ_2	PF13180	298 - 367	1.2e-06	PDZ domain
PDZ_6	PF17820	304 - 356	2.5e-08	PDZ domain
PDZ_1	PF12812	372 - 445	2.1e-13	PDZ-like domain
PDZ_1	PF12812	982 - 1057	3.9e-08	PDZ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AccI	GTMKAC	1 cut(s)	1590
AccII	CGCG	2 cut(s)	246, 3047
AcoI	YGGCCR	2 cut(s)	3, 2863
AcsI	RAATTY	5 cut(s)	324, 1186, 2079, 2453, 2601
AcuI	CTGAAG	5 cut(s)	669, 782, 1686, 1791, 3080
AfiI	CCNNNNNNNGG	5 cut(s)	120, 1012, 1408, 1739, 3026
AflIII	ACRYGT	4 cut(s)	268, 1876, 2716, 2804
AhdI	GACNNNNNGTC	1 cut(s)	272
AhlI	ACTAGT	1 cut(s)	3329
AjnI	CCWGG	9 cut(s)	280, 928, 958, 1225, 1401, 1584, 2083, 2148, 2889
AloI	GAACNNNNNNTCC	4 cut(s)	2961, 2993, 3168, 3200
Alw21I	GWGCWC	5 cut(s)	1348, 1659, 1675, 2548, 3007
Alw26I	GTCTC	7 cut(s)	496, 781, 824, 1010, 1821, 2501, 2763
Ama87I	CYCGRG	2 cut(s)	887, 1347
ApeKI	GCWGC	7 cut(s)	437, 587, 1597, 2036, 2063, 2180, 2294
ApoI	RAATTY	5 cut(s)	324, 1186, 2079, 2453, 2601
ArsI	GACNNNNNNTTYG	2 cut(s)	3168, 3200
Asp700I	GAANNNNTTC	1 cut(s)	2190
AspLEI	GCGC	4 cut(s)	133, 243, 1435, 3319
AspS9I	GGNCC	7 cut(s)	284, 427, 935, 2146, 2552, 2671, 3255
AsuHPI	GGTGA	7 cut(s)	250, 494, 814, 905, 974, 1298, 1624
AsuNHI	GCTAGC	1 cut(s)	209
AvaI	CYCGRG	2 cut(s)	887, 1347
AvaII	GGWCC	3 cut(s)	284, 935, 2671
AxyI	CCTNAGG	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	2865
BamHI	GGATCC	2 cut(s)	349, 2983
BarI	GAAGNNNNNNTAC	2 cut(s)	2929, 2961
BauI	CACGAG	5 cut(s)	786, 1338, 1452, 1610, 2949
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	5 cut(s)	1348, 1659, 1675, 2548, 3007
BbvI	GCAGC	7 cut(s)	424, 574, 1609, 2023, 2050, 2167, 2281
BceAI	ACGGC	2 cut(s)	20, 137
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
BcoDI	GTCTC	7 cut(s)	496, 781, 824, 1010, 1821, 2501, 2763
BcuI	ACTAGT	1 cut(s)	3329
BfmI	CTRYAG	1 cut(s)	288
BfoI	RGCGCY	2 cut(s)	244, 3320
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	9 cut(s)	201, 244, 438, 588, 1598, 2037, 2064, 2181, 2295
BlpI	GCTNAGC	2 cut(s)	134, 1482
BlsI	GCNGC	9 cut(s)	202, 245, 439, 589, 1599, 2038, 2065, 2182, 2296
Bme1390I	CCNGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
Bme18I	GGWCC	3 cut(s)	284, 935, 2671
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmeT110I	CYCGRG	2 cut(s)	887, 1347
BmgT120I	GGNCC	7 cut(s)	284, 427, 935, 2146, 2552, 2671, 3255
BmiI	GGNNCC	8 cut(s)	351, 429, 610, 927, 957, 2672, 2796, 2985
BmrFI	CCNGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
BmrI	ACTGGG	1 cut(s)	909
BmsI	GCATC	7 cut(s)	520, 599, 890, 894, 2040, 2048, 3130
BmtI	GCTAGC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	909
BoxI	GACNNNNGTC	2 cut(s)	809, 1970
BpiI	GAAGAC	1 cut(s)	839
BplI	GAGNNNNNCTC	4 cut(s)	476, 508, 761, 793
