Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000461

Orthogroup ID

OG0005840

Physical Location & Seq

Genomic Coordinates Reverse (-)

209109 .. 210890

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1719 bp

ATGATTAGGTCGGTGTTCAGTGTACCTGTTGAAGACCTTAACGTAAGTAACTTAGTGCAAAAGTGGCGGAGATCCACAAAGGTAACCGGATGCCTGGGGCTTAGGACAAGGAGCGTCCGGAGTCTCTTAAGAAAGGAAAGAAAAAAAGTTATCATGAAGATACCTAGGTTCCGTCACATTTTCTATCAAATATTTCATTCAAGGATCATCTTCTTCTTAGGTAGACCACTCGTTAGGCTTGGGTTCGCTTACTTTTATTTGGTTTTGTGGAATTGGCTTTTGGTAAACGCACCTTTTGCTGACATCGATCTTATGCATTTTTTTTCGGACTCTTTGGCCGTGAACTCTGGCTCCATCGCAGATTCCAATTCTATTCATAATATACCTATCAATGATCCCCCTTTCAATCCAAATGATCCCCAACCTAACAATAATCCAATACCTCTCGACGTTGTCGATCAATTTCGTATACTGAACCAAGAGACGGAATTGGAACTCTTTGCTCGGATACGACTTCTCGAGAACCGTTTGATTGACGGCTTGCCACCGCAAATGAACTTTGGCGAGTACGAAGCCTTAGTCAGAGGGTTTCTCGATGACACCCTGACCATTGGACACTACCGTAATGTCCTGAGCAATGAGCTCTTCGATCTTCGCCTGTTAGAGCTTACGTTGGGCCTTCCCATTTCAATAAAAAAGCCCCGCTCCGGCCCCTCTCTGACAAGGAAAGAAAGAAATAATCTCAATTTTACGACACGATGGCTGTTCTCCACTAACCACAAGGATACAGGGACTCTATATTTCATCTTCGGTGCTATTGCTGGAGTGATGGGCACATGCTTCTCAGTACTGATTCGTATGGAATTAGCACGACCTGGCGATCAAATTCTTGGTGGTAATCATCAACTTTATAATGTTTTAATAACGGCTCACGCTTTTTTAATTTTCTTTTTTATGGTTATGCCGGCGATGATAGGCGGATATGGTAATAGGTCTTTTCCTCATTCTGATTTTGGTTTTCGTATCACGGATCTTGCTTCGCGCTTTATGGCGAAAATGCTCACCGGATTGCTTTTTCTTTCTCTCCTGGGTAAAGTAGTATCCCTTTTTTTAATATTTTTAAAGTGGGTATTACTTTATTGTGGCTTCTCGGGGTTTCCAGGGATCCTCACTGCCTGTTCGGTGGTCCCTACCGACCCCGTCCCCCTGCTTGAATTCTACCTCAATATGCCCCACCAAGATCCAAACTGGGTTAGATATGTGATAGACGTCCTACGCGCCACCCCTCCTGCCGAGATGGCGGCACAAATCCAATCTTTTATTAACCTCGAGTCGGCTTCGGCAACTCAAAAGGTTATAATTGACCAGTGCAAAACTATTTTTTTTTCGAAAGAAGATTCGACCCTATTTATTCCTGAATTCTACTTTGATGTTATGGTTAGTGCATTGTTAGAACAACTCAACATAGAATTTAATCAACCAGCACTCTCGAGCATTCTCATGTCTCTCTCCACCGATGAGCACCACGCCCCGTTCTACGCAGAGCTCTTAAATTCGGAGCTGTATACTTCTTTTTGGAACCAACATAAGGCGAAGGAAGAAGCTCAATCTCATAGTTATTTGAAGTACCAGGAGTATCTATCACTAGAGGACAGGGGCCGCGTGCTCCGGGCCGAACGCGATTCGTTGTTGCGTCAGTTAAGCCGGCACCGGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015672 GO:0015980 GO:0015988 GO:0015990 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046034 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0055114 GO:0071704 GO:0072521 GO:0098655 GO:0098660 GO:0098662 GO:1901135 GO:1901360 GO:1901564 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX1

Protein Analysis

573

Amino Acids

65.7

Weight (kDa)

