pycom17g26760

Condensin complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0006579
Physical Location & Seq
Forward (+)
25053412 .. 25055793
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1533 bp
ATGCACTGCCTTGCTGTTTTCGGCCTTTGCTTGGAGAAGGCAAGGTCATATCATTGGATTCAAGGGAAAGCTATTGAGCCTACTGAACTACTGCAATCGTTATTGCTTCCAGCGGCAAAACATTCTCACTTGGAAGTCCAAAGGATTGCAGTCAGGTGTCTTGGGCTTTTTGGGTTGTTAGAGAAAAAGCCAAGCCAGGAACTAGTAAAGCAGTTAAAGCTTTCATTTATTAAGGGACCAGGTCCAATTAGCATAGGTGCTTGCAAGGCATTATTTGATCTTGGGATGTGGCATAATCCTCAGGAAGTTGATAGGGTGATGGGCGGCTCACCACAATGTCAAGATTATGATATAACTTCTAGTCCTTTAAACCTTTCTGATACAGATGGGATATCGAACATTAAATTGCTAGATCTTTTGTATGCTGGAATCATGAAAGATGATTGGGACAATTCTTTAGCAAGTGATGAAAATGAGTCGATTCATTGTGCTCTTGGTGAGGGGTTTGCGAAAATTCTTCTTCTAAGTGAGAATTACCAAGGCATGCCTGCTTCTTTACATCCATTACTTTTATCCAAGCTCATTACCTTGTACTTCAGCAATGAATCTAAAGACTTGCAGAGGTTGAAACAGTGTTTATCTGTGTTCTTTGAGAATTACCCTTCCCTCGCAGTTAATCACAAGAAGTGTATATCCAAGGCTTTCCTTCCAGTCATGCGTTCTATGTGGCCGGGTATCAATGGCACTGCTGGAGGTTCTGCTACCGTGGTTTCTAATATGCGTAAGCGTGCAGTCCAAGTATCACTTTTTATGCTGCACATCATGCAGGCTCCCTTGTATAAAAATGGGACAGAGAAAGGAAATGATACCGGGGAACTACCAGAAGTGATAGAAGAACCTCCACTTGAGTGTGGTGAGGAGGGGCTTGCCATACGCATAGCCGCAGAGGTTGCTACTTTCGGTACAAAGAAGACACCTGCAGAGAAGGCATATGTGTCGGCATTATGCAGAGTACTTGTCATGCTTCATTTCCGGTTATCAGAGCAAGAGGCAATCCAGTTAATGAGGAGGCTTTTAATTCGTGTGGTCGAATCTGTATCAGCAGAGAAAGATCTTGTCAAAGAGTTAAGGCGGATGGCTGACCATCTCAAGGCACAAGATAGGCATCCAGATCAGGAAATGTCGCAAGATCAAGCTAATCTTATATTTGGTAAGTTAGAACTAGAGTTCAACTTGGATTTCAATGTTTCTGTTGAAATGCCGCAAACCCCAGCTCCTCGCTCAACCAAACCAGCCCGTTCCAGAAGACGAGTGGCGCTTGAAGAGGCATCTTCTGATGATGAAGATAGTTCTCCCACCTCGGTGGTTCCTAATAATCTTGTCAAAATAAGCGCTCGCTCACAGAGAGCAAGCAAGACTGCAGCACTATCGAAGATGACTGCTAATAAAGCCTTGAGGATCCATGAAGATGATGAAGAGGAGGAAGAAGGCTCGGAGGTTACATCTGATGAAGACTCAGATGGACCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd3

Protein Analysis

511

Amino Acids

56.55

Weight (kDa)

5.59

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd3 PF12719 2 - 344 1.2e-51 Nuclear condensing complex subunits, C-term domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 985
Acc36I ACCTGC 1 cut(s) 985
AciI CCGC 5 cut(s) 113, 324, 942, 1132, 1262
AclWI GGATC 2 cut(s) 1453, 1466
AcoI YGGCCR 1 cut(s) 728
AcsI RAATTY 1 cut(s) 513
AcuI CTGAAG 1 cut(s) 580
AfaI GTAC 3 cut(s) 593, 964, 1014
AfeI AGCGCT 1 cut(s) 1393
AfiI CCNNNNNNNGG 2 cut(s) 31, 1150
AgsI TTSAA 6 cut(s) 62, 628, 1231, 1243, 1256, 1322
AhlI ACTAGT 1 cut(s) 202
AjnI CCWGG 2 cut(s) 195, 238