BpmI	CTGGAG	4 cut(s)	35, 142, 719, 1269
Bpu10I	CCTNAGC	1 cut(s)	2196
Bpu1102I	GCTNAGC	2 cut(s)	134, 1482
BpuEI	CTTGAG	3 cut(s)	1325, 1925, 2532
Bsa29I	ATCGAT	1 cut(s)	81
BsaAI	YACGTR	2 cut(s)	1660, 2717
BsaBI	GATNNNNATC	3 cut(s)	1383, 1506, 2988
BsaI	GGTCTC	2 cut(s)	496, 2501
BsaJI	CCNNGG	9 cut(s)	72, 244, 888, 1584, 2142, 2148, 2149, 2324, 2890
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 2760, 2790
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 1012, 1408, 1739, 3026
Bse118I	RCCGGY	3 cut(s)	221, 837, 2797
Bse21I	CCTNAGG	1 cut(s)	432
Bse3DI	GCAATG	2 cut(s)	2204, 2627
Bse8I	GATNNNNATC	3 cut(s)	1383, 1506, 2988
BseBI	CCWGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	9 cut(s)	72, 244, 888, 1584, 2142, 2148, 2149, 2324, 2890
BseJI	GATNNNNATC	3 cut(s)	1383, 1506, 2988
BseLI	CCNNNNNNNGG	5 cut(s)	120, 1012, 1408, 1739, 3026
BseMI	GCAATG	2 cut(s)	2204, 2627
BseMII	CTCAG	9 cut(s)	148, 186, 423, 1332, 1556, 1814, 2187, 2459, 2648
BseRI	GAGGAG	2 cut(s)	428, 2547
BseXI	GCAGC	7 cut(s)	424, 574, 1609, 2023, 2050, 2167, 2281
BseYI	CCCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	2 cut(s)	246, 3047
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	5 cut(s)	1348, 1659, 1675, 2548, 3007
BsiHKCI	CYCGRG	2 cut(s)	887, 1347
BsiSI	CCGG	4 cut(s)	222, 838, 938, 2798
BslFI	GGGAC	2 cut(s)	131, 1978
BslI	CCNNNNNNNGG	5 cut(s)	120, 1012, 1408, 1739, 3026
BsmAI	GTCTC	7 cut(s)	496, 781, 824, 1010, 1821, 2501, 2763
BsmFI	GGGAC	2 cut(s)	131, 1978
BsmI	GAATGC	2 cut(s)	664, 1819
Bso31I	GGTCTC	2 cut(s)	496, 2501
BsoBI	CYCGRG	2 cut(s)	887, 1347
Bsp1286I	GDGCHC	5 cut(s)	1348, 1659, 1675, 2548, 3007
Bsp1407I	TGTACA	1 cut(s)	1942
Bsp1720I	GCTNAGC	2 cut(s)	134, 1482
Bsp19I	CCATGG	1 cut(s)	72
Bsp68I	TCGCGA	1 cut(s)	3047
BspCNI	CTCAG	9 cut(s)	147, 187, 424, 1331, 1557, 1815, 2188, 2458, 2649
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	2 cut(s)	246, 3047
BspLI	GGNNCC	8 cut(s)	351, 429, 610, 927, 957, 2672, 2796, 2985
BspOI	GCTAGC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	3099
BspTNI	GGTCTC	2 cut(s)	496, 2501
BsrDI	GCAATG	2 cut(s)	2204, 2627
BsrFI	RCCGGY	3 cut(s)	221, 837, 2797
BsrGI	TGTACA	1 cut(s)	1942
BssAI	RCCGGY	3 cut(s)	221, 837, 2797
BssECI	CCNNGG	9 cut(s)	72, 244, 888, 1584, 2142, 2148, 2149, 2324, 2890
BssSI	CACGAG	5 cut(s)	786, 1338, 1452, 1610, 2949
BssT1I	CCWWGG	2 cut(s)	72, 2142
Bst2BI	CACGAG	5 cut(s)	786, 1338, 1452, 1610, 2949
Bst2UI	CCWGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
Bst6I	CTCTTC	2 cut(s)	2565, 3099
BstAPI	GCANNNNNTGC	2 cut(s)	2036, 3002
BstAUI	TGTACA	1 cut(s)	1942
BstBAI	YACGTR	2 cut(s)	1660, 2717
BstC8I	GCNNGC	7 cut(s)	211, 585, 839, 1331, 2202, 2867, 3003
