Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005840

Physical Location & Seq

Genomic Coordinates Forward (+)

968082 .. 971839

Gene Structure 3758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000436

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGAAAGACGCCCAAAAAGTCCCATGCTTTCCGTTGGTCCAGGTTTTGGTACAGACCCCCCTCCTGCGCCCGCGAGGGATTTCATTCCTGACCTCAACGCGAGTCCCCGCCCTCGAGGCTCTCATAATAGAGATAGAGGAAACCCAACGAGAGCTAAAGGGGGCCCAGGAAGAATTGAAGTCCTGGGAGGGCGAGCGGAGGGCTTTCTTTGAGAAGGAAGCGCGTCTGTATCATCAGCGGCTGAGAAGCGCGGAGGGCGATGTGAGTGAAGGCCCCCGCTTCTCTTCTTTCTTTTTTTTAGTGAGGGCTTTCCGGACCTTCCCAACTACCTCTCCCGATGGTCATAAAAAAGCCCAAGATATAGGGACTCTATATTTCATCTTCGGTGCTATTGCTGGAGTGATGGGCACATGCTTCTCAGTACTGATTCGTATGGAATTAGCACGACCCGGCGATCAAATTCTTGGTGGGAATCATCAACTTTATAATGTTTTAATAACGGCTCATGCTTTTTTAATGATCTTTTTTATGGTTATGCCGGCGATGATAGGTGGATTTGGTAATTGGTTTGTTCCGATTCTGATAGGTGCACCTGACATGGCATTTCCACGATTAAATAATATTTCATTCTGGTTGTTGCCACCAAGTCTCTTGCTCCTATTAAGCTCAGCCTTAGTAGAAGTGGGTAGCGGGACTGGGTGGACGGTCTATCCGCCCTTAAGTGGTATTACCAGCCATTCTGGGGGAGCTGTTGATTTAGCAATTTTTAGTCTTCATCTATCTGGTATTTCATCCATTTTAGGTTCTATCAATTTTATAACAACTATCTTCAACATGCGTGGACCTGGAATGACTATGCATAGATTACCCCTATTTGTGTGGTCCGTTCTAGTGACAGCATTCCTACTTTTATTATCACTTCCGGTACTGGCAGGGGCAATTACCATGTTATTAACCGATCGAAACTTTAATACAACCTTTTTTGATCCCGCTGGGGGGGGAGACCCCATATTATACCAGCATCTCTTTTGGTTTTTCGGTCATCCAGAGGTGTATATTCTCATTCTGCCTGGATTCGGTATCATAAGTCATATCGTTTCGACTTTTTCGGGAAAACCGGTCTTCGGGTATCTAGGCATGGTTTATGCCATGATCAGTATAGGTGTTCTTGGATTTCTTGTTTGGGCTCATCATATGTTTACTGTGGGCTTAGACGTTGATACCCGTGCCTACTTTACCGCAGCTACCATGATCATAGCTGTCCCCACTGGAATAAAAATCTTTAGTTGGATCGCTACCATGTGGGGGGGTTCGATACAATACAAAACACCCATGTTATTTGCTGTAGGGTTCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCTGGCAAATTCTGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGCACATTTCCATTATGTACTTTCTATGGGAGCCGTTTTTGCTTTATTTGCAGGATTTTACTATTGGGTGGGAAAAATCTTTGGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGATCACTTTTTTCGGGGTTAATCTGACCTTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCAGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTTGTTGTTTCTTCGTGGTCGTAACAATCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAATAAAAATGATGGTTGCGCTTGGTGCGGATGTTTTACTTTTCATTCCCTTATCGTTATCACTGCTGCCTGCTCCGCAGGAACTGCTACAATATTTCCTAGGGCAGCCACTCACTATCCTGATGTGGCTGCGCTTTGTAAATCATCGTTTAGTCAACTGTCCTGCCGCACTAAAGCATGTTTTGCTGCAATCCCTTTTGGGGGCCAAATACCTCCGCGCGATATCGATTTGCTTCTTCGTTCTTCATTTGAATTCTTACATTTAGAATTTTACCAACCