Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0005840

Physical Location & Seq

Genomic Coordinates Reverse (-)

838920 .. 843947

Gene Structure 5028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

ATGAAAGACGCCCAAAAAGTCCCATGCTTTCCGTTGGTCCAGGTTTTGGTACAGACCCCCCTCCTGCGCCCGCGAGGGATTTCATTCCTGACCTCAACGCGAGTCCCCGCCCTCGAGGCTCTCATAATAGAGATAGAGGAAACCCAACGAGAGCTAAAGGGGGCCCAGGAAGAATTGAAGTCCTGGGAGGGCGAGCGGAGGGCTTTCTTTGAGAAGGAAGCGCGTCTGTATCATCAGCGGCTGAGAAGCGCGGAGGTATACCGCGAATACCAAGCTCTGTTAACCAGGCGGGATCTCTGGGAGGCAGAGTTAACGCGCTTAAAGGAACTGCTGGGTAACAGGGCGATGAGGGCTTTCCGGACCTTCCCAACTACCTCTCCCGATGGTCATAAAAAAGCCCAAGATATAGGGACTCTATATTTCATCTTCGGTGCTATTGCTGGAGTGATGGGCACATGCTTCTCAGTACTGATTCGTATGGAATTAGCACGACCCGGCGATCAAATTCTTGGTGGGAATCATCAACTTTATAATGTTTTAATAACGGCTCATGCTTTTTTAATGATCTTTTTTATGGTTATGCCGGCGATGATAGGTGGATTTGGTAATTGGTTTGTTCCGATTCTGATAGGTGCACCTGACATGGCATTTCCACGATTAAATAATATTTCATTCTGGTTGTTGCCACCAAGTCTCTTGCTCCTATTAAGCTCAGCCTTAGTAGAAGTGGGTAGCGGGACTGGGTGGACGGTCTATCCGCCCTTAAGTGGTATTACCAGCCATTCTGGGGGAGCTGTTGATTTAGCAATTTTTAGTCTTCATCTATCTGAGGTGTATATTCTCATTCTGCCTGGATTCGGTATCATAAGTCATATCGTTTCGACTTTTTCGGGAAAACCGGTCTTCGGGTATCTAGGCATGGTTTATGCCATGATCAGTATAGGTGTTCTTGGATTTCTTGTTTGGGCTCATCATATGTTTACTGTGGGCTTAGACGTTGATACCCGTGCCTACTTTACCGCAGCTACCATGATCATAGCTGTCCCCACTGGAATAAAAATCTTTAGTTGGATCGCTACCATGTGGGGGGGTTCGATACAATACAAAACACCCATGTTATTTGCTGTAGGGTTCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCTGGCAAATTCTGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGCACATTTCCATTATGTACTTTCTATGGGAGCCGTTTTTGCTTTATTTGCAGGATTTTACTATTGGGTGGGAAAAATCTTTGGGCTTTCGGGTATGCCACGTCGCATTCCAGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTTGTTGTTTCTTCGTGGTCGTAACAATCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAATAAAAATGATGGTTGCGCTTGGTGCGGATGTTTTACTTTTCATTCCCTTATCGTTATCACTGCTGCCTGCTCCGCAGGAACTGCTACAATATTTCCTAGGGCAGCCACTCACTATCCTGATGTGGCTGCGCTTTGTAAATCATCGTTTAGTCAACTGTCCTGCCGCACTAAAGCATGTTTTGCTGCAATCCCTTTTGGGGGCCAAATACCTCCGCGCGATATCGATTTGCTTCTTCGTTCTTCATTTGAATTCTTACATTTAGAATTTTACCAACCAGTACTGTCTCAACTACTTATGTCTCTATGCACCGAGGGGCCACAGTCTCGCTTCTATTTGGATGTTCTGGAATCGGATAGATTTTCAGTTCTATGGCAAAGACAACAGAGGGAATTAGCTCCCCGGGTAGAGGGAGAGGCACTGTTCCAAGAAATTTTCCGACTCGAAAAGCAAAATGAAGAGCGTGAAGCACAGAACGCTATTCTTCGCCAACGAATCGAAAATCTTCGGAACCTACAGCCCCCCTATTTTGAGTTTATGGTAACAGAAGAGCGGATCCAATACCAAGACGACTTCATTCATTTGAGGGGAGCAGAGCAGTCAAAGAATGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCACAAAGCGGATTCGGAATTGTCTTTCATTCCAAGGCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCTACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGCGGGGAAGCAAATAAAAATGGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCACCACGTCAAGGTGACACTCTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015672 GO:0015980 GO:0015988 GO:0015990 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX1

