Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005840

Physical Location & Seq

Genomic Coordinates Reverse (-)

1100417 .. 1103652

Gene Structure 3236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

ATGAAAGACGCCCAAAAAGTCCCATGCTTTCCGTTGGTCCAGGTTTTGGTACAGACCCCCCTCCTGCGCCCGCGAGGGATTTCATTCCTGACCTCAACGCGAGTCCCCGCCCTCGAGGCTCTCATAATAGAGATAGAGGAAACCCAACGAGAGCTAAAGGGGGCCCAGGAAGAATTGAAGTCCTGGGAGGGCGAGCGGAGGGCTTTCTTTGAGAAGGAAGCGCGTCTGTATCATCAGCGGCTGAGAAGCGCGGAGGTATACCGCGAATACCAAGCTCTGTTAACCAGGCGGGATCTCTGGGAGGCAGAGTTAACGCGCTTAAAGGAACTGCTGGGTAACAGGGCGATGAGGGCTTTCCGGACCTTCCCAACTACCTCTCCCGATGGTCATAAAAAAGCCCAAGATATAGGGACTCTATATTTCATCTTCGGTGCTATTGCTGGAGTGATGGGCACATGCTTCTCAGTACTGATTCGTATGGAATTAGCACGACCCGGCGATCAAATTCTTGGTGGGAATCATCAACTTTATAATGTTTTAATAACGGCTCATGCTTTTTTAATGATCTTTTTTATGGTTATGCCGGCGATGATAGGTGGATTTGGTAATTGGTTTGTTCCGATTCTGATAGGTGCACCTGACATGGCATTTCCACGATTAAATAATATTTCATTCTGGTTGTTGCCACCAAGTCTCTTGCTCCTATTAAGCTCAGCCTTAGTAGAAGTGGGTAGCGGGACTGGGTGGACGGTCTATCCGCCCTTAAGTGGTATTACCAGCCATTCTGGGGGAGCTGTTGATTTAGCAATTTTTAGTCTTCATCTATCTGGTATTTCATCCATTTTAGGTTCTATCAATTTTATAACAACTATCTTCAACATGCGTGGACCTGGAATGACTATGCATAGATTACCCCTATTTGTGTGGTCCGTTCTAGTGACAGCATTCCTACTTTTATTATCACTTCCGGTACTGGCAGGGGCAATTACCATGTTATTAACCGATCGAAACTTTAATACAACCTTTTTTGATCCCGCTGGGGGGGGAGACCCCATATTATACCAGCATCTCTTTTGGTTTTTCGGTCATCCAGAGGTGTATATTCTCATTCTGCCTGGATTCGGTATCATAAGTCATATCGTTTCGACTTTTTCGGGAAAACCGGTCTTCGGGTATCTAGGCATGGTTTATGCCATGATCAGTATAGGTGTTCTTGGATTTCTTGTTTGGGCTCATCATATGTTTACTGTGGGCTTAGACGTTGATACCCGTGCCTACTTTACCGCAGCTACCATGATCATAGCTGTCCCCACTGGAATAAAAATCTTTAGTTGGATCGCTACCATGTGGGGGGGTTCGATACAATACAAAACACCCATGTTATTTGCTGTAGGGTTCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCTGGCAAATTCTGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGCACATTTCCATTATGTACTTTCTATGGGAGCCGTTTTTGCTTTATTTGCAGGATTTTACTATTGGGTGGGAAAAATCTTTGGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGATCACTTTTTTCGGGGTTAATCTGACCTTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCAGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTTGTTGTTTCTTCGTGGTCGTAACAATCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGGTCAGGGCCTAGAGCGCATCCGATTCGAAAGTCCTTTCCTAAACCACTTCCCGTTCAGTTGTAAAAATGATGGTTGCGCTTGGTGCGGATGTTTTACTTTTCATTCCCTTATCGTTATCACTGCTGCCTGCTCCGCAGGAACTGCTACAATATTTCCTAGGGCAGCCACTCACTATCCTGATGTGGCTGCGCTTTGTAAATCATCGTTTAGTCAACTGTCCTGCCGCACTAAAGCATGTTTTGCTGCAATCCCTTTTGGGGGCCAAATACCTCCGCGCGATATCGATTTGCTTCTTCGTTCTTCATTTGAATTCTTACATTTAGAATTTTACCAACCAGTACTGTCTCAACTACTTATGTCTCTATGCACCGAGGGGCCACAGTCTCGCTTCTATTTGGATGTTCTGGAATCGGATAGATTTTCAGTTCTATGGCAAAGACAACAGAGGGAATTAGCTCCCCGGGTAGAGGGAGAGGCACTGTTCCAAGAAATTTTCCGACTCGAAAAGCAAAATGAAGAGCGTGAAGCACAGAACGCTATTCTTCGCCAACGAATCGAAAATCTTCGGAACCTACAGCCCCCCTATTTTGAGTTTATGGTAACAGAAGAGCGGATCCAATACCAAGACGACTTCATTCATTTGAGGGGAGCAGAGCAGTCAAAGAATGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGTAAATCGCCGGTTGGGTTGGTCCAACCAAAAAAGACATGGGACGACTTTACCATTGCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015672 GO:0015980 GO:0015988 GO:0015990 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX1

Protein Analysis

881

Amino Acids

98.99

Weight (kDa)

7.09

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX1	PF00115	135 - 582	8.1e-162	Cytochrome C and Quinol oxidase polypeptide I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG01360
malus_domestica	MD13G1127000.v1.1
pyrus_communis	pycom461g00250
rosa_chinensis	RchiOBHm_Chr6g0256731 RchiOBHm_Chr6g0263801 RchiOBHm_MTg0498781 RchiOBHm_MTg0498791
rosa_laevigata	RLG00000000130 RLG00000000185 RLG00000000436 RLG00000000473 RLG00000000496 RLG00000002909
rosa_multiflora	Rmu_sc0000046.1_g000012 Rmu_sc0009290.1_g000004
rosa_roxburghii	Rroxscaffold_2G00118940 Rroxscaffold_2G00119310
rosa_rugosa	Rorug05G0209600
rosa_samantha	Rh1BG209200 Rh1BG209300 Rh1DG235800 Rh5CG352000 Rh6BG284800 Rh6CG178300 Rh6CG178400 Rh6DG170100 Rh6DG170200
rosa_wichuraiana	Rw4G000200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	531, 863
AbsI	CCTCGAGG	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccBSI	CCGCTC	2 cut(s)	196, 2482
AccI	GTMKAC	1 cut(s)	258
AccII	CGCG	8 cut(s)	73, 100, 223, 251, 264, 316, 2146, 2148
AccIII	TCCGGA	1 cut(s)	357
AclWI	GGATC	6 cut(s)	300, 1025, 1343, 1619, 2479, 2492
AcsI	RAATTY	6 cut(s)	504, 1444, 1846, 2180, 2195, 2361
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	5 cut(s)	51, 468, 972, 1506, 2211
AflII	CTTAAG	1 cut(s)	763
AgeI	ACCGGT	1 cut(s)	1162
AgsI	TTSAA	6 cut(s)	178, 877, 1794, 1841, 1851, 2180
AjiI	CACGTC	1 cut(s)	1679
