Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006802

Physical Location & Seq

Genomic Coordinates Forward (+)

25931196 .. 25932279

Gene Structure 1084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCAGCAGGTGTCAATTCTTGGGAACTCAGAAGATTTTGGGGTATTGAAGAATTCGGAAGGAGGAGAGAGGGCTGACTTTGGTGATGTGAATGGTGTTCCTGCGGTGGTTGAGTTTGGAGCAGGGAGAGGACAATTGACACAAATGCTGGCAGATTGTTATGGGATCAAAAAGGTCATTTTGGTTGAGAGGAAATCGTACAAGTTGAAGGCAGATCGATCCTTGCGTCAGAAGGAGAGCTTGATTTTGCAGTGTTTGAGAATTGACAGTTGGTCTGGCCTATTACTCTTTCCTTGTGCATATTTCGCTTTAGGGGGTTGGTTCACAGAACTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0009451 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRM13 zf-TRM13_CCCH zf-U11-48K

Protein Analysis

113

Amino Acids

12.35

Weight (kDa)

6.24

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRM13	PF05206	1 - 89	2.3e-14	Methyltransferase TRM13

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01880 AT4G01880 AT4G01880
fragaria_vesca	FvH4_1g26500
malus_domestica	MD09G1293200.v1.1 MD17G1281000.v1.1
prunus_persica	Prupe.3G004500_v2.0.a1
pyrus_communis	pycom09g19590 pycom17g27870
rosa_chinensis	RchiOBHm_Chr3g0486571 RchiOBHm_Chr7g0232271
rosa_laevigata	RLG00000001358 RLG00000023076
rosa_multiflora	Rmu_co8193526.1_g000001 Rmu_sc0023880.1_g000001
rosa_roxburghii	Rroxscaffold_6G00395790
rosa_rugosa	Rorug03G0225200 Rorug07G0272400
rosa_samantha	Rh3AG275300 Rh3BG310300 Rh3CG309600 Rh3DG306300 Rh7CG446100 Rh7DG417400 Rh7DG417600
rosa_wichuraiana	Rw3G024530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	173, 213
AcsI	RAATTY	1 cut(s)	52
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	2 cut(s)	49, 208
AhdI	GACNNNNNGTC	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
AlwI	GGATC	2 cut(s)	173, 213
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	16
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmeRI	GACNNNNNGTC	1 cut(s)	271
Bsa29I	ATCGAT	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	279
BshVI	ATCGAT	1 cut(s)	217
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	165, 214, 218
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	41
BspDI	ATCGAT	1 cut(s)	217
BspPI	GGATC	2 cut(s)	173, 213
BssMI	GATC	3 cut(s)	165, 214, 218
Bst4CI	ACNGT	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	168, 217, 221
BstMBI	GATC	3 cut(s)	165, 214, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	150
ClaI	ATCGAT	1 cut(s)	217
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	199
CviJI	RGCY	3 cut(s)	74, 240, 279
CviKI_1	RGCY	3 cut(s)	74, 240, 279
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	3 cut(s)	167, 216, 220
DpnII	GATC	3 cut(s)	165, 214, 218
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	52
FaiI	YATR	2 cut(s)	162, 301
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	279
HgaI	GACGC	1 cut(s)	215
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	3 cut(s)	31, 58, 231
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	3 cut(s)	53, 202, 226
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	4, 250, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	165, 214, 218
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	4 cut(s)	108, 114, 134, 261
Lsp1109I	GCAGC	1 cut(s)	16
MalI	GATC	3 cut(s)	167, 216, 220
MboI	GATC	3 cut(s)	165, 214, 218
MboII	GAAGA	2 cut(s)	44, 61
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	4 cut(s)	15, 52, 134, 261
MnlI	CCTC	4 cut(s)	56, 63, 122, 183
MunI	CAATTG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	3 cut(s)	165, 214, 218
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	6
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	165, 214, 218
SetI	ASST	3 cut(s)	12, 177, 242
Sse9I	AATT	4 cut(s)	15, 52, 134, 261
SsiI	CCGC	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	1 cut(s)	217
TasI	AATT	4 cut(s)	15, 52, 134, 261
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.