Protein Analysis

909

Amino Acids

101.17

Weight (kDa)

7.83

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX1	PF00115	135 - 276	2.8e-33	Cytochrome C and Quinol oxidase polypeptide I
COX1	PF00115	277 - 504	1.4e-62	Cytochrome C and Quinol oxidase polypeptide I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG01360
malus_domestica	MD13G1127000.v1.1
pyrus_communis	pycom461g00250
rosa_chinensis	RchiOBHm_Chr6g0256731 RchiOBHm_Chr6g0263801 RchiOBHm_MTg0498781 RchiOBHm_MTg0498791
rosa_laevigata	RLG00000000130 RLG00000000185 RLG00000000436 RLG00000000473 RLG00000000496 RLG00000002909
rosa_multiflora	Rmu_sc0000046.1_g000012 Rmu_sc0009290.1_g000004
rosa_roxburghii	Rroxscaffold_2G00118940 Rroxscaffold_2G00119310
rosa_rugosa	Rorug05G0209600
rosa_samantha	Rh1BG209200 Rh1BG209300 Rh1DG235800 Rh5CG352000 Rh6BG284800 Rh6CG178300 Rh6CG178400 Rh6DG170100 Rh6DG170200
rosa_wichuraiana	Rw4G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AbsI	CCTCGAGG	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	2418
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccBSI	CCGCTC	2 cut(s)	196, 2137
AccI	GTMKAC	1 cut(s)	258
AccIII	TCCGGA	1 cut(s)	357
AclWI	GGATC	4 cut(s)	300, 1079, 2134, 2147
AcsI	RAATTY	6 cut(s)	504, 1180, 1492, 1835, 1850, 2016
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	5 cut(s)	51, 468, 1242, 1518, 1866
AflII	CTTAAG	1 cut(s)	763
AflIII	ACRYGT	1 cut(s)	2437
AgeI	ACCGGT	1 cut(s)	898
AgsI	TTSAA	5 cut(s)	178, 1440, 1487, 1497, 1835
AjiI	CACGTC	3 cut(s)	1325, 2586, 2704
AjnI	CCWGG	7 cut(s)	39, 165, 182, 284, 850, 1173, 2542
AjuI	GAANNNNNNNTTGG	2 cut(s)	2414, 2446
Alw21I	GWGCWC	2 cut(s)	637, 1468
Alw26I	GTCTC	7 cut(s)	698, 1562, 1875, 1890, 1914, 2194, 2252
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	4 cut(s)	300, 1079, 2134, 2147
AlwNI	CAGNNNCTG	3 cut(s)	241, 1667, 2288
Ama87I	CYCGRG	3 cut(s)	113, 1986, 2349
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	4 cut(s)	162, 1786, 1901, 2240
ApaI	GGGCCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	6 cut(s)	1022, 1649, 1688, 1712, 1769, 2393
ApoI	RAATTY	6 cut(s)	504, 1180, 1492, 1835, 1850, 2016
AsiGI	ACCGGT	1 cut(s)	898
Asp700I	GAANNNNTTC	1 cut(s)	2088
AspA2I	CCTAGG	1 cut(s)	1682
AspLEI	GCGC	8 cut(s)	69, 223, 251, 318, 1604, 1717, 1803, 2531