BstDSI	CCRYGG	3 cut(s)	72, 244, 2324
BstFNI	CGCG	2 cut(s)	246, 3047
BstH2I	RGCGCY	2 cut(s)	244, 3320
BstHHI	GCGC	4 cut(s)	133, 243, 1435, 3319
BstMAI	GTCTC	7 cut(s)	496, 781, 824, 1010, 1821, 2501, 2763
BstNI	CCWGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
BstNSI	RCATGY	4 cut(s)	272, 583, 1597, 2808
BstPAI	GACNNNNGTC	2 cut(s)	809, 1970
BstSCI	CCNGG	9 cut(s)	280, 928, 958, 1225, 1401, 1584, 2083, 2148, 2889
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	2 cut(s)	246, 3047
BstV1I	GCAGC	7 cut(s)	424, 574, 1609, 2023, 2050, 2167, 2281
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	7 cut(s)	349, 617, 1309, 2309, 2692, 2738, 2983
BstXI	CCANNNNNNTGG	2 cut(s)	365, 3209
BstYI	RGATCY	7 cut(s)	349, 617, 1309, 2309, 2692, 2738, 2983
Bsu15I	ATCGAT	1 cut(s)	81
Bsu36I	CCTNAGG	1 cut(s)	432
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	3 cut(s)	72, 244, 2324
BtsI	GCAGTG	1 cut(s)	3003
BtsIMutI	CAGTG	6 cut(s)	192, 619, 1039, 3003, 3075, 3104
BtuMI	TCGCGA	1 cut(s)	3047
Cac8I	GCNNGC	7 cut(s)	211, 585, 839, 1331, 2202, 2867, 3003
CfoI	GCGC	4 cut(s)	133, 243, 1435, 3319
Cfr10I	RCCGGY	3 cut(s)	221, 837, 2797
Cfr13I	GGNCC	7 cut(s)	284, 427, 935, 2146, 2552, 2671, 3255
Cfr42I	CCGCGG	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	81
CseI	GACGC	1 cut(s)	2198
DriI	GACNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	3, 2863
Eam1104I	CTCTTC	2 cut(s)	2565, 3099
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	2 cut(s)	2565, 3099
Eco130I	CCWWGG	2 cut(s)	72, 2142
Eco31I	GGTCTC	2 cut(s)	496, 2501
Eco47I	GGWCC	3 cut(s)	284, 935, 2671
Eco57I	CTGAAG	5 cut(s)	669, 782, 1686, 1791, 3080
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	2 cut(s)	887, 1347
EcoO109I	RGGNCCY	1 cut(s)	2552
EcoRII	CCWGG	9 cut(s)	280, 928, 958, 1225, 1401, 1584, 2083, 2148, 2889
EcoT14I	CCWWGG	2 cut(s)	72, 2142
EcoT22I	ATGCAT	1 cut(s)	883
ErhI	CCWWGG	2 cut(s)	72, 2142
FaqI	GGGAC	2 cut(s)	131, 1978
FauI	CCCGC	2 cut(s)	157, 239
FblI	GTMKAC	1 cut(s)	1590
Fnu4HI	GCNGC	9 cut(s)	201, 244, 438, 588, 1598, 2037, 2064, 2181, 2295
Fsp4HI	GCNGC	9 cut(s)	201, 244, 438, 588, 1598, 2037, 2064, 2181, 2295
GlaI	GCGC	4 cut(s)	132, 242, 1434, 3318
GluI	GCNGC	9 cut(s)	201, 244, 438, 588, 1598, 2037, 2064, 2181, 2295
GsaI	CCCAGC	1 cut(s)	26
GsuI	CTGGAG	4 cut(s)	35, 142, 719, 1269
HaeII	RGCGCY	2 cut(s)	244, 3320
HapII	CCGG	4 cut(s)	222, 838, 938, 2798
HgaI	GACGC	1 cut(s)	2198
HhaI	GCGC	4 cut(s)	133, 243, 1435, 3319
Hin6I	GCGC	4 cut(s)	131, 241, 1433, 3317
HinP1I	GCGC	4 cut(s)	131, 241, 1433, 3317
HincII	GTYRAC	3 cut(s)	916, 1090, 2014
HindII	GTYRAC	3 cut(s)	916, 1090, 2014
HindIII	AAGCTT	1 cut(s)	2647
HinfI	GANTC	9 cut(s)	47, 418, 749, 917, 1156, 1891, 2219, 3127, 3284
HpaI	GTTAAC	1 cut(s)	1090
HpaII	CCGG	4 cut(s)	222, 838, 938, 2798
HphI	GGTGA	7 cut(s)	250, 494, 814, 905, 974, 1298, 1624
Hpy166II	GTNNAC	9 cut(s)	313, 916, 1090, 1591, 1943, 2014, 2113, 2324, 2393
Hpy188I	TCNGA	9 cut(s)	31, 1538, 1666, 1824, 1990, 2044, 2473, 2697, 2815
Hpy8I	GTNNAC	9 cut(s)	313, 916, 1090, 1591, 1943, 2014, 2113, 2324, 2393
Hpy99I	CGWCG	5 cut(s)	119, 158, 161, 236, 2214
HpyAV	CCTTC	9 cut(s)	481, 583, 1383, 1661, 1714, 1829, 1932, 2406, 3020
HpyCH4IV	ACGT	3 cut(s)	1659, 1876, 2716
HpySE526I	ACGT	3 cut(s)	1659, 1876, 2716
HspAI	GCGC	4 cut(s)	131, 241, 1433, 3317
KroI	GCCGGC	1 cut(s)	837
KroNI	GCCGGC	1 cut(s)	839
KspAI	GTTAAC	1 cut(s)	1090
KspI	CCGCGG	1 cut(s)	247
LguI	GCTCTTC	1 cut(s)	3099
LmnI	GCTCC	6 cut(s)	538, 955, 1242, 1670, 2474, 2794
Lsp1109I	GCAGC	7 cut(s)	424, 574, 1609, 2023, 2050, 2167, 2281
LweI	GCATC	7 cut(s)	520, 599, 890, 894, 2040, 2048, 3130
MaeII	ACGT	3 cut(s)	1659, 1876, 2716
MaeIII	GTNAC	8 cut(s)	802, 1216, 1405, 1576, 1630, 2278, 2800, 3154
MboII	GAAGA	6 cut(s)	839, 2486, 2552, 2900, 3008, 3086
MfeI	CAATTG	3 cut(s)	1616, 2073, 2274
MflI	RGATCY	7 cut(s)	349, 617, 1309, 2309, 2692, 2738, 2983
MhlI	GDGCHC	5 cut(s)	1348, 1659, 1675, 2548, 3007
MlsI	TGGCCA	1 cut(s)	2865
MluNI	TGGCCA	1 cut(s)	2865
MlyI	GAGTC	3 cut(s)	911, 1885, 3121
MmeI	TCCRAC	1 cut(s)	427
Mox20I	TGGCCA	1 cut(s)	2865
Mph1103I	ATGCAT	1 cut(s)	883
MroNI	GCCGGC	1 cut(s)	837
MroXI	GAANNNNTTC	1 cut(s)	2190
MscI	TGGCCA	1 cut(s)	2865
MseI	TTAA	7 cut(s)	1082, 1089, 1272, 2240, 2300, 2685, 3114
MslI	CAYNNNNRTG	6 cut(s)	946, 1637, 1924, 2118, 3078, 3207
Msp20I	TGGCCA	1 cut(s)	2865
MspA1I	CMGCKG	3 cut(s)	203, 246, 1564
MspI	CCGG	4 cut(s)	222, 838, 938, 2798
MspR9I	CCNGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
MunI	CAATTG	3 cut(s)	1616, 2073, 2274
Mva1269I	GAATGC	2 cut(s)	664, 1819
MvaI	CCWGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
MvnI	CGCG	2 cut(s)	246, 3047
NaeI	GCCGGC	1 cut(s)	839
NcoI	CCATGG	1 cut(s)	72
NgoMIV	GCCGGC	1 cut(s)	837
NheI	GCTAGC	1 cut(s)	209
NlaIV	GGNNCC	8 cut(s)	351, 429, 610, 927, 957, 2672, 2796, 2985
NmeAIII	GCCGAG	1 cut(s)	3243
NmuCI	GTSAC	5 cut(s)	802, 1216, 1405, 1576, 1630
NruI	TCGCGA	1 cut(s)	3047
NsiI	ATGCAT	1 cut(s)	883
NspI	RCATGY	4 cut(s)	272, 583, 1597, 2808
PaeR7I	CTCGAG	1 cut(s)	1347
PasI	CCCWGGG	1 cut(s)	2149
PciI	ACATGT	2 cut(s)	268, 2804
PciSI	GCTCTTC	1 cut(s)	3099
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 1345, 2893
PctI	GAATGC	2 cut(s)	664, 1819
PdiI	GCCGGC	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	2190
PfeI	GAWTC	6 cut(s)	47, 418, 749, 1156, 2219, 3284
PflFI	GACNNNGTC	1 cut(s)	1034
PkrI	GCNGC	9 cut(s)	202, 245, 439, 589, 1599, 2038, 2065, 2182, 2296