AleI CACNNNNGTG 2 cut(s) 907, 1361
AluBI AGCT 5 cut(s) 71, 220, 580, 1196, 1274
AluI AGCT 5 cut(s) 71, 220, 580, 1196, 1274
Alw21I GWGCWC 1 cut(s) 493
AlwI GGATC 2 cut(s) 1453, 1466
Aor51HI AGCGCT 1 cut(s) 1393
AoxI GGCC 2 cut(s) 22, 728
ApeKI GCWGC 2 cut(s) 814, 1421
ApoI RAATTY 1 cut(s) 513
AspLEI GCGC 2 cut(s) 1318, 1394
AspS9I GGNCC 3 cut(s) 236, 242, 1523
AsuC2I CCSGG 2 cut(s) 732, 871
AsuHPI GGTGA 4 cut(s) 321, 328, 509, 926
AvaII GGWCC 3 cut(s) 236, 242, 1523
AxyI CCTNAGG 1 cut(s) 300
BamHI GGATCC 1 cut(s) 1458
BbsI GAAGAC 3 cut(s) 977, 1312, 1518
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 2 cut(s) 801, 1433
BccI CCATC 5 cut(s) 313, 380, 1129, 1152, 1514
BcgI CGANNNNNNTGC 4 cut(s) 978, 1012, 1410, 1444
BciT130I CCWGG 2 cut(s) 197, 240
BcnI CCSGG 2 cut(s) 732, 871
BcuI ACTAGT 1 cut(s) 202
BfaI CTAG 4 cut(s) 203, 360, 410, 1223
BfmI CTRYAG 2 cut(s) 978, 1419
BfoI RGCGCY 2 cut(s) 1319, 1395
BfuAI ACCTGC 1 cut(s) 985
BglII AGATCT 2 cut(s) 412, 1111
BisI GCNGC 6 cut(s) 114, 325, 815, 942, 1262, 1422
BlsI GCNGC 6 cut(s) 115, 326, 816, 943, 1263, 1423
BmcAI AGTACT 1 cut(s) 1014
Bme1390I CCNGG 4 cut(s) 197, 240, 732, 871
Bme18I GGWCC 3 cut(s) 236, 242, 1523
BmgT120I GGNCC 3 cut(s) 236, 242, 1523
BmiI GGNNCC 4 cut(s) 237, 831, 1368, 1460
BmrFI CCNGG 4 cut(s) 197, 240, 732, 871
BmsI GCATC 2 cut(s) 1174, 1337
BpiI GAAGAC 3 cut(s) 977, 1312, 1518
BpmI CTGGAG 1 cut(s) 771
BpuEI CTTGAG 3 cut(s) 926, 1133, 1474
BpuMI CCSGG 2 cut(s) 732, 871
BsaBI GATNNNNATC 1 cut(s) 1164
BsaJI CCNNGG 5 cut(s) 538, 696, 765, 870, 1359
BsaWI WCCGGW 1 cut(s) 1032
BsaXI ACNNNNNCTCC 2 cut(s) 1258, 1288
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 1150
Bse1I ACTGG 2 cut(s) 710, 1057
Bse21I CCTNAGG 1 cut(s) 300
Bse3DI GCAATG 1 cut(s) 607
Bse8I GATNNNNATC 1 cut(s) 1164
BseBI CCWGG 2 cut(s) 197, 240
BseDI CCNNGG 5 cut(s) 538, 696, 765, 870, 1359
BseGI GGATG 4 cut(s) 291, 559, 1140, 1165
BseJI GATNNNNATC 1 cut(s) 1164
BseLI CCNNNNNNNGG 2 cut(s) 31, 1150
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 2 cut(s) 314, 1530
BseNI ACTGG 2 cut(s) 710, 1057
BseRI GAGGAG 4 cut(s) 932, 1081, 1266, 1493
BseXI GCAGC 2 cut(s) 801, 1433
BseYI CCCAGC 1 cut(s) 1270
BsgI GTGCAG 2 cut(s) 800, 810
BshFI GGCC 2 cut(s) 24, 730
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 3 cut(s) 731, 870, 1033
BslFI GGGAC 3 cut(s) 249, 461, 862
BslI CCNNNNNNNGG 2 cut(s) 31, 1150