AspS9I	GGNCC	8 cut(s)	37, 162, 163, 360, 1786, 1901, 2240, 2279
AsuC2I	CCSGG	3 cut(s)	495, 1987, 1988
AsuHPI	GGTGA	4 cut(s)	1138, 2309, 2438, 2722
AvaI	CYCGRG	3 cut(s)	113, 1986, 2349
AvaII	GGWCC	3 cut(s)	37, 360, 2279
AvrII	CCTAGG	1 cut(s)	1682
BaeGI	GKGCMC	3 cut(s)	166, 455, 637
BamHI	GGATCC	1 cut(s)	2139
BanII	GRGCYC	3 cut(s)	166, 970, 2344
BauI	CACGAG	1 cut(s)	2595
BbsI	GAAGAC	3 cut(s)	809, 895, 2235
Bbv12I	GWGCWC	2 cut(s)	637, 1468
BbvCI	CCTCAGC	1 cut(s)	2374
BbvI	GCAGC	6 cut(s)	1034, 1636, 1699, 1700, 1756, 2405
BccI	CCATC	6 cut(s)	377, 442, 1353, 1507, 1589, 2577
BceAI	ACGGC	5 cut(s)	561, 1241, 2227, 2381, 2641
BciT130I	CCWGG	7 cut(s)	41, 167, 184, 286, 852, 1175, 2544
BciVI	GTATCC	1 cut(s)	2532
BclI	TGATCA	4 cut(s)	933, 1032, 2266, 2290
BcnI	CCSGG	3 cut(s)	495, 1987, 1988
BcoDI	GTCTC	7 cut(s)	698, 1562, 1875, 1890, 1914, 2194, 2252
BfaI	CTAG	4 cut(s)	914, 1190, 1683, 2324
BfmI	CTRYAG	2 cut(s)	1125, 2099
BfrI	CTTAAG	1 cut(s)	763
BfuAI	ACCTGC	1 cut(s)	2418
BfuI	GTATCC	1 cut(s)	2532
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	8 cut(s)	239, 1023, 1650, 1689, 1713, 1750, 1770, 2394
BlnI	CCTAGG	1 cut(s)	1682
BlpI	GCTNAGC	1 cut(s)	712
BlsI	GCNGC	8 cut(s)	240, 1024, 1651, 1690, 1714, 1751, 1771, 2395
BmcAI	AGTACT	2 cut(s)	468, 1866
Bme18I	GGWCC	3 cut(s)	37, 360, 2279
BmeT110I	CYCGRG	3 cut(s)	113, 1986, 2349
BmgBI	CACGTC	3 cut(s)	1325, 2586, 2704
BmgT120I	GGNCC	8 cut(s)	37, 162, 163, 360, 1786, 1901, 2240, 2279
BmiI	GGNNCC	7 cut(s)	163, 164, 1255, 1787, 1902, 2096, 2141
BmrI	ACTGGG	2 cut(s)	750, 2250
BmsI	GCATC	1 cut(s)	1336
BmuI	ACTGGG	2 cut(s)	750, 2250
BpiI	GAAGAC	3 cut(s)	809, 895, 2235
BpmI	CTGGAG	3 cut(s)	462, 1512, 2565
Bpu10I	CCTNAGC	2 cut(s)	1370, 2374
Bpu1102I	GCTNAGC	1 cut(s)	712
BpuMI	CCSGG	3 cut(s)	495, 1987, 1988
Bsa29I	ATCGAT	1 cut(s)	1809
BsaHI	GRCGYC	1 cut(s)	9
BsaWI	WCCGGW	2 cut(s)	357, 898
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 361, 391
Bse118I	RCCGGY	2 cut(s)	583, 898
Bse1I	ACTGG	7 cut(s)	745, 1054, 1168, 1509, 1862, 2256, 2464
Bse3DI	GCAATG	1 cut(s)	1194
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	7 cut(s)	41, 167, 184, 286, 852, 1175, 2544
BseCI	ATCGAT	1 cut(s)	1809
BseGI	GGATG	6 cut(s)	1364, 1518, 1619, 1930, 2269, 2569
BseMI	GCAATG	1 cut(s)	1194
BseMII	CTCAG	6 cut(s)	233, 477, 726, 819, 2263, 2388
BseNI	ACTGG	7 cut(s)	745, 1054, 1168, 1509, 1862, 2256, 2464
BseRI	GAGGAG	2 cut(s)	2337, 2362
BseSI	GKGCMC	3 cut(s)	166, 455, 637
BseXI	GCAGC	6 cut(s)	1034, 1636, 1699, 1700, 1756, 2405
BseYI	CCCAGC	1 cut(s)	331
BshFI	GGCC	4 cut(s)	164, 1788, 1903, 2242
BshTI	ACCGGT	1 cut(s)	898
BshVI	ATCGAT	1 cut(s)	1809
BsiHKAI	GWGCWC	2 cut(s)	637, 1468
BsiHKCI	CYCGRG	3 cut(s)	113, 1986, 2349
BsiSI	CCGG	5 cut(s)	358, 495, 584, 899, 1987
BslFI	GGGAC	6 cut(s)	5, 89, 424, 751, 1028, 2238
BsmAI	GTCTC	7 cut(s)	698, 1562, 1875, 1890, 1914, 2194, 2252
BsmBI	CGTCTC	1 cut(s)	1562
BsmFI	GGGAC	6 cut(s)	5, 89, 424, 751, 1028, 2238
BsmI	GAATGC	2 cut(s)	1329, 1369
BsnI	GGCC	4 cut(s)	164, 1788, 1903, 2242
BsoBI	CYCGRG	3 cut(s)	113, 1986, 2349
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	6 cut(s)	166, 455, 637, 970, 1468, 2344
Bsp13I	TCCGGA	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	712
BspANI	GGCC	4 cut(s)	164, 1788, 1903, 2242
BspCNI	CTCAG	6 cut(s)	234, 476, 725, 820, 2262, 2387
BspDI	ATCGAT	1 cut(s)	1809
BspEI	TCCGGA	1 cut(s)	357
BspLI	GGNNCC	7 cut(s)	163, 164, 1255, 1787, 1902, 2096, 2141
BspMI	ACCTGC	1 cut(s)	2418
BspPI	GGATC	4 cut(s)	300, 1079, 2134, 2147
BspQI	GCTCTTC	2 cut(s)	2037, 2127
BspTI	CTTAAG	1 cut(s)	763
BsrBI	CCGCTC	2 cut(s)	196, 2137
BsrDI	GCAATG	1 cut(s)	1194
BsrFI	RCCGGY	2 cut(s)	583, 898
BsrI	ACTGG	7 cut(s)	745, 1054, 1168, 1509, 1862, 2256, 2464
BssAI	RCCGGY	2 cut(s)	583, 898
BssNAI	GTATAC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	2595
BssT1I	CCWWGG	5 cut(s)	1475, 1682, 2299, 2421, 2507
Bst1107I	GTATAC	1 cut(s)	259
Bst2BI	CACGAG	1 cut(s)	2595
Bst2UI	CCWGG	7 cut(s)	41, 167, 184, 286, 852, 1175, 2544
Bst4CI	ACNGT	6 cut(s)	751, 985, 1743, 1869, 1908, 2007
Bst6I	CTCTTC	3 cut(s)	2037, 2127, 2190
BstACI	GRCGYC	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	763
BstAPI	GCANNNNNTGC	2 cut(s)	1667, 1766
BstC8I	GCNNGC	5 cut(s)	71, 194, 585, 1654, 2340
BstDEI	CTNAG	9 cut(s)	242, 463, 712, 718, 828, 991, 1370, 2249, 2374
BstF5I	GGATG	6 cut(s)	1364, 1518, 1619, 1930, 2269, 2569
BstHHI	GCGC	8 cut(s)	69, 223, 251, 318, 1604, 1717, 1803, 2531
BstMAI	GTCTC	7 cut(s)	698, 1562, 1875, 1890, 1914, 2194, 2252
BstNI	CCWGG	7 cut(s)	41, 167, 184, 286, 852, 1175, 2544
BstNSI	RCATGY	2 cut(s)	459, 1764
BstSFI	CTRYAG	2 cut(s)	1125, 2099
BstSLI	GKGCMC	3 cut(s)	166, 455, 637
BstV1I	GCAGC	6 cut(s)	1034, 1636, 1699, 1700, 1756, 2405
BstV2I	GAAGAC	3 cut(s)	809, 895, 2235
BstX2I	RGATCY	2 cut(s)	292, 2139
BstXI	CCANNNNNNTGG	1 cut(s)	1476
BstYI	RGATCY	2 cut(s)	292, 2139
BstZ17I	GTATAC	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	1809
BsuI	GTATCC	1 cut(s)	2532
BsuRI	GGCC	4 cut(s)	164, 1788, 1903, 2242
BsuTUI	ATCGAT	1 cut(s)	1809
BtgZI	GCGATG	3 cut(s)	359, 602, 2279
BtrI	CACGTC	3 cut(s)	1325, 2586, 2704
BtsCI	GGATG	6 cut(s)	1364, 1518, 1619, 1930, 2269, 2569