8.64

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX1	PF00115	263 - 371	3.5e-09	Cytochrome C and Quinol oxidase polypeptide I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG01360
malus_domestica	MD13G1127000.v1.1
pyrus_communis	pycom461g00250
rosa_chinensis	RchiOBHm_Chr6g0256731 RchiOBHm_Chr6g0263801 RchiOBHm_MTg0498781 RchiOBHm_MTg0498791
rosa_laevigata	RLG00000000130 RLG00000000185 RLG00000000436 RLG00000000473 RLG00000000496 RLG00000002909
rosa_multiflora	Rmu_sc0000046.1_g000012 Rmu_sc0009290.1_g000004
rosa_roxburghii	Rroxscaffold_2G00118940 Rroxscaffold_2G00119310
rosa_rugosa	Rorug05G0209600
rosa_samantha	Rh1BG209200 Rh1BG209300 Rh1DG235800 Rh5CG352000 Rh6BG284800 Rh6CG178300 Rh6CG178400 Rh6DG170100 Rh6DG170200
rosa_wichuraiana	Rw4G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	912, 1358
AatII	GACGTC	1 cut(s)	1272
AccB1I	GGYRCC	1 cut(s)	1707
AccBSI	CCGCTC	1 cut(s)	705
AccI	GTMKAC	3 cut(s)	223, 469, 1565
AccII	CGCG	4 cut(s)	1042, 1278, 1662, 1680
AccIII	TCCGGA	1 cut(s)	117
AciI	CCGC	6 cut(s)	67, 548, 703, 978, 1301, 1660
AclWI	GGATC	8 cut(s)	66, 212, 389, 410, 1038, 1159, 1172, 1235
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	5 cut(s)	885, 1214, 1418, 1469, 1552
AcyI	GRCGYC	1 cut(s)	1269
AfaI	GTAC	4 cut(s)	24, 569, 849, 1628
AfiI	CCNNNNNNNGG	5 cut(s)	484, 707, 1333, 1588, 1711
AflII	CTTAAG	1 cut(s)	127
AgsI	TTSAA	6 cut(s)	32, 201, 406, 690, 1214, 1624
AjnI	CCWGG	5 cut(s)	93, 874, 1086, 1159, 1629
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	5 cut(s)	643, 667, 1546, 1561, 1604
AluI	AGCT	5 cut(s)	643, 667, 1546, 1561, 1604
Alw21I	GWGCWC	4 cut(s)	645, 1524, 1548, 1668
Alw26I	GTCTC	3 cut(s)	128, 476, 1509
AlwI	GGATC	8 cut(s)	66, 212, 389, 410, 1038, 1159, 1172, 1235
Ama87I	CYCGRG	4 cut(s)	518, 1150, 1328, 1489
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	5 cut(s)	336, 676, 709, 1657, 1671
ApoI	RAATTY	5 cut(s)	885, 1214, 1418, 1469, 1552
ArsI	GACNNNNNNTTYG	2 cut(s)	564, 596
AspA2I	CCTAGG	1 cut(s)	164
AspLEI	GCGC	2 cut(s)	1044, 1280
AspS9I	GGNCC	5 cut(s)	676, 710, 1186, 1657, 1671
AsuC2I	CCSGG	2 cut(s)	1670, 1712
AsuHPI	GGTGA	1 cut(s)	1054
AsuII	TTCGAA	1 cut(s)	1388
AvaI	CYCGRG	4 cut(s)	518, 1150, 1328, 1489
AvaII	GGWCC	1 cut(s)	1186
AvrII	CCTAGG	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	836
BaeI	ACNNNNGTAYC	2 cut(s)	152, 185
BamHI	GGATCC	1 cut(s)	1164
BanI	GGYRCC	1 cut(s)	1707
BanII	GRGCYC	2 cut(s)	645, 1548
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	4 cut(s)	645, 1524, 1548, 1668
BccI	CCATC	4 cut(s)	362, 753, 823, 1291
BceAI	ACGGC	3 cut(s)	323, 553, 942
BciT130I	CCWGG	5 cut(s)	95, 876, 1088, 1161, 1631
BciVI	GTATCC	3 cut(s)	501, 778, 1111
BcnI	CCSGG	2 cut(s)	1670, 1712
