pycom17g26980

expansin-A13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010451
Physical Location & Seq
Forward (+)
25239479 .. 25241785
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1053 bp
ATGTCTTTTGGTATTTTGGTTTACCTGCAAGTGAGATATTTGATGAGAATTGAACATGTTATTACTAATCATTTGAAAGAAAAAAAAAAAAAAAGTTTTTATCTTTCCGTCTTTACCAGCAGCTGCAGTCACTTTGTCTCTCTTTCTCTGGGTCACTCTCTTACTCACACTAATCCTTCAAGAAGAAAGCGAATTAATAACACCGACAACAAAAAGCCGACGACATTCAAACAAACAAGCCCAGAAATGTGGCCGGCAGCTCTCCCCCTGCTCCTCCTCTTCCTCCTCCCACTCGCGCTCACCTCCACCGCCCTCTCCCACTTCCACTCCTCCTCCTCTTCCTCCCCCACCGCTTCCTCCTCCCTCTACGACTGGAGCTCCGCACGCGCCACCTACTATGCCGCCTCTGACCCCCGCGACAAGGTCGGCGGCGCGTGCGGCTACGGAAACCTCGAGAAGGCCGGGTACGGGCTGGCGACGGTGGGGCTGAGCGAGGCGCTGTTCGAGCGGGGCCAGATCTGTGGCGCATGCTTCGAGGTCCGGTGCGTGGAGGACACCCGGTGGTGCATTCCGGGGACGTCGATCATCGTGACGGCGACCAACTTCTGCGCACCGAATTACGGACTCATGGCGGAGGGTGGGGGCCACTGCAACTCTCCGAACAAGCACTTGGTGTTGCCCATCGAGGCCTTTGAGAAGATCGCTGTTTGGAAGGCTGGCAATATGGCCGTCCAGTATCGCAGGATCAAGTGTAGAAAGGAAGGAGGAATTCGTTTCACCATAGATGGTTCTAACATCTTTATATCAGTACTCATCAGCAATGTTGCTGGTGCTGGAGACATAGTTGCGGTGAAGGTCAAGGGTTCAAGAACCGGTTGGCTTCCAATGGGACGGAATTGGGGCCAAAACTGGCATGTAAGTGCTGATTTACTGAACCAACCTCTTTCTTTCGAGGTCACAAGCAGTGATGGCCGCACAGTTACATCTTACAATGTTGCTCCCAAGGCTTGGAACTTTGGGCAGACCTTTGAAGGAAAGCAGTTTGAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

351

Amino Acids

38.44

Weight (kDa)