BtsI	GCAGTG	2 cut(s)	1450, 1644
BtsIMutI	CAGTG	8 cut(s)	1047, 1161, 1450, 1502, 1644, 2003, 2263, 2457
BveI	ACCTGC	1 cut(s)	2418
Cac8I	GCNNGC	5 cut(s)	71, 194, 585, 1654, 2340
CaiI	CAGNNNCTG	3 cut(s)	241, 1667, 2288
CfoI	GCGC	8 cut(s)	69, 223, 251, 318, 1604, 1717, 1803, 2531
Cfr10I	RCCGGY	2 cut(s)	583, 898
Cfr13I	GGNCC	8 cut(s)	37, 162, 163, 360, 1786, 1901, 2240, 2279
Cfr9I	CCCGGG	1 cut(s)	1986
ClaI	ATCGAT	1 cut(s)	1809
CseI	GACGC	3 cut(s)	17, 212, 2344
Csp6I	GTAC	5 cut(s)	50, 467, 1241, 1517, 1865
CspAI	ACCGGT	1 cut(s)	898
CviQI	GTAC	5 cut(s)	50, 467, 1241, 1517, 1865
DdeI	CTNAG	9 cut(s)	242, 463, 712, 718, 828, 991, 1370, 2249, 2374
Eam1104I	CTCTTC	3 cut(s)	2037, 2127, 2190
EarI	CTCTTC	3 cut(s)	2037, 2127, 2190
EciI	GGCGGA	3 cut(s)	747, 2369, 2443
Eco130I	CCWWGG	5 cut(s)	1475, 1682, 2299, 2421, 2507
Eco24I	GRGCYC	3 cut(s)	166, 970, 2344
Eco32I	GATATC	1 cut(s)	1807
Eco47I	GGWCC	3 cut(s)	37, 360, 2279
Eco88I	CYCGRG	3 cut(s)	113, 1986, 2349
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRI	GAATTC	2 cut(s)	1492, 1835
EcoRII	CCWGG	7 cut(s)	39, 165, 182, 284, 850, 1173, 2542
EcoRV	GATATC	1 cut(s)	1807
EcoT14I	CCWWGG	5 cut(s)	1475, 1682, 2299, 2421, 2507
EcoT38I	GRGCYC	3 cut(s)	166, 970, 2344
ErhI	CCWWGG	5 cut(s)	1475, 1682, 2299, 2421, 2507
Esp3I	CGTCTC	1 cut(s)	1562
FalI	AAGNNNNNCTT	2 cut(s)	2187, 2219
FaqI	GGGAC	6 cut(s)	5, 89, 424, 751, 1028, 2238
FauI	CCCGC	5 cut(s)	78, 115, 282, 728, 2621
FauNDI	CATATG	1 cut(s)	975
FbaI	TGATCA	4 cut(s)	933, 1032, 2266, 2290
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	8 cut(s)	239, 1023, 1650, 1689, 1713, 1750, 1770, 2394
FokI	GGATG	6 cut(s)	1371, 1525, 1626, 1937, 2256, 2556
FriOI	GRGCYC	3 cut(s)	166, 970, 2344
Fsp4HI	GCNGC	8 cut(s)	239, 1023, 1650, 1689, 1713, 1750, 1770, 2394
FspBI	CTAG	4 cut(s)	914, 1190, 1683, 2324
GlaI	GCGC	8 cut(s)	68, 222, 250, 317, 1603, 1716, 1802, 2530
GluI	GCNGC	8 cut(s)	239, 1023, 1650, 1689, 1713, 1750, 1770, 2394
GsaI	CCCAGC	1 cut(s)	335
GsuI	CTGGAG	3 cut(s)	462, 1512, 2565
HaeIII	GGCC	4 cut(s)	164, 1788, 1903, 2242
HapII	CCGG	5 cut(s)	358, 495, 584, 899, 1987
HgaI	GACGC	3 cut(s)	17, 212, 2344
HhaI	GCGC	8 cut(s)	69, 223, 251, 318, 1604, 1717, 1803, 2531
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	8 cut(s)	67, 221, 249, 316, 1602, 1715, 1801, 2529
HinP1I	GCGC	8 cut(s)	67, 221, 249, 316, 1602, 1715, 1801, 2529
HincII	GTYRAC	3 cut(s)	282, 312, 1739
HindII	GTYRAC	3 cut(s)	282, 312, 1739
HpaI	GTTAAC	2 cut(s)	282, 312
HpaII	CCGG	5 cut(s)	358, 495, 584, 899, 1987