AjnI	CCWGG	7 cut(s)	39, 165, 182, 284, 889, 1114, 1437
AluBI	AGCT	7 cut(s)	154, 275, 711, 794, 1289, 1304, 2327
AluI	AGCT	7 cut(s)	154, 275, 711, 794, 1289, 1304, 2327
Alw21I	GWGCWC	2 cut(s)	637, 1822
Alw26I	GTCTC	6 cut(s)	698, 1041, 2220, 2235, 2259, 2539
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	6 cut(s)	300, 1025, 1343, 1619, 2479, 2492
AlwNI	CAGNNNCTG	2 cut(s)	241, 2012
Ama87I	CYCGRG	2 cut(s)	113, 2331
Aor13HI	TCCGGA	1 cut(s)	357
AoxI	GGCC	4 cut(s)	162, 1876, 2131, 2246
ApaI	GGGCCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	5 cut(s)	1286, 1994, 2033, 2057, 2114
ApoI	RAATTY	6 cut(s)	504, 1444, 1846, 2180, 2195, 2361
AsiGI	ACCGGT	1 cut(s)	1162
Asp700I	GAANNNNTTC	1 cut(s)	2433
AspA2I	CCTAGG	1 cut(s)	2027
AspLEI	GCGC	8 cut(s)	69, 223, 251, 318, 1887, 1949, 2062, 2148
AsuC2I	CCSGG	3 cut(s)	495, 2332, 2333
AsuHPI	GGTGA	1 cut(s)	1402
AsuII	TTCGAA	1 cut(s)	1896
AvaI	CYCGRG	2 cut(s)	113, 2331
AvaII	GGWCC	5 cut(s)	37, 360, 887, 927, 2598
AvrII	CCTAGG	1 cut(s)	2027
BaeGI	GKGCMC	3 cut(s)	166, 455, 637
BamHI	GGATCC	1 cut(s)	2484
BanII	GRGCYC	2 cut(s)	166, 1234
BbsI	GAAGAC	3 cut(s)	809, 1159, 2580
Bbv12I	GWGCWC	2 cut(s)	637, 1822
BbvI	GCAGC	5 cut(s)	1298, 1981, 2044, 2045, 2101
BccI	CCATC	5 cut(s)	377, 442, 1707, 1861, 1934
BceAI	ACGGC	2 cut(s)	561, 1505
BcgI	CGANNNNNNTGC	2 cut(s)	1876, 1910
BciT130I	CCWGG	7 cut(s)	41, 167, 184, 286, 891, 1116, 1439
BclI	TGATCA	2 cut(s)	1197, 1296
BcnI	CCSGG	3 cut(s)	495, 2332, 2333
BcoDI	GTCTC	6 cut(s)	698, 1041, 2220, 2235, 2259, 2539
BfaI	CTAG	5 cut(s)	935, 1178, 1454, 1880, 2028
BfmI	CTRYAG	2 cut(s)	1389, 2444
BfrI	CTTAAG	1 cut(s)	763
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	7 cut(s)	239, 1287, 1995, 2034, 2058, 2095, 2115
BlnI	CCTAGG	1 cut(s)	2027
BlpI	GCTNAGC	1 cut(s)	712
BlsI	GCNGC	7 cut(s)	240, 1288, 1996, 2035, 2059, 2096, 2116
BmcAI	AGTACT	2 cut(s)	468, 2211
Bme18I	GGWCC	5 cut(s)	37, 360, 887, 927, 2598
BmeT110I	CYCGRG	2 cut(s)	113, 2331
BmgBI	CACGTC	1 cut(s)	1679
BmiI	GGNNCC	7 cut(s)	163, 164, 1519, 2132, 2247, 2441, 2486
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	3 cut(s)	1075, 1690, 1896
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	3 cut(s)	809, 1159, 2580