9.36

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 161 - 246 5.8e-17 Lytic transglycolase
Expansin_C PF01357 257 - 334 1.4e-29 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 581
Acc16I TGCGCA 1 cut(s) 610
Acc36I ACCTGC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 1008
AccBSI CCGCTC 1 cut(s) 508
AccII CGCG 4 cut(s) 296, 387, 417, 434
AclWI GGATC 1 cut(s) 752
AcoI YGGCCR 3 cut(s) 251, 726, 970
AcsI RAATTY 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 578
AdeI CACNNNGTG 2 cut(s) 561, 673
AfaI GTAC 2 cut(s) 467, 810
AfiI CCNNNNNNNGG 6 cut(s) 421, 457, 468, 547, 620, 1008
AflIII ACRYGT 1 cut(s) 55
AgeI ACCGGT 1 cut(s) 872
AgsI TTSAA 6 cut(s) 53, 76, 180, 229, 867, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 653, 685
AluBI AGCT 3 cut(s) 123, 260, 378
AluI AGCT 3 cut(s) 123, 260, 378
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 2 cut(s) 142, 831
AlwI GGATC 1 cut(s) 752
AlwNI CAGNNNCTG 1 cut(s) 123
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 8 cut(s) 251, 459, 511, 643, 687, 726, 901, 970
ApeKI GCWGC 3 cut(s) 120, 123, 257
ApoI RAATTY 1 cut(s) 768
AseI ATTAAT 1 cut(s) 195
AsiGI ACCGGT 1 cut(s) 872
AspLEI GCGC 6 cut(s) 298, 389, 434, 499, 527, 611
AspS9I GGNCC 4 cut(s) 511, 538, 643, 901
AsuC2I CCSGG 3 cut(s) 463, 559, 573
AsuHPI GGTGA 3 cut(s) 292, 769, 862
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 538
BanII GRGCYC 1 cut(s) 380
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 3 cut(s) 110, 132, 269
BccI CCATC 3 cut(s) 689, 779, 962
BceAI ACGGC 2 cut(s) 609, 713
BcnI CCSGG 3 cut(s) 463, 559, 573
BcoDI GTCTC 2 cut(s) 142, 831
BfmI CTRYAG 1 cut(s) 124
BfoI RGCGCY 1 cut(s) 500
BfuAI ACCTGC 1 cut(s) 33
BglII AGATCT 1 cut(s) 516
BisI GCNGC 7 cut(s) 121, 124, 258, 402, 430, 439, 973
BlpI GCTNAGC 1 cut(s) 488
BlsI GCNGC 7 cut(s) 122, 125, 259, 403, 431, 440, 974
BmcAI AGTACT 1 cut(s) 810
Bme1390I CCNGG 3 cut(s) 463, 559, 573
Bme18I GGWCC 1 cut(s) 538
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 4 cut(s) 511, 538, 643, 901
BmiI GGNNCC 3 cut(s) 512, 644, 902
BmrFI CCNGG 3 cut(s) 463, 559, 573
BpmI CTGGAG 2 cut(s) 394, 855
Bpu1102I GCTNAGC 1 cut(s) 488
BpuMI CCSGG 3 cut(s) 463, 559, 573
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 2 cut(s) 572, 1002
BsaWI WCCGGW 2 cut(s) 540, 872
BsaXI ACNNNNNCTCC 8 cut(s) 311, 317, 341, 347, 362, 392, 828, 858
Bsc4I CCNNNNNNNGG 6 cut(s) 421, 457, 468, 547, 620, 1008
Bse118I RCCGGY 2 cut(s) 253, 872
Bse1I ACTGG 3 cut(s) 377, 733, 914
Bse3DI GCAATG 1 cut(s) 826
BseDI CCNNGG 2 cut(s) 572, 1002
BseLI CCNNNNNNNGG 6 cut(s) 421, 457, 468, 547, 620, 1008
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 3 cut(s) 377, 733, 914
BseRI GAGGAG 7 cut(s) 263, 266, 275, 319, 322, 325, 349
BseXI GCAGC 3 cut(s) 110, 132, 269
Bsh1236I CGCG 4 cut(s) 296, 387, 417, 434
BshFI GGCC 8 cut(s) 253, 461, 513, 645, 689, 728, 903, 972
BshTI ACCGGT 1 cut(s) 872
BsiHKAI GWGCWC 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 6 cut(s) 254, 462, 541, 559, 572, 873
BslFI GGGAC 2 cut(s) 589, 903
BslI CCNNNNNNNGG 6 cut(s) 421, 457, 468, 547, 620, 1008
BsmAI GTCTC 2 cut(s) 142, 831
BsmFI GGGAC 2 cut(s) 589, 903
BsmI GAATGC 1 cut(s) 567
BsnI GGCC 8 cut(s) 253, 461, 513, 645, 689, 728, 903, 972
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 4 cut(s) 516, 582, 699, 744
Bsp1720I GCTNAGC 1 cut(s) 488
BspANI GGCC 8 cut(s) 253, 461, 513, 645, 689, 728, 903, 972
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 4 cut(s) 296, 387, 417, 434
BspLI GGNNCC 3 cut(s) 512, 644, 902
BspMAI CTGCAG 1 cut(s) 128