HphI	GGTGA	4 cut(s)	1138, 2309, 2438, 2722
Hpy166II	GTNNAC	8 cut(s)	259, 282, 312, 635, 747, 981, 1146, 1739
Hpy188I	TCNGA	9 cut(s)	621, 627, 829, 1939, 2024, 2094, 2279, 2334, 2491
Hpy188III	TCNNGA	9 cut(s)	88, 358, 380, 891, 1334, 1343, 1703, 1931, 2225
Hpy8I	GTNNAC	8 cut(s)	259, 282, 312, 635, 747, 981, 1146, 1739
Hpy99I	CGWCG	1 cut(s)	1329
HpyAV	CCTTC	2 cut(s)	208, 373
HpyCH4III	ACNGT	6 cut(s)	751, 985, 1743, 1869, 1908, 2007
HpyCH4IV	ACGT	4 cut(s)	996, 1324, 2585, 2703
HpyCH4V	TGCA	5 cut(s)	635, 1226, 1274, 1772, 1893
HpyF3I	CTNAG	9 cut(s)	242, 463, 712, 718, 828, 991, 1370, 2249, 2374
HpySE526I	ACGT	4 cut(s)	996, 1324, 2585, 2703
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	8 cut(s)	67, 221, 249, 316, 1602, 1715, 1801, 2529
Kpn2I	TCCGGA	1 cut(s)	357
KroI	GCCGGC	1 cut(s)	583
KroNI	GCCGGC	1 cut(s)	585
Ksp22I	TGATCA	4 cut(s)	933, 1032, 2266, 2290
KspAI	GTTAAC	2 cut(s)	282, 312
LguI	GCTCTTC	2 cut(s)	2037, 2127
LmnI	GCTCC	9 cut(s)	705, 791, 1253, 1471, 1661, 1987, 2174, 2375, 2558
Lsp1109I	GCAGC	6 cut(s)	1034, 1636, 1699, 1700, 1756, 2405
LweI	GCATC	1 cut(s)	1336
MaeI	CTAG	4 cut(s)	914, 1190, 1683, 2324
MaeII	ACGT	4 cut(s)	996, 1324, 2585, 2703
MaeIII	GTNAC	5 cut(s)	335, 1426, 2125, 2440, 2710
MbiI	CCGCTC	2 cut(s)	196, 2137
MflI	RGATCY	2 cut(s)	292, 2139
MhlI	GDGCHC	6 cut(s)	166, 455, 637, 970, 1468, 2344
MluI	ACGCGT	1 cut(s)	2437
MlyI	GAGTC	5 cut(s)	111, 406, 1152, 2019, 2243
MmeI	TCCRAC	2 cut(s)	1049, 2047
MroI	TCCGGA	1 cut(s)	357
MroNI	GCCGGC	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	2088
MseI	TTAA	8 cut(s)	281, 311, 320, 539, 560, 659, 707, 764
MslI	CAYNNNNRTG	1 cut(s)	1507
MspA1I	CMGCKG	3 cut(s)	238, 2406, 2724
MspCI	CTTAAG	1 cut(s)	763
MspI	CCGG	5 cut(s)	358, 495, 584, 899, 1987
Mva1269I	GAATGC	2 cut(s)	1329, 1369
MvaI	CCWGG	7 cut(s)	41, 167, 184, 286, 852, 1175, 2544
NaeI	GCCGGC	1 cut(s)	585
NciI	CCSGG	3 cut(s)	495, 1987, 1988
NdeI	CATATG	1 cut(s)	975
NgoMIV	GCCGGC	1 cut(s)	583
NlaIV	GGNNCC	7 cut(s)	163, 164, 1255, 1787, 1902, 2096, 2141
NmuCI	GTSAC	1 cut(s)	2710
NspI	RCATGY	2 cut(s)	459, 1764
PaeR7I	CTCGAG	1 cut(s)	113
PciSI	GCTCTTC	2 cut(s)	2037, 2127
PctI	GAATGC	2 cut(s)	1329, 1369
PdiI	GCCGGC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	2088
PfeI	GAWTC	8 cut(s)	472, 517, 622, 855, 1934, 2079, 2357, 2486
PflMI	CCANNNNNTGG	1 cut(s)	46
PinAI	ACCGGT	1 cut(s)	898
PkrI	GCNGC	8 cut(s)	240, 1024, 1651, 1690, 1714, 1751, 1771, 2395
PleI	GAGTC	5 cut(s)	110, 406, 1152, 2019, 2242
PpsI	GAGTC	5 cut(s)	110, 406, 1152, 2019, 2242