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	1724
Bpu1102I	GCTNAGC	1 cut(s)	712
Bpu14I	TTCGAA	1 cut(s)	1896
BpuMI	CCSGG	3 cut(s)	495, 2332, 2333
Bsa29I	ATCGAT	1 cut(s)	2154
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	1041
BsaJI	CCNNGG	7 cut(s)	165, 183, 1829, 2027, 2241, 2330, 2331
BsaWI	WCCGGW	3 cut(s)	357, 967, 1162
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 361, 391
Bse118I	RCCGGY	3 cut(s)	583, 1162, 2586
Bse1I	ACTGG	6 cut(s)	745, 978, 1318, 1432, 1863, 2207
Bse3DI	GCAATG	2 cut(s)	1458, 2630
BseAI	TCCGGA	1 cut(s)	357
BseBI	CCWGG	7 cut(s)	41, 167, 184, 286, 891, 1116, 1439
BseCI	ATCGAT	1 cut(s)	2154
BseDI	CCNNGG	7 cut(s)	165, 183, 1829, 2027, 2241, 2330, 2331
BseGI	GGATG	7 cut(s)	836, 1087, 1718, 1872, 1887, 1964, 2275
BseMI	GCAATG	2 cut(s)	1458, 2630
BseMII	CTCAG	3 cut(s)	233, 477, 726
BseNI	ACTGG	6 cut(s)	745, 978, 1318, 1432, 1863, 2207
BseSI	GKGCMC	3 cut(s)	166, 455, 637
BseXI	GCAGC	5 cut(s)	1298, 1981, 2044, 2045, 2101
BseYI	CCCAGC	2 cut(s)	331, 1037
Bsh1236I	CGCG	8 cut(s)	73, 100, 223, 251, 264, 316, 2146, 2148
Bsh1285I	CGRYCG	1 cut(s)	1006
BshFI	GGCC	4 cut(s)	164, 1878, 2133, 2248
BshTI	ACCGGT	1 cut(s)	1162
BshVI	ATCGAT	1 cut(s)	2154
BsiEI	CGRYCG	1 cut(s)	1006
BsiHKAI	GWGCWC	2 cut(s)	637, 1822
BsiHKCI	CYCGRG	2 cut(s)	113, 2331
BsiSI	CCGG	7 cut(s)	358, 495, 584, 968, 1163, 2332, 2587
BslFI	GGGAC	6 cut(s)	5, 89, 424, 751, 1292, 2632
BsmAI	GTCTC	6 cut(s)	698, 1041, 2220, 2235, 2259, 2539
BsmFI	GGGAC	6 cut(s)	5, 89, 424, 751, 1292, 2632
BsmI	GAATGC	3 cut(s)	944, 1683, 1723
BsnI	GGCC	4 cut(s)	164, 1878, 2133, 2248
Bso31I	GGTCTC	1 cut(s)	1041
BsoBI	CYCGRG	2 cut(s)	113, 2331
Bsp119I	TTCGAA	1 cut(s)	1896
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	5 cut(s)	166, 455, 637, 1234, 1822
Bsp13I	TCCGGA	1 cut(s)	357
Bsp1720I	GCTNAGC	1 cut(s)	712
BspANI	GGCC	4 cut(s)	164, 1878, 2133, 2248
BspCNI	CTCAG	3 cut(s)	234, 476, 725
BspDI	ATCGAT	1 cut(s)	2154
BspEI	TCCGGA	1 cut(s)	357
BspFNI	CGCG	8 cut(s)	73, 100, 223, 251, 264, 316, 2146, 2148
BspLI	GGNNCC	7 cut(s)	163, 164, 1519, 2132, 2247, 2441, 2486
BspPI	GGATC	6 cut(s)	300, 1025, 1343, 1619, 2479, 2492
BspQI	GCTCTTC	2 cut(s)	2382, 2472
BspT104I	TTCGAA	1 cut(s)	1896
BspTI	CTTAAG	1 cut(s)	763
BspTNI	GGTCTC	1 cut(s)	1041
BsrBI	CCGCTC	2 cut(s)	196, 2482
BsrDI	GCAATG	2 cut(s)	1458, 2630
BsrFI	RCCGGY	3 cut(s)	583, 1162, 2586
BsrI	ACTGG	6 cut(s)	745, 978, 1318, 1432, 1863, 2207
BssAI	RCCGGY	3 cut(s)	583, 1162, 2586
BssECI	CCNNGG	7 cut(s)	165, 183, 1829, 2027, 2241, 2330, 2331
BssNAI	GTATAC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	1829, 2027
Bst1107I	GTATAC	1 cut(s)	259
Bst2UI	CCWGG	7 cut(s)	41, 167, 184, 286, 891, 1116, 1439
Bst4CI	ACNGT	6 cut(s)	751, 1249, 2088, 2214, 2253, 2352
Bst6I	CTCTTC	3 cut(s)	2382, 2472, 2535
BstACI	GRCGYC	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	763
BstAPI	GCANNNNNTGC	2 cut(s)	2012, 2111
BstBI	TTCGAA	1 cut(s)	1896
BstC8I	GCNNGC	4 cut(s)	71, 194, 585, 1999
BstDEI	CTNAG	7 cut(s)	242, 463, 712, 718, 1255, 1657, 1724
BstF5I	GGATG	7 cut(s)	836, 1087, 1718, 1872, 1887, 1964, 2275
BstFNI	CGCG	8 cut(s)	73, 100, 223, 251, 264, 316, 2146, 2148
BstHHI	GCGC	8 cut(s)	69, 223, 251, 318, 1887, 1949, 2062, 2148
BstMAI	GTCTC	6 cut(s)	698, 1041, 2220, 2235, 2259, 2539
BstMCI	CGRYCG	1 cut(s)	1006
BstNI	CCWGG	7 cut(s)	41, 167, 184, 286, 891, 1116, 1439
BstNSI	RCATGY	3 cut(s)	459, 883, 2109
BstSFI	CTRYAG	2 cut(s)	1389, 2444
BstSLI	GKGCMC	3 cut(s)	166, 455, 637
BstUI	CGCG	8 cut(s)	73, 100, 223, 251, 264, 316, 2146, 2148
BstV1I	GCAGC	5 cut(s)	1298, 1981, 2044, 2045, 2101
BstV2I	GAAGAC	3 cut(s)	809, 1159, 2580
BstX2I	RGATCY	2 cut(s)	292, 2484
BstXI	CCANNNNNNTGG	1 cut(s)	1830
BstYI	RGATCY	2 cut(s)	292, 2484
BstZ17I	GTATAC	1 cut(s)	259
Bsu15I	ATCGAT	1 cut(s)	2154
BsuRI	GGCC	4 cut(s)	164, 1878, 2133, 2248
BsuTUI	ATCGAT	1 cut(s)	2154
BtgZI	GCGATG	2 cut(s)	359, 602
BtrI	CACGTC	1 cut(s)	1679
BtsCI	GGATG	7 cut(s)	836, 1087, 1718, 1872, 1887, 1964, 2275
BtsI	GCAGTG	2 cut(s)	1804, 1989
BtsIMutI	CAGTG	6 cut(s)	1311, 1425, 1804, 1856, 1989, 2348
Cac8I	GCNNGC	4 cut(s)	71, 194, 585, 1999
CaiI	CAGNNNCTG	2 cut(s)	241, 2012
CfoI	GCGC	8 cut(s)	69, 223, 251, 318, 1887, 1949, 2062, 2148
Cfr10I	RCCGGY	3 cut(s)	583, 1162, 2586
Cfr9I	CCCGGG	1 cut(s)	2331
ClaI	ATCGAT	1 cut(s)	2154
CseI	GACGC	2 cut(s)	17, 212
Csp6I	GTAC	5 cut(s)	50, 467, 971, 1505, 2210
CspAI	ACCGGT	1 cut(s)	1162
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviQI	GTAC	5 cut(s)	50, 467, 971, 1505, 2210