BspMI ACCTGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 752
BsrBI CCGCTC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 826
BsrFI RCCGGY 2 cut(s) 253, 872
BsrI ACTGG 3 cut(s) 377, 733, 914
BssAI RCCGGY 2 cut(s) 253, 872
BssECI CCNNGG 2 cut(s) 572, 1002
BssMI GATC 4 cut(s) 516, 582, 699, 744
BssNI GRCGYC 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 1002
Bst4CI ACNGT 2 cut(s) 481, 979
Bst6I CTCTTC 2 cut(s) 284, 343
BstACI GRCGYC 1 cut(s) 578
BstC8I GCNNGC 6 cut(s) 255, 385, 436, 474, 529, 718
BstDEI CTNAG 1 cut(s) 488
BstENI CCTNNNNNAGG 1 cut(s) 455
BstFNI CGCG 4 cut(s) 296, 387, 417, 434
BstH2I RGCGCY 1 cut(s) 500
BstHHI GCGC 6 cut(s) 298, 389, 434, 499, 527, 611
BstKTI GATC 4 cut(s) 519, 585, 702, 747
BstMAI GTCTC 2 cut(s) 142, 831
BstMBI GATC 4 cut(s) 516, 582, 699, 744
BstMWI GCNNNNNNNGC 6 cut(s) 384, 435, 438, 505, 969, 1004
BstNSI RCATGY 3 cut(s) 59, 531, 917
BstSCI CCNGG 3 cut(s) 461, 557, 571
BstSFI CTRYAG 1 cut(s) 124
BstUI CGCG 4 cut(s) 296, 387, 417, 434
BstV1I GCAGC 3 cut(s) 110, 132, 269
BstX2I RGATCY 1 cut(s) 516
BstXI CCANNNNNNTGG 2 cut(s) 249, 521
BstYI RGATCY 1 cut(s) 516
BsuRI GGCC 8 cut(s) 253, 461, 513, 645, 689, 728, 903, 972
BtsI GCAGTG 2 cut(s) 646, 970
BtsIMutI CAGTG 2 cut(s) 646, 970
BveI ACCTGC 1 cut(s) 33
Cac8I GCNNGC 6 cut(s) 255, 385, 436, 474, 529, 718
CaiI CAGNNNCTG 1 cut(s) 123
CfoI GCGC 6 cut(s) 298, 389, 434, 499, 527, 611
Cfr10I RCCGGY 2 cut(s) 253, 872
Cfr13I GGNCC 4 cut(s) 511, 538, 643, 901
Csp6I GTAC 2 cut(s) 466, 809
CspAI ACCGGT 1 cut(s) 872
CviAII CATG 4 cut(s) 56, 528, 628, 914
CviQI GTAC 2 cut(s) 466, 809
DdeI CTNAG 1 cut(s) 488
DpnI GATC 4 cut(s) 518, 584, 701, 746
DpnII GATC 4 cut(s) 516, 582, 699, 744
DraIII CACNNNGTG 2 cut(s) 561, 673
EaeI YGGCCR 3 cut(s) 251, 726, 970
Eam1104I CTCTTC 2 cut(s) 284, 343
EarI CTCTTC 2 cut(s) 284, 343
EciI GGCGGA 1 cut(s) 647
Ecl136II GAGCTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 1002
Eco147I AGGCCT 1 cut(s) 689
Eco24I GRGCYC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 538
Eco53kI GAGCTC 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 452
EcoICRI GAGCTC 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 1002
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 1002
FaeI CATG 4 cut(s) 59, 531, 631, 917
FaiI YATR 9 cut(s) 57, 399, 529, 629, 725, 782, 803, 842, 915
FaqI GGGAC 2 cut(s) 589, 903
FatI CATG 4 cut(s) 55, 527, 627, 913
FauI CCCGC 2 cut(s) 422, 501
Fnu4HI GCNGC 7 cut(s) 121, 124, 258, 402, 430, 439, 973
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 7 cut(s) 121, 124, 258, 402, 430, 439, 973
FspI TGCGCA 1 cut(s) 610
GlaI GCGC 6 cut(s) 297, 388, 433, 498, 526, 610
GluI GCNGC 7 cut(s) 121, 124, 258, 402, 430, 439, 973
GsuI CTGGAG 2 cut(s) 394, 855
HaeII RGCGCY 1 cut(s) 500
HaeIII GGCC 8 cut(s) 253, 461, 513, 645, 689, 728, 903, 972
HapII CCGG 6 cut(s) 254, 462, 541, 559, 572, 873
HhaI GCGC 6 cut(s) 298, 389, 434, 499, 527, 611
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 4 cut(s) 59, 531, 631, 917
Hin6I GCGC 6 cut(s) 296, 387, 432, 497, 525, 609
HinP1I GCGC 6 cut(s) 296, 387, 432, 497, 525, 609
HinfI GANTC 2 cut(s) 624, 1046
HpaII CCGG 6 cut(s) 254, 462, 541, 559, 572, 873
HphI GGTGA 3 cut(s) 292, 769, 862
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 409, 660
Hpy188III TCNNGA 4 cut(s) 180, 454, 589, 867
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 3 cut(s) 223, 481, 583
HpyAV CCTTC 6 cut(s) 186, 451, 706, 755, 847, 1025
HpyCH4III ACNGT 2 cut(s) 481, 979
HpyCH4IV ACGT 1 cut(s) 578
HpyCH4V TGCA 4 cut(s) 28, 126, 567, 651