BcoDI	GTCTC	3 cut(s)	128, 476, 1509
BfaI	CTAG	3 cut(s)	165, 1646, 1717
BfrI	CTTAAG	1 cut(s)	127
BfuI	GTATCC	3 cut(s)	501, 778, 1111
BglI	GCCNNNNNGGC	1 cut(s)	1298
BisI	GCNGC	2 cut(s)	1302, 1660
BlnI	CCTAGG	1 cut(s)	164
BlsI	GCNGC	2 cut(s)	1303, 1661
BmcAI	AGTACT	1 cut(s)	849
Bme1390I	CCNGG	7 cut(s)	95, 876, 1088, 1161, 1631, 1670, 1712
Bme18I	GGWCC	1 cut(s)	1186
BmeT110I	CYCGRG	4 cut(s)	518, 1150, 1328, 1489
BmgT120I	GGNCC	5 cut(s)	676, 710, 1186, 1657, 1671
BmiI	GGNNCC	8 cut(s)	170, 352, 712, 1166, 1188, 1580, 1658, 1709
BmrFI	CCNGG	7 cut(s)	95, 876, 1088, 1161, 1631, 1670, 1712
BmrI	ACTGGG	1 cut(s)	1258
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	1258
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	576, 608
BpmI	CTGGAG	1 cut(s)	843
Bpu10I	CCTNAGC	2 cut(s)	101, 632
Bpu14I	TTCGAA	1 cut(s)	1388
BpuMI	CCSGG	2 cut(s)	1670, 1712
Bsa29I	ATCGAT	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	1269
BsaJI	CCNNGG	5 cut(s)	94, 164, 1087, 1160, 1711
BsaWI	WCCGGW	3 cut(s)	86, 117, 1064
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	5 cut(s)	484, 707, 1333, 1588, 1711
Bse118I	RCCGGY	2 cut(s)	964, 1704
Bse1I	ACTGG	2 cut(s)	1253, 1366
Bse3DI	GCAATG	1 cut(s)	643
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	5 cut(s)	95, 876, 1088, 1161, 1631
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	5 cut(s)	94, 164, 1087, 1160, 1711
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	5 cut(s)	484, 707, 1333, 1588, 1711
BseMI	GCAATG	1 cut(s)	643
BseMII	CTCAG	2 cut(s)	623, 858
BseNI	ACTGG	2 cut(s)	1253, 1366
BseSI	GKGCMC	1 cut(s)	836
Bsh1236I	CGCG	4 cut(s)	1042, 1278, 1662, 1680
BshFI	GGCC	5 cut(s)	338, 678, 711, 1659, 1673
BshNI	GGYRCC	1 cut(s)	1707
BshVI	ATCGAT	1 cut(s)	306
BsiHKAI	GWGCWC	4 cut(s)	645, 1524, 1548, 1668
BsiHKCI	CYCGRG	4 cut(s)	518, 1150, 1328, 1489
BsiSI	CCGG	8 cut(s)	87, 118, 708, 965, 1065, 1669, 1705, 1711
BslFI	GGGAC	3 cut(s)	805, 1172, 1187
BslI	CCNNNNNNNGG	5 cut(s)	484, 707, 1333, 1588, 1711
BsmAI	GTCTC	3 cut(s)	128, 476, 1509
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	3 cut(s)	805, 1172, 1187
BsmI	GAATGC	1 cut(s)	1494
BsnI	GGCC	5 cut(s)	338, 678, 711, 1659, 1673
BsoBI	CYCGRG	4 cut(s)	518, 1150, 1328, 1489
Bsp119I	TTCGAA	1 cut(s)	1388
Bsp1286I	GDGCHC	5 cut(s)	645, 836, 1524, 1548, 1668
Bsp13I	TCCGGA	1 cut(s)	117
BspACI	CCGC	6 cut(s)	67, 548, 703, 978, 1301, 1660
BspANI	GGCC	5 cut(s)	338, 678, 711, 1659, 1673
BspCNI	CTCAG	2 cut(s)	624, 857
BspDI	ATCGAT	1 cut(s)	306
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	4 cut(s)	1042, 1278, 1662, 1680
BspHI	TCATGA	1 cut(s)	153
BspLI	GGNNCC	8 cut(s)	170, 352, 712, 1166, 1188, 1580, 1658, 1709
BspPI	GGATC	8 cut(s)	66, 212, 389, 410, 1038, 1159, 1172, 1235