BsmFI GGGAC 3 cut(s) 249, 461, 862
BsnI GGCC 2 cut(s) 24, 730
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 6 cut(s) 277, 412, 1111, 1171, 1189, 1458
BspACI CCGC 5 cut(s) 113, 324, 942, 1132, 1262
BspANI GGCC 2 cut(s) 24, 730
BspCNI CTCAG 2 cut(s) 313, 1529
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 4 cut(s) 237, 831, 1368, 1460
BspMAI CTGCAG 2 cut(s) 982, 1423
BspMI ACCTGC 1 cut(s) 985
BspPI GGATC 2 cut(s) 1453, 1466
BsrDI GCAATG 1 cut(s) 607
BsrI ACTGG 2 cut(s) 710, 1057
BssECI CCNNGG 5 cut(s) 538, 696, 765, 870, 1359
BssMI GATC 6 cut(s) 277, 412, 1111, 1171, 1189, 1458
BssT1I CCWWGG 2 cut(s) 538, 696
Bst2UI CCWGG 2 cut(s) 197, 240
Bst4CI ACNGT 2 cut(s) 633, 766
Bst6I CTCTTC 2 cut(s) 1317, 1470
BstAPI GCANNNNNTGC 2 cut(s) 823, 950
BstC8I GCNNGC 8 cut(s) 262, 545, 549, 789, 828, 927, 1396, 1411
BstDEI CTNAG 3 cut(s) 300, 524, 1516
BstDSI CCRYGG 1 cut(s) 765
BstF5I GGATG 4 cut(s) 291, 559, 1140, 1165
BstH2I RGCGCY 2 cut(s) 1319, 1395
BstHHI GCGC 2 cut(s) 1318, 1394
BstKTI GATC 6 cut(s) 280, 415, 1114, 1174, 1192, 1461
BstMBI GATC 6 cut(s) 277, 412, 1111, 1171, 1189, 1458
BstMWI GCNNNNNNNGC 6 cut(s) 217, 266, 823, 950, 986, 1448
BstNI CCWGG 2 cut(s) 197, 240
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 4 cut(s) 195, 238, 730, 869
BstSFI CTRYAG 2 cut(s) 978, 1419
BstV1I GCAGC 2 cut(s) 801, 1433
BstV2I GAAGAC 3 cut(s) 977, 1312, 1518
BstX2I RGATCY 3 cut(s) 412, 1111, 1458
BstXI CCANNNNNNTGG 1 cut(s) 1363
BstYI RGATCY 3 cut(s) 412, 1111, 1458
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 2 cut(s) 24, 730
BtgI CCRYGG 1 cut(s) 765
BtsCI GGATG 4 cut(s) 291, 559, 1140, 1165
BtsI GCAGTG 2 cut(s) 4, 744
BtsIMutI CAGTG 3 cut(s) 4, 638, 744
BveI ACCTGC 1 cut(s) 985
Cac8I GCNNGC 8 cut(s) 262, 545, 549, 789, 828, 927, 1396, 1411
CciI TCATGA 1 cut(s) 432
CfoI GCGC 2 cut(s) 1318, 1394
Cfr13I GGNCC 3 cut(s) 236, 242, 1523
CsiI ACCWGGT 1 cut(s) 238
Csp6I GTAC 3 cut(s) 592, 963, 1013
CviAII CATG 6 cut(s) 433, 544, 715, 823, 1021, 1463
CviQI GTAC 3 cut(s) 592, 963, 1013
DdeI CTNAG 3 cut(s) 300, 524, 1516
DpnI GATC 6 cut(s) 279, 414, 1113, 1173, 1191, 1460
DpnII GATC 6 cut(s) 277, 412, 1111, 1171, 1189, 1458
DraI TTTAAA 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 728
Eam1104I CTCTTC 2 cut(s) 1317, 1470
EarI CTCTTC 2 cut(s) 1317, 1470
EciI GGCGGA 1 cut(s) 1147
Eco130I CCWWGG 2 cut(s) 538, 696
Eco32I GATATC 1 cut(s) 393
Eco47I GGWCC 3 cut(s) 236, 242, 1523