PleI	GAGTC	3 cut(s)	911, 1885, 3121
PpsI	GAGTC	3 cut(s)	911, 1885, 3121
Ppu21I	YACGTR	2 cut(s)	1660, 2717
PscI	ACATGT	2 cut(s)	268, 2804
PshAI	GACNNNNGTC	2 cut(s)	809, 1970
PsiI	TTATAA	1 cut(s)	558
Psp6I	CCWGG	9 cut(s)	280, 928, 958, 1225, 1401, 1584, 2083, 2148, 2889
PspFI	CCCAGC	1 cut(s)	22
PspGI	CCWGG	9 cut(s)	280, 928, 958, 1225, 1401, 1584, 2083, 2148, 2889
PspN4I	GGNNCC	8 cut(s)	351, 429, 610, 927, 957, 2672, 2796, 2985
PspPI	GGNCC	7 cut(s)	284, 427, 935, 2146, 2552, 2671, 3255
PspXI	VCTCGAGB	1 cut(s)	1347
PsuI	RGATCY	7 cut(s)	349, 617, 1309, 2309, 2692, 2738, 2983
PsyI	GACNNNGTC	1 cut(s)	1034
RruI	TCGCGA	1 cut(s)	3047
RseI	CAYNNNNRTG	6 cut(s)	946, 1637, 1924, 2118, 3078, 3207
SacII	CCGCGG	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	3099
SaqAI	TTAA	7 cut(s)	1082, 1089, 1272, 2240, 2300, 2685, 3114
SatI	GCNGC	9 cut(s)	201, 244, 438, 588, 1598, 2037, 2064, 2181, 2295
Sau96I	GGNCC	7 cut(s)	284, 427, 935, 2146, 2552, 2671, 3255
SchI	GAGTC	3 cut(s)	911, 1885, 3121
ScrFI	CCNGG	9 cut(s)	282, 930, 960, 1227, 1403, 1586, 2085, 2150, 2891
SduI	GDGCHC	5 cut(s)	1348, 1659, 1675, 2548, 3007
SfaNI	GCATC	7 cut(s)	520, 599, 890, 894, 2040, 2048, 3130
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	1347
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	3 cut(s)	284, 935, 2671
SlaI	CTCGAG	1 cut(s)	1347
SmiMI	CAYNNNNRTG	6 cut(s)	946, 1637, 1924, 2118, 3078, 3207
SmlI	CTYRAG	4 cut(s)	1304, 1347, 1904, 2547
SmoI	CTYRAG	4 cut(s)	1304, 1347, 1904, 2547
SpeI	ACTAGT	1 cut(s)	3329
SspI	AATATT	1 cut(s)	2305
StyD4I	CCNGG	9 cut(s)	280, 928, 958, 1225, 1401, 1584, 2083, 2148, 2889
StyI	CCWWGG	2 cut(s)	72, 2142
TaiI	ACGT	3 cut(s)	1662, 1879, 2719
TaqI	TCGA	8 cut(s)	50, 81, 234, 265, 1348, 1387, 2820, 3301
TatI	WGTACW	6 cut(s)	394, 967, 1463, 1942, 2378, 2392
TauI	GCSGC	2 cut(s)	203, 246
TfiI	GAWTC	6 cut(s)	47, 418, 749, 1156, 2219, 3284
Tru1I	TTAA	7 cut(s)	1082, 1089, 1272, 2240, 2300, 2685, 3114
Tru9I	TTAA	7 cut(s)	1082, 1089, 1272, 2240, 2300, 2685, 3114
TscAI	CASTG	6 cut(s)	199, 619, 1039, 3003, 3075, 3104
TseFI	GTSAC	5 cut(s)	802, 1216, 1405, 1576, 1630
TseI	GCWGC	7 cut(s)	437, 587, 1597, 2036, 2063, 2180, 2294
Tsp45I	GTSAC	5 cut(s)	802, 1216, 1405, 1576, 1630
TspDTI	ATGAA	9 cut(s)	217, 995, 1437, 1545, 1701, 1901, 1914, 2046, 3039
TspGWI	ACGGA	2 cut(s)	2936, 3189
TspRI	CASTG	6 cut(s)	199, 619, 1039, 3003, 3075, 3104
Tth111I	GACNNNGTC	1 cut(s)	1034
VpaK11BI	GGWCC	3 cut(s)	284, 935, 2671
XapI	RAATTY	5 cut(s)	324, 1186, 2079, 2453, 2601
XbaI	TCTAGA	1 cut(s)	2264
XceI	RCATGY	4 cut(s)	272, 583, 1597, 2808
XhoI	CTCGAG	1 cut(s)	1347
XmiI	GTMKAC	1 cut(s)	1590
XmnI	GAANNNNTTC	1 cut(s)	2190
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.