BspQI	GCTCTTC	1 cut(s)	650
BspT104I	TTCGAA	1 cut(s)	1388
BspT107I	GGYRCC	1 cut(s)	1707
BspTI	CTTAAG	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	705
BsrDI	GCAATG	1 cut(s)	643
BsrFI	RCCGGY	2 cut(s)	964, 1704
BsrI	ACTGG	2 cut(s)	1253, 1366
BssAI	RCCGGY	2 cut(s)	964, 1704
BssECI	CCNNGG	5 cut(s)	94, 164, 1087, 1160, 1711
BssNAI	GTATAC	2 cut(s)	470, 1566
BssNI	GRCGYC	1 cut(s)	1269
BssT1I	CCWWGG	1 cut(s)	164
Bst1107I	GTATAC	2 cut(s)	470, 1566
Bst2UI	CCWGG	5 cut(s)	95, 876, 1088, 1161, 1631
Bst4CI	ACNGT	2 cut(s)	527, 623
Bst6I	CTCTTC	1 cut(s)	650
BstACI	GRCGYC	1 cut(s)	1269
BstAFI	CTTAAG	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	1388
BstC8I	GCNNGC	4 cut(s)	542, 966, 1664, 1706
BstDEI	CTNAG	6 cut(s)	52, 101, 217, 577, 632, 844
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	4 cut(s)	1042, 1278, 1662, 1680
BstHHI	GCGC	2 cut(s)	1044, 1280
BstMAI	GTCTC	3 cut(s)	128, 476, 1509
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 296, 1298
BstNI	CCWGG	5 cut(s)	95, 876, 1088, 1161, 1631
BstNSI	RCATGY	1 cut(s)	840
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	7 cut(s)	93, 874, 1086, 1159, 1629, 1668, 1710
BstSLI	GKGCMC	1 cut(s)	836
BstUI	CGCG	4 cut(s)	1042, 1278, 1662, 1680
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	4 cut(s)	71, 1030, 1164, 1240
BstYI	RGATCY	4 cut(s)	71, 1030, 1164, 1240
BstZ17I	GTATAC	2 cut(s)	470, 1566
Bsu15I	ATCGAT	1 cut(s)	306
BsuI	GTATCC	3 cut(s)	501, 778, 1111
BsuRI	GGCC	5 cut(s)	338, 678, 711, 1659, 1673
BsuTUI	ATCGAT	1 cut(s)	306
BtgZI	GCGATG	2 cut(s)	340, 983
BtsCI	GGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	1170
BtsIMutI	CAGTG	3 cut(s)	25, 1170, 1373
Cac8I	GCNNGC	4 cut(s)	542, 966, 1664, 1706
CciI	TCATGA	1 cut(s)	153
CfoI	GCGC	2 cut(s)	1044, 1280
Cfr10I	RCCGGY	2 cut(s)	964, 1704
Cfr13I	GGNCC	5 cut(s)	676, 710, 1186, 1657, 1671
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	2 cut(s)	103, 1682
Csp6I	GTAC	4 cut(s)	23, 568, 848, 1627
CviAII	CATG	3 cut(s)	154, 837, 1501
CviQI	GTAC	4 cut(s)	23, 568, 848, 1627
DdeI	CTNAG	6 cut(s)	52, 101, 217, 577, 632, 844
DraI	TTTAAA	1 cut(s)	1122
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
EciI	GGCGGA	2 cut(s)	82, 993
Ecl136II	GAGCTC	2 cut(s)	643, 1546
Eco130I	CCWWGG	1 cut(s)	164
Eco24I	GRGCYC	2 cut(s)	645, 1548
Eco47I	GGWCC	1 cut(s)	1186
Eco53kI	GAGCTC	2 cut(s)	643, 1546
Eco88I	CYCGRG	4 cut(s)	518, 1150, 1328, 1489
Eco91I	GGTNACC	1 cut(s)	82
EcoICRI	GAGCTC	2 cut(s)	643, 1546
EcoO65I	GGTNACC	1 cut(s)	82
EcoRI	GAATTC	2 cut(s)	1214, 1418
EcoRII	CCWGG	5 cut(s)	93, 874, 1086, 1159, 1629
EcoT14I	CCWWGG	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	2 cut(s)	645, 1548
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	3 cut(s)	157, 840, 1504