Eco47III AGCGCT 1 cut(s) 1393
Eco57I CTGAAG 1 cut(s) 580
Eco81I CCTNAGG 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 195, 238
EcoRV GATATC 1 cut(s) 393
EcoT14I CCWWGG 2 cut(s) 538, 696
ErhI CCWWGG 2 cut(s) 538, 696
FaeI CATG 6 cut(s) 436, 547, 718, 826, 1024, 1466
FalI AAGNNNNNCTT 4 cut(s) 789, 821, 1185, 1217
FaqI GGGAC 3 cut(s) 249, 461, 862
FatI CATG 6 cut(s) 432, 543, 714, 822, 1020, 1462
FauNDI CATATG 1 cut(s) 991
Fnu4HI GCNGC 6 cut(s) 114, 325, 815, 942, 1262, 1422
FokI GGATG 4 cut(s) 298, 546, 1147, 1152
Fsp4HI GCNGC 6 cut(s) 114, 325, 815, 942, 1262, 1422
FspBI CTAG 4 cut(s) 203, 360, 410, 1223
GlaI GCGC 2 cut(s) 1317, 1393
GluI GCNGC 6 cut(s) 114, 325, 815, 942, 1262, 1422
GsaI CCCAGC 1 cut(s) 1274
GsuI CTGGAG 1 cut(s) 771
HaeII RGCGCY 2 cut(s) 1319, 1395
HaeIII GGCC 2 cut(s) 24, 730
HapII CCGG 3 cut(s) 731, 870, 1033
HhaI GCGC 2 cut(s) 1318, 1394
Hin1II CATG 6 cut(s) 436, 547, 718, 826, 1024, 1466
Hin6I GCGC 2 cut(s) 1316, 1392
HinP1I GCGC 2 cut(s) 1316, 1392
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 7 cut(s) 58, 429, 476, 481, 605, 1091, 1514
HpaII CCGG 3 cut(s) 731, 870, 1033
HphI GGTGA 4 cut(s) 321, 328, 509, 926
Hpy188I TCNGA 6 cut(s) 379, 1042, 1336, 1495, 1507, 1519
Hpy188III TCNNGA 6 cut(s) 302, 341, 433, 1169, 1175, 1302
HpyAV CCTTC 5 cut(s) 31, 672, 716, 979, 1481
HpyCH4III ACNGT 2 cut(s) 633, 766
HpyF10VI GCNNNNNNNGC 6 cut(s) 217, 266, 823, 950, 986, 1448
HpyF3I CTNAG 3 cut(s) 300, 524, 1516
Hsp92II CATG 6 cut(s) 436, 547, 718, 826, 1024, 1466
HspAI GCGC 2 cut(s) 1316, 1392
Kzo9I GATC 6 cut(s) 277, 412, 1111, 1171, 1189, 1458
LmnI GCTCC 2 cut(s) 835, 1279
Lsp1109I GCAGC 2 cut(s) 801, 1433
LweI GCATC 2 cut(s) 1174, 1337
MabI ACCWGGT 1 cut(s) 238
MaeI CTAG 4 cut(s) 203, 360, 410, 1223
MaeIII GTNAC 1 cut(s) 1498
MalI GATC 6 cut(s) 279, 414, 1113, 1173, 1191, 1460
MboI GATC 6 cut(s) 277, 412, 1111, 1171, 1189, 1458
MflI RGATCY 3 cut(s) 412, 1111, 1458
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 7 cut(s) 246, 404, 451, 513, 532, 655, 1077
MlyI GAGTC 2 cut(s) 485, 1508
MseI TTAA 8 cut(s) 215, 231, 368, 402, 675, 1061, 1076, 1127
MslI CAYNNNNRTG 4 cut(s) 334, 907, 1361, 1467
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 3 cut(s) 731, 870, 1033
MspR9I CCNGG 4 cut(s) 197, 240, 732, 871
MvaI CCWGG 2 cut(s) 197, 240
MwoI GCNNNNNNNGC 6 cut(s) 217, 266, 823, 950, 986, 1448
NciI CCSGG 2 cut(s) 732, 871
NdeI CATATG 1 cut(s) 991
NdeII GATC 6 cut(s) 277, 412, 1111, 1171, 1189, 1458
NlaIII CATG 6 cut(s) 436, 547, 718, 826, 1024, 1466
NlaIV GGNNCC 4 cut(s) 237, 831, 1368, 1460
NspI RCATGY 1 cut(s) 547
OliI CACNNNNGTG 2 cut(s) 907, 1361
PaeI GCATGC 1 cut(s) 547
PagI TCATGA 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 985
PfeI GAWTC 5 cut(s) 58, 429, 481, 605, 1091
PflFI GACNNNGTC 1 cut(s) 240
PkrI GCNGC 6 cut(s) 115, 326, 816, 943, 1263, 1423
PleI GAGTC 2 cut(s) 484, 1508
PpsI GAGTC 2 cut(s) 484, 1508
Psp6I CCWGG 2 cut(s) 195, 238
PspFI CCCAGC 1 cut(s) 1270
PspGI CCWGG 2 cut(s) 195, 238
PspN4I GGNNCC 4 cut(s) 237, 831, 1368, 1460
PspPI GGNCC 3 cut(s) 236, 242, 1523
PstI CTGCAG 2 cut(s) 982, 1423
PsuI RGATCY 3 cut(s) 412, 1111, 1458
PsyI GACNNNGTC 1 cut(s) 240
RsaI GTAC 3 cut(s) 593, 964, 1014
RsaNI GTAC 3 cut(s) 592, 963, 1013
RseI CAYNNNNRTG 4 cut(s) 334, 907, 1361, 1467
SaqAI TTAA 8 cut(s) 215, 231, 368, 402, 675, 1061, 1076, 1127
SatI GCNGC 6 cut(s) 114, 325, 815, 942, 1262, 1422
Sau3AI GATC 6 cut(s) 277, 412, 1111, 1171, 1189, 1458
Sau96I GGNCC 3 cut(s) 236, 242, 1523
ScaI AGTACT 1 cut(s) 1014
SchI GAGTC 2 cut(s) 485, 1508
ScrFI CCNGG 4 cut(s) 197, 240, 732, 871
SduI GDGCHC 1 cut(s) 493
SexAI ACCWGGT 1 cut(s) 238
SfaNI GCATC 2 cut(s) 1174, 1337
SfcI CTRYAG 2 cut(s) 978, 1419
SinI GGWCC 3 cut(s) 236, 242, 1523
SmiMI CAYNNNNRTG 4 cut(s) 334, 907, 1361, 1467
SmlI CTYRAG 3 cut(s) 905, 1148, 1453
SmoI CTYRAG 3 cut(s) 905, 1148, 1453
SpeI ACTAGT 1 cut(s) 202
SphI GCATGC 1 cut(s) 547
Sse9I AATT 7 cut(s) 246, 404, 451, 513, 532, 655, 1077
SsiI CCGC 5 cut(s) 113, 324, 942, 1132, 1262
SspMI CTAG 4 cut(s) 203, 360, 410, 1223
StyD4I CCNGG 4 cut(s) 195, 238, 730, 869
StyI CCWWGG 2 cut(s) 538, 696
TaaI ACNGT 2 cut(s) 633, 766
TaqI TCGA 4 cut(s) 395, 479, 1089, 1430
TasI AATT 7 cut(s) 246, 404, 451, 513, 532, 655, 1077
TatI WGTACW 2 cut(s) 591, 1012
TauI GCSGC 4 cut(s) 116, 327, 944, 1264
TfiI GAWTC 5 cut(s) 58, 429, 481, 605, 1091
Tru1I TTAA 8 cut(s) 215, 231, 368, 402, 675, 1061, 1076, 1127
Tru9I TTAA 8 cut(s) 215, 231, 368, 402, 675, 1061, 1076, 1127
TscAI CASTG 2 cut(s) 638, 751
TseI GCWGC 2 cut(s) 814, 1421
TspRI CASTG 2 cut(s) 638, 751
Tth111I GACNNNGTC 1 cut(s) 240
VpaK11BI GGWCC 3 cut(s) 236, 242, 1523
XapI RAATTY 1 cut(s) 513
XceI RCATGY 1 cut(s) 547
XcmI CCANNNNNNNNNTGG 1 cut(s) 1309
XspI CTAG 4 cut(s) 203, 360, 410, 1223
ZrmI AGTACT 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.