DdeI	CTNAG	7 cut(s)	242, 463, 712, 718, 1255, 1657, 1724
Eam1104I	CTCTTC	3 cut(s)	2382, 2472, 2535
EarI	CTCTTC	3 cut(s)	2382, 2472, 2535
EciI	GGCGGA	1 cut(s)	747
Eco130I	CCWWGG	2 cut(s)	1829, 2027
Eco24I	GRGCYC	2 cut(s)	166, 1234
Eco31I	GGTCTC	1 cut(s)	1041
Eco32I	GATATC	1 cut(s)	2152
Eco47I	GGWCC	5 cut(s)	37, 360, 887, 927, 2598
Eco88I	CYCGRG	2 cut(s)	113, 2331
EcoO109I	RGGNCCY	2 cut(s)	162, 1876
EcoRI	GAATTC	2 cut(s)	1846, 2180
EcoRII	CCWGG	7 cut(s)	39, 165, 182, 284, 889, 1114, 1437
EcoRV	GATATC	1 cut(s)	2152
EcoT14I	CCWWGG	2 cut(s)	1829, 2027
EcoT22I	ATGCAT	2 cut(s)	906, 1653
EcoT38I	GRGCYC	2 cut(s)	166, 1234
ErhI	CCWWGG	2 cut(s)	1829, 2027
FalI	AAGNNNNNCTT	2 cut(s)	2532, 2564
FaqI	GGGAC	6 cut(s)	5, 89, 424, 751, 1292, 2632
FauI	CCCGC	5 cut(s)	78, 115, 282, 728, 1042
FauNDI	CATATG	1 cut(s)	1239
FbaI	TGATCA	2 cut(s)	1197, 1296
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	7 cut(s)	239, 1287, 1995, 2034, 2058, 2095, 2115
FokI	GGATG	7 cut(s)	823, 1074, 1725, 1874, 1879, 1971, 2282
FriOI	GRGCYC	2 cut(s)	166, 1234
Fsp4HI	GCNGC	7 cut(s)	239, 1287, 1995, 2034, 2058, 2095, 2115
FspBI	CTAG	5 cut(s)	935, 1178, 1454, 1880, 2028
GlaI	GCGC	8 cut(s)	68, 222, 250, 317, 1886, 1948, 2061, 2147
GluI	GCNGC	7 cut(s)	239, 1287, 1995, 2034, 2058, 2095, 2115
GsaI	CCCAGC	2 cut(s)	335, 1041
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	164, 1878, 2133, 2248
HapII	CCGG	7 cut(s)	358, 495, 584, 968, 1163, 2332, 2587
HgaI	GACGC	2 cut(s)	17, 212
HhaI	GCGC	8 cut(s)	69, 223, 251, 318, 1887, 1949, 2062, 2148
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	8 cut(s)	67, 221, 249, 316, 1885, 1947, 2060, 2146
HinP1I	GCGC	8 cut(s)	67, 221, 249, 316, 1885, 1947, 2060, 2146
HincII	GTYRAC	3 cut(s)	282, 312, 2084
HindII	GTYRAC	3 cut(s)	282, 312, 2084
HpaI	GTTAAC	2 cut(s)	282, 312
HpaII	CCGG	7 cut(s)	358, 495, 584, 968, 1163, 2332, 2587
HphI	GGTGA	1 cut(s)	1402
Hpy166II	GTNNAC	9 cut(s)	259, 282, 312, 635, 747, 887, 1245, 1410, 2084
Hpy188I	TCNGA	8 cut(s)	621, 627, 1575, 1635, 1892, 2284, 2369, 2439
Hpy8I	GTNNAC	9 cut(s)	259, 282, 312, 635, 747, 887, 1245, 1410, 2084
Hpy99I	CGWCG	1 cut(s)	1683
HpyAV	CCTTC	3 cut(s)	208, 373, 1648
HpyCH4III	ACNGT	6 cut(s)	751, 1249, 2088, 2214, 2253, 2352
HpyCH4IV	ACGT	3 cut(s)	1260, 1678, 2577
HpyCH4V	TGCA	7 cut(s)	635, 904, 1490, 1538, 1651, 2117, 2238
HpyF3I	CTNAG	7 cut(s)	242, 463, 712, 718, 1255, 1657, 1724
HpySE526I	ACGT	3 cut(s)	1260, 1678, 2577
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	8 cut(s)	67, 221, 249, 316, 1885, 1947, 2060, 2146
Kpn2I	TCCGGA	1 cut(s)	357
KroI	GCCGGC	1 cut(s)	583
KroNI	GCCGGC	1 cut(s)	585
Ksp22I	TGATCA	2 cut(s)	1197, 1296
KspAI	GTTAAC	2 cut(s)	282, 312
LguI	GCTCTTC	2 cut(s)	2382, 2472
LmnI	GCTCC	7 cut(s)	705, 791, 1517, 1825, 2006, 2332, 2519
Lsp1109I	GCAGC	5 cut(s)	1298, 1981, 2044, 2045, 2101
LweI	GCATC	3 cut(s)	1075, 1690, 1896
MaeI	CTAG	5 cut(s)	935, 1178, 1454, 1880, 2028
MaeII	ACGT	3 cut(s)	1260, 1678, 2577
MaeIII	GTNAC	4 cut(s)	335, 937, 1780, 2470
MbiI	CCGCTC	2 cut(s)	196, 2482
MflI	RGATCY	2 cut(s)	292, 2484
MhlI	GDGCHC	5 cut(s)	166, 455, 637, 1234, 1822
MlyI	GAGTC	4 cut(s)	111, 406, 1416, 2364
MmeI	TCCRAC	4 cut(s)	1313, 1553, 2392, 2625
Mph1103I	ATGCAT	2 cut(s)	906, 1653
MroI	TCCGGA	1 cut(s)	357
MroNI	GCCGGC	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	2433
MslI	CAYNNNNRTG	1 cut(s)	1861
MspA1I	CMGCKG	2 cut(s)	238, 1037
MspCI	CTTAAG	1 cut(s)	763
MspI	CCGG	7 cut(s)	358, 495, 584, 968, 1163, 2332, 2587
Mva1269I	GAATGC	3 cut(s)	944, 1683, 1723
MvaI	CCWGG	7 cut(s)	41, 167, 184, 286, 891, 1116, 1439
MvnI	CGCG	8 cut(s)	73, 100, 223, 251, 264, 316, 2146, 2148
NaeI	GCCGGC	1 cut(s)	585
NciI	CCSGG	3 cut(s)	495, 2332, 2333
NdeI	CATATG	1 cut(s)	1239
NgoMIV	GCCGGC	1 cut(s)	583
NlaIV	GGNNCC	7 cut(s)	163, 164, 1519, 2132, 2247, 2441, 2486
NmuCI	GTSAC	1 cut(s)	937
NsiI	ATGCAT	2 cut(s)	906, 1653
NspI	RCATGY	3 cut(s)	459, 883, 2109
NspV	TTCGAA	1 cut(s)	1896
PaeR7I	CTCGAG	1 cut(s)	113
PciSI	GCTCTTC	2 cut(s)	2382, 2472
PctI	GAATGC	3 cut(s)	944, 1683, 1723
PdiI	GCCGGC	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	2433
PfeI	GAWTC	7 cut(s)	472, 517, 622, 1119, 1893, 2279, 2424
PflMI	CCANNNNNTGG	1 cut(s)	46
PinAI	ACCGGT	1 cut(s)	1162
PkrI	GCNGC	7 cut(s)	240, 1288, 1996, 2035, 2059, 2096, 2116
Ple19I	CGATCG	1 cut(s)	1006
PleI	GAGTC	4 cut(s)	110, 406, 1416, 2364
PpsI	GAGTC	4 cut(s)	110, 406, 1416, 2364
PsiI	TTATAA	2 cut(s)	531, 863
Psp6I	CCWGG	7 cut(s)	39, 165, 182, 284, 889, 1114, 1437
PspFI	CCCAGC	2 cut(s)	331, 1037
PspGI	CCWGG	7 cut(s)	39, 165, 182, 284, 889, 1114, 1437
PspN4I	GGNNCC	7 cut(s)	163, 164, 1519, 2132, 2247, 2441, 2486
PspOMI	GGGCCC	1 cut(s)	162
PspXI	VCTCGAGB	1 cut(s)	113
PstNI	CAGNNNCTG	2 cut(s)	241, 2012
PsuI	RGATCY	2 cut(s)	292, 2484
PvuI	CGATCG	1 cut(s)	1006
RsaI	GTAC	5 cut(s)	51, 468, 972, 1506, 2211
RsaNI	GTAC	5 cut(s)	50, 467, 971, 1505, 2210
RseI	CAYNNNNRTG	1 cut(s)	1861
SapI	GCTCTTC	2 cut(s)	2382, 2472
SatI	GCNGC	7 cut(s)	239, 1287, 1995, 2034, 2058, 2095, 2115
ScaI	AGTACT	2 cut(s)	468, 2211
SchI	GAGTC	4 cut(s)	111, 406, 1416, 2364
SduI	GDGCHC	5 cut(s)	166, 455, 637, 1234, 1822
SfaNI	GCATC	3 cut(s)	1075, 1690, 1896
SfcI	CTRYAG	2 cut(s)	1389, 2444
Sfr274I	CTCGAG	1 cut(s)	113
SfuI	TTCGAA	1 cut(s)	1896
SinI	GGWCC	5 cut(s)	37, 360, 887, 927, 2598
SlaI	CTCGAG	1 cut(s)	113
SmaI	CCCGGG	1 cut(s)	2333
SmiMI	CAYNNNNRTG	1 cut(s)	1861
SmlI	CTYRAG	2 cut(s)	113, 763
SmoI	CTYRAG	2 cut(s)	113, 763
SspI	AATATT	2 cut(s)	667, 2022
SspMI	CTAG	5 cut(s)	935, 1178, 1454, 1880, 2028
StyI	CCWWGG	2 cut(s)	1829, 2027
TaaI	ACNGT	6 cut(s)	751, 1249, 2088, 2214, 2253, 2352
TaiI	ACGT	3 cut(s)	1263, 1681, 2580
TaqI	TCGA	8 cut(s)	114, 1006, 1145, 1358, 1896, 2154, 2373, 2427
TaqII	GACCGA	1 cut(s)	1073
TatI	WGTACW	3 cut(s)	466, 1504, 2209
TauI	GCSGC	2 cut(s)	241, 2097
TfiI	GAWTC	7 cut(s)	472, 517, 622, 1119, 1893, 2279, 2424
TscAI	CASTG	6 cut(s)	1318, 1432, 1804, 1863, 1996, 2355
TseFI	GTSAC	1 cut(s)	937
TseI	GCWGC	5 cut(s)	1286, 1994, 2033, 2057, 2114
Tsp45I	GTSAC	1 cut(s)	937
TspGWI	ACGGA	3 cut(s)	21, 919, 1738
TspMI	CCCGGG	1 cut(s)	2331
TspRI	CASTG	6 cut(s)	1318, 1432, 1804, 1863, 1996, 2355
Van91I	CCANNNNNTGG	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	763
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	5 cut(s)	37, 360, 887, 927, 2598
XapI	RAATTY	6 cut(s)	504, 1444, 1846, 2180, 2195, 2361
XceI	RCATGY	3 cut(s)	459, 883, 2109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2612
XhoI	CTCGAG	1 cut(s)	113
XmaI	CCCGGG	1 cut(s)	2331
XmaJI	CCTAGG	1 cut(s)	2027
XmiI	GTMKAC	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	2433
XspI	CTAG	5 cut(s)	935, 1178, 1454, 1880, 2028
ZrmI	AGTACT	2 cut(s)	468, 2211
Zsp2I	ATGCAT	2 cut(s)	906, 1653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.