FaqI	GGGAC	3 cut(s)	805, 1172, 1187
FatI	CATG	3 cut(s)	153, 836, 1500
FauI	CCCGC	1 cut(s)	710
FblI	GTMKAC	3 cut(s)	223, 469, 1565
Fnu4HI	GCNGC	2 cut(s)	1302, 1660
FokI	GGATG	1 cut(s)	102
FriOI	GRGCYC	2 cut(s)	645, 1548
Fsp4HI	GCNGC	2 cut(s)	1302, 1660
FspBI	CTAG	3 cut(s)	165, 1646, 1717
GlaI	GCGC	2 cut(s)	1043, 1279
GluI	GCNGC	2 cut(s)	1302, 1660
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	5 cut(s)	338, 678, 711, 1659, 1673
HapII	CCGG	8 cut(s)	87, 118, 708, 965, 1065, 1669, 1705, 1711
HgaI	GACGC	2 cut(s)	103, 1682
HhaI	GCGC	2 cut(s)	1044, 1280
Hin1I	GRCGYC	1 cut(s)	1269
Hin1II	CATG	3 cut(s)	157, 840, 1504
Hin6I	GCGC	2 cut(s)	1042, 1278
HinP1I	GCGC	2 cut(s)	1042, 1278
HinfI	GANTC	8 cut(s)	121, 329, 362, 793, 853, 1331, 1397, 1682
HpaII	CCGG	8 cut(s)	87, 118, 708, 965, 1065, 1669, 1705, 1711
HphI	GGTGA	1 cut(s)	1054
Hpy166II	GTNNAC	6 cut(s)	23, 224, 286, 343, 470, 1566
Hpy188I	TCNGA	6 cut(s)	328, 507, 584, 720, 1009, 1558
Hpy188III	TCNNGA	9 cut(s)	118, 154, 446, 518, 520, 593, 631, 1415, 1489
Hpy8I	GTNNAC	6 cut(s)	23, 224, 286, 343, 470, 1566
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	2 cut(s)	689, 1588
HpyCH4III	ACNGT	2 cut(s)	527, 623
HpyCH4IV	ACGT	4 cut(s)	42, 450, 671, 1269
HpyCH4V	TGCA	4 cut(s)	58, 316, 1371, 1445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 296, 1298
HpyF3I	CTNAG	6 cut(s)	52, 101, 217, 577, 632, 844
HpySE526I	ACGT	4 cut(s)	42, 450, 671, 1269
Hsp92I	GRCGYC	1 cut(s)	1269
Hsp92II	CATG	3 cut(s)	157, 840, 1504
HspAI	GCGC	2 cut(s)	1042, 1278
Kpn2I	TCCGGA	1 cut(s)	117
KroI	GCCGGC	2 cut(s)	964, 1704
KroNI	GCCGGC	2 cut(s)	966, 1706
LguI	GCTCTTC	1 cut(s)	650
LmnI	GCTCC	5 cut(s)	111, 356, 710, 1558, 1671
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	3 cut(s)	165, 1646, 1717
MaeII	ACGT	4 cut(s)	42, 450, 671, 1269
MaeIII	GTNAC	3 cut(s)	47, 82, 173
MbiI	CCGCTC	1 cut(s)	705
MboII	GAAGA	9 cut(s)	44, 169, 202, 205, 637, 644, 799, 1406, 1610
MflI	RGATCY	4 cut(s)	71, 1030, 1164, 1240
MhlI	GDGCHC	5 cut(s)	645, 836, 1524, 1548, 1668
MlyI	GAGTC	4 cut(s)	130, 323, 787, 1340
MnlI	CCTC	9 cut(s)	453, 578, 724, 1011, 1178, 1232, 1296, 1337, 1642
Mph1103I	ATGCAT	1 cut(s)	318
MroI	TCCGGA	1 cut(s)	117
MroNI	GCCGGC	2 cut(s)	964, 1704
MslI	CAYNNNNRTG	1 cut(s)	1499
MspCI	CTTAAG	1 cut(s)	127
MspI	CCGG	8 cut(s)	87, 118, 708, 965, 1065, 1669, 1705, 1711
MspR9I	CCNGG	7 cut(s)	95, 876, 1088, 1161, 1631, 1670, 1712
Mva1269I	GAATGC	1 cut(s)	1494
MvaI	CCWGG	5 cut(s)	95, 876, 1088, 1161, 1631
MvnI	CGCG	4 cut(s)	1042, 1278, 1662, 1680
MwoI	GCNNNNNNNGC	3 cut(s)	64, 296, 1298
NaeI	GCCGGC	2 cut(s)	966, 1706
NciI	CCSGG	2 cut(s)	1670, 1712
NgoMIV	GCCGGC	2 cut(s)	964, 1704
NlaIII	CATG	3 cut(s)	157, 840, 1504
NlaIV	GGNNCC	8 cut(s)	170, 352, 712, 1166, 1188, 1580, 1658, 1709
NmeAIII	GCCGAG	1 cut(s)	1318
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	1 cut(s)	840
NspV	TTCGAA	1 cut(s)	1388
PaeR7I	CTCGAG	3 cut(s)	518, 1328, 1489
PagI	TCATGA	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PctI	GAATGC	1 cut(s)	1494
PdiI	GCCGGC	2 cut(s)	966, 1706
PfeI	GAWTC	4 cut(s)	362, 853, 1397, 1682
PflFI	GACNNNGTC	2 cut(s)	452, 1199
PkrI	GCNGC	2 cut(s)	1303, 1661
PleI	GAGTC	4 cut(s)	129, 323, 787, 1339
PpsI	GAGTC	4 cut(s)	129, 323, 787, 1339
PsiI	TTATAA	2 cut(s)	912, 1358
Psp124BI	GAGCTC	2 cut(s)	645, 1548
Psp6I	CCWGG	5 cut(s)	93, 874, 1086, 1159, 1629
PspEI	GGTNACC	1 cut(s)	82
PspGI	CCWGG	5 cut(s)	93, 874, 1086, 1159, 1629
PspN4I	GGNNCC	8 cut(s)	170, 352, 712, 1166, 1188, 1580, 1658, 1709
PspPI	GGNCC	5 cut(s)	676, 710, 1186, 1657, 1671
PspXI	VCTCGAGB	1 cut(s)	1328
PsuI	RGATCY	4 cut(s)	71, 1030, 1164, 1240
PsyI	GACNNNGTC	2 cut(s)	452, 1199
RsaI	GTAC	4 cut(s)	24, 569, 849, 1628
RsaNI	GTAC	4 cut(s)	23, 568, 848, 1627
RseI	CAYNNNNRTG	1 cut(s)	1499
SacI	GAGCTC	2 cut(s)	645, 1548
SapI	GCTCTTC	1 cut(s)	650
SatI	GCNGC	2 cut(s)	1302, 1660
Sau96I	GGNCC	5 cut(s)	676, 710, 1186, 1657, 1671
ScaI	AGTACT	1 cut(s)	849
SchI	GAGTC	4 cut(s)	130, 323, 787, 1340
ScrFI	CCNGG	7 cut(s)	95, 876, 1088, 1161, 1631, 1670, 1712
SduI	GDGCHC	5 cut(s)	645, 836, 1524, 1548, 1668
SfaNI	GCATC	1 cut(s)	80
Sfr274I	CTCGAG	3 cut(s)	518, 1328, 1489
SfuI	TTCGAA	1 cut(s)	1388
SinI	GGWCC	1 cut(s)	1186
SlaI	CTCGAG	3 cut(s)	518, 1328, 1489
SmiMI	CAYNNNNRTG	1 cut(s)	1499
SmlI	CTYRAG	4 cut(s)	127, 518, 1328, 1489
SmoI	CTYRAG	4 cut(s)	127, 518, 1328, 1489
SsiI	CCGC	6 cut(s)	67, 548, 703, 978, 1301, 1660
SspI	AATATT	2 cut(s)	192, 1116
SspMI	CTAG	3 cut(s)	165, 1646, 1717
SstI	GAGCTC	2 cut(s)	645, 1548
StyD4I	CCNGG	7 cut(s)	93, 874, 1086, 1159, 1629, 1668, 1710
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	2 cut(s)	527, 623
TaiI	ACGT	4 cut(s)	45, 453, 674, 1272
TatI	WGTACW	1 cut(s)	847
TauI	GCSGC	2 cut(s)	1304, 1662
TfiI	GAWTC	4 cut(s)	362, 853, 1397, 1682
TscAI	CASTG	3 cut(s)	25, 1177, 1373
TseFI	GTSAC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	5 cut(s)	170, 185, 365, 569, 793
TspGWI	ACGGA	3 cut(s)	161, 500, 1043
TspRI	CASTG	3 cut(s)	25, 1177, 1373
Tth111I	GACNNNGTC	2 cut(s)	452, 1199
Vha464I	CTTAAG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	1186
XapI	RAATTY	5 cut(s)	885, 1214, 1418, 1469, 1552
XceI	RCATGY	1 cut(s)	840
XhoI	CTCGAG	3 cut(s)	518, 1328, 1489
XmaJI	CCTAGG	1 cut(s)	164
XmiI	GTMKAC	3 cut(s)	223, 469, 1565
XspI	CTAG	3 cut(s)	165, 1646, 1717
ZraI	GACGTC	1 cut(s)	1270
ZrmI	AGTACT	1 cut(s)	849
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.