HpyF10VI GCNNNNNNNGC 6 cut(s) 384, 435, 438, 505, 969, 1004
HpyF3I CTNAG 1 cut(s) 488
HpySE526I ACGT 1 cut(s) 578
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 4 cut(s) 59, 531, 631, 917
HspAI GCGC 6 cut(s) 296, 387, 432, 497, 525, 609
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Kzo9I GATC 4 cut(s) 516, 582, 699, 744
LmnI GCTCC 4 cut(s) 276, 375, 383, 1003
Lsp1109I GCAGC 3 cut(s) 110, 132, 269
MaeII ACGT 1 cut(s) 578
MaeIII GTNAC 5 cut(s) 128, 152, 589, 955, 979
MalI GATC 4 cut(s) 518, 584, 701, 746
MbiI CCGCTC 1 cut(s) 508
MboI GATC 4 cut(s) 516, 582, 699, 744
MboII GAAGA 4 cut(s) 195, 271, 330, 709
MflI RGATCY 1 cut(s) 516
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 5 cut(s) 48, 192, 616, 768, 895
MlyI GAGTC 1 cut(s) 618
MroNI GCCGGC 1 cut(s) 253
MseI TTAA 2 cut(s) 195, 1051
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 6 cut(s) 254, 462, 541, 559, 572, 873
MspR9I CCNGG 3 cut(s) 463, 559, 573
Mva1269I GAATGC 1 cut(s) 567
MvnI CGCG 4 cut(s) 296, 387, 417, 434
MwoI GCNNNNNNNGC 6 cut(s) 384, 435, 438, 505, 969, 1004
NaeI GCCGGC 1 cut(s) 255
NciI CCSGG 3 cut(s) 463, 559, 573
NdeII GATC 4 cut(s) 516, 582, 699, 744
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 4 cut(s) 59, 531, 631, 917
NlaIV GGNNCC 3 cut(s) 512, 644, 902
NmuCI GTSAC 4 cut(s) 128, 152, 589, 955
NsbI TGCGCA 1 cut(s) 610
NspI RCATGY 3 cut(s) 59, 531, 917
PaeI GCATGC 1 cut(s) 531
PaeR7I CTCGAG 1 cut(s) 452
PceI AGGCCT 1 cut(s) 689
PciI ACATGT 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PctI GAATGC 1 cut(s) 567
PdiI GCCGGC 1 cut(s) 255
PflFI GACNNNGTC 1 cut(s) 422
PflMI CCANNNNNTGG 1 cut(s) 1008
PinAI ACCGGT 1 cut(s) 872
PkrI GCNGC 7 cut(s) 122, 125, 259, 403, 431, 440, 974
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
PscI ACATGT 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 380
PspN4I GGNNCC 3 cut(s) 512, 644, 902
PspPI GGNCC 4 cut(s) 511, 538, 643, 901
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 516
PsyI GACNNNGTC 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 123
RsaI GTAC 2 cut(s) 467, 810
RsaNI GTAC 2 cut(s) 466, 809
RseI CAYNNNNRTG 1 cut(s) 918
SacI GAGCTC 1 cut(s) 380
SaqAI TTAA 2 cut(s) 195, 1051
SatI GCNGC 7 cut(s) 121, 124, 258, 402, 430, 439, 973
Sau3AI GATC 4 cut(s) 516, 582, 699, 744
Sau96I GGNCC 4 cut(s) 511, 538, 643, 901
ScaI AGTACT 1 cut(s) 810
SchI GAGTC 1 cut(s) 618
ScrFI CCNGG 3 cut(s) 463, 559, 573
SduI GDGCHC 1 cut(s) 380
SfcI CTRYAG 1 cut(s) 124
Sfr274I CTCGAG 1 cut(s) 452
SinI GGWCC 1 cut(s) 538
SlaI CTCGAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SphI GCATGC 1 cut(s) 531
Sse9I AATT 5 cut(s) 48, 192, 616, 768, 895
SseBI AGGCCT 1 cut(s) 689
SstI GAGCTC 1 cut(s) 380
StuI AGGCCT 1 cut(s) 689
StyD4I CCNGG 3 cut(s) 461, 557, 571
StyI CCWWGG 1 cut(s) 1002
TaaI ACNGT 2 cut(s) 481, 979
TaiI ACGT 1 cut(s) 581
TaqI TCGA 6 cut(s) 453, 504, 534, 581, 684, 951
TasI AATT 5 cut(s) 48, 192, 616, 768, 895
TatI WGTACW 1 cut(s) 808
TauI GCSGC 4 cut(s) 404, 432, 441, 975
Tru1I TTAA 2 cut(s) 195, 1051
Tru9I TTAA 2 cut(s) 195, 1051
TscAI CASTG 2 cut(s) 653, 970
TseFI GTSAC 4 cut(s) 128, 152, 589, 955
TseI GCWGC 3 cut(s) 120, 123, 257
Tsp45I GTSAC 4 cut(s) 128, 152, 589, 955
TspGWI ACGGA 4 cut(s) 97, 459, 636, 907
TspRI CASTG 2 cut(s) 653, 970
Tth111I GACNNNGTC 1 cut(s) 422
Van91I CCANNNNNTGG 1 cut(s) 1008
VpaK11BI GGWCC 1 cut(s) 538
VspI ATTAAT 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 455
XapI RAATTY 1 cut(s) 768
XceI RCATGY 3 cut(s) 59, 531, 917
XhoI CTCGAG 1 cut(s) 452
ZraI GACGTC 1 cut(s) 579
ZrmI AGTACT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.