Rh6BG284800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005840
Physical Location & Seq
Reverse (-)
50879756 .. 50890696
10941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG284800.1

Sequence Viewer

Length: 402 bp
ATGAGATTCATAGTTGCATTACTTATAGCTTCCTTGTTCGTAGACAAAGCGGATTCAGAATTTCCATATTTCAGCCCAGTAGCCCACCCGAAGTACTCCCGAGTCCCAAGTCCCGAACTCAACTACGGCCTATTCGAATATGGAGAATTATTTGATTCGGGTTTGGGTTCAATTAAGGAGTTGGCCTGCTTAAGTTCCTCCTCAGTGCAGCGCCTGGTTGTGTCTTCGCTGGAGGAAATCCGAATGTCGTCGTTGTTGTCAGATTGTGAAGTTGGATTGTTTGGAAGTGATGGAAAAAAAGGCTTTGCGTACAAAGAAGGGTTCCAACAAAGTGGTGAAGAACGTACATCCCACCTGCCCCAAACGCTTTCGATGAGAGCGAGATTGATGTATGTCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.75

Weight (kDa)

5.37

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 363
AccI GTMKAC 1 cut(s) 42
AciI CCGC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 3 cut(s) 95, 311, 346
AflII CTTAAG 1 cut(s) 190
AgsI TTSAA 1 cut(s) 171
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 2 cut(s) 127, 183
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 347
AsuII TTCGAA 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 284
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 214
BfrI CTTAAG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 363
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
BmcAI AGTACT 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 251
Bpu14I TTCGAA 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 227
BshFI GGCC 2 cut(s) 129, 185
BsiHKCI CYCGRG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 89, 96
BsmFI GGGAC 2 cut(s) 89, 96
BsnI GGCC 2 cut(s) 129, 185
BsoBI CYCGRG 1 cut(s) 99
Bsp119I TTCGAA 1 cut(s) 135
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 129, 185
BspCNI CTCAG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 323
BspMI ACCTGC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 135
BspTI CTTAAG 1 cut(s) 190
BsrI ACTGG 1 cut(s) 77
Bst2UI CCWGG 1 cut(s) 215
BstAFI CTTAAG 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 2 cut(s) 202, 399
BstF5I GGATG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 332
BsuRI GGCC 2 cut(s) 129, 185
BtsCI GGATG 1 cut(s) 347
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 1 cut(s) 213
Csp6I GTAC 3 cut(s) 94, 310, 345
CviJI RGCY 6 cut(s) 29, 75, 83, 129, 185, 303
CviKI_1 RGCY 6 cut(s) 29, 75, 83, 129, 185, 303
CviQI GTAC 3 cut(s) 94, 310, 345
DdeI CTNAG 2 cut(s) 202, 399
Eco88I CYCGRG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 213
FaiI YATR 5 cut(s) 11, 26, 67, 141, 393
FaqI GGGAC 2 cut(s) 89, 96
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 209
GlaI GCGC 1 cut(s) 212
GluI GCNGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 2 cut(s) 129, 185
HhaI GCGC 1 cut(s) 213
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HinfI GANTC 4 cut(s) 6, 53, 102, 155
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 3 cut(s) 58, 242, 262
Hpy188III TCNNGA 2 cut(s) 99, 113
Hpy8I GTNNAC 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 2 cut(s) 17, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 2 cut(s) 202, 399
HpySE526I ACGT 1 cut(s) 343
HspAI GCGC 1 cut(s) 211
LpnPI CCDG 6 cut(s) 90, 199, 200, 215, 227, 368
Lsp1109I GCAGC 1 cut(s) 220
MaeII ACGT 1 cut(s) 343
MboII GAAGA 2 cut(s) 216, 350
MluCI AATT 3 cut(s) 59, 146, 171
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 2 cut(s) 253, 349
MnlI CCTC 3 cut(s) 208, 211, 226
MseI TTAA 2 cut(s) 174, 191
MspCI CTTAAG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 364
NlaIV GGNNCC 1 cut(s) 323
NspV TTCGAA 1 cut(s) 135
PaqCI CACCTGC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 377
PfeI GAWTC 3 cut(s) 6, 53, 155
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 323
PstNI CAGNNNCTG 1 cut(s) 214
RsaI GTAC 3 cut(s) 95, 311, 346
RsaNI GTAC 3 cut(s) 94, 310, 345
SaqAI TTAA 2 cut(s) 174, 191
SatI GCNGC 1 cut(s) 209
ScaI AGTACT 1 cut(s) 95
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 215
SetI ASST 3 cut(s) 31, 346, 357
SfuI TTCGAA 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 3 cut(s) 59, 146, 171
SsiI CCGC 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 213
TaiI ACGT 1 cut(s) 346
TaqI TCGA 2 cut(s) 135, 371
TasI AATT 3 cut(s) 59, 146, 171
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 3 cut(s) 6, 53, 155
Tru1I TTAA 2 cut(s) 174, 191
Tru9I TTAA 2 cut(s) 174, 191
TscAI CASTG 1 cut(s) 210
TseI GCWGC 1 cut(s) 208
TspRI CASTG 1 cut(s) 210
Vha464I CTTAAG 1 cut(s) 190
XapI RAATTY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.