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	7 cut(s)	39, 165, 182, 284, 850, 1173, 2542
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	7 cut(s)	39, 165, 182, 284, 850, 1173, 2542
PspN4I	GGNNCC	7 cut(s)	163, 164, 1255, 1787, 1902, 2096, 2141
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	8 cut(s)	37, 162, 163, 360, 1786, 1901, 2240, 2279
PspXI	VCTCGAGB	1 cut(s)	113
PstNI	CAGNNNCTG	3 cut(s)	241, 1667, 2288
PsuI	RGATCY	2 cut(s)	292, 2139
PvuII	CAGCTG	1 cut(s)	2406
RsaI	GTAC	5 cut(s)	51, 468, 1242, 1518, 1866
RsaNI	GTAC	5 cut(s)	50, 467, 1241, 1517, 1865
RseI	CAYNNNNRTG	1 cut(s)	1507
SapI	GCTCTTC	2 cut(s)	2037, 2127
SaqAI	TTAA	8 cut(s)	281, 311, 320, 539, 560, 659, 707, 764
SatI	GCNGC	8 cut(s)	239, 1023, 1650, 1689, 1713, 1750, 1770, 2394
Sau96I	GGNCC	8 cut(s)	37, 162, 163, 360, 1786, 1901, 2240, 2279
ScaI	AGTACT	2 cut(s)	468, 1866
SchI	GAGTC	5 cut(s)	111, 406, 1152, 2019, 2243
SduI	GDGCHC	6 cut(s)	166, 455, 637, 970, 1468, 2344
SfaNI	GCATC	1 cut(s)	1336
SfcI	CTRYAG	2 cut(s)	1125, 2099
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	3 cut(s)	37, 360, 2279
SlaI	CTCGAG	1 cut(s)	113
SmaI	CCCGGG	1 cut(s)	1988
SmiMI	CAYNNNNRTG	1 cut(s)	1507
SmlI	CTYRAG	2 cut(s)	113, 763
SmoI	CTYRAG	2 cut(s)	113, 763
SspI	AATATT	2 cut(s)	667, 1677
SspMI	CTAG	4 cut(s)	914, 1190, 1683, 2324
StyI	CCWWGG	5 cut(s)	1475, 1682, 2299, 2421, 2507
TaaI	ACNGT	6 cut(s)	751, 985, 1743, 1869, 1908, 2007
TaiI	ACGT	4 cut(s)	999, 1327, 2588, 2706
TaqI	TCGA	8 cut(s)	114, 881, 1094, 1809, 2028, 2082, 2619, 2683
TatI	WGTACW	3 cut(s)	466, 1240, 1864
TauI	GCSGC	2 cut(s)	241, 1752
TfiI	GAWTC	8 cut(s)	472, 517, 622, 855, 1934, 2079, 2357, 2486
Tru1I	TTAA	8 cut(s)	281, 311, 320, 539, 560, 659, 707, 764
Tru9I	TTAA	8 cut(s)	281, 311, 320, 539, 560, 659, 707, 764
TscAI	CASTG	8 cut(s)	1054, 1168, 1450, 1509, 1651, 2010, 2263, 2464
TseFI	GTSAC	1 cut(s)	2710
TseI	GCWGC	6 cut(s)	1022, 1649, 1688, 1712, 1769, 2393
Tsp45I	GTSAC	1 cut(s)	2710
TspGWI	ACGGA	2 cut(s)	21, 1384
TspMI	CCCGGG	1 cut(s)	1986
TspRI	CASTG	8 cut(s)	1054, 1168, 1450, 1509, 1651, 2010, 2263, 2464
Van91I	CCANNNNNTGG	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	763
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	3 cut(s)	37, 360, 2279
XapI	RAATTY	6 cut(s)	504, 1180, 1492, 1835, 1850, 2016
XceI	RCATGY	2 cut(s)	459, 1764
XhoI	CTCGAG	1 cut(s)	113
XmaI	CCCGGG	1 cut(s)	1986
XmaJI	CCTAGG	1 cut(s)	1682
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	2088
XspI	CTAG	4 cut(s)	914, 1190, 1683, 2324
ZrmI	AGTACT	2 cut(s)	468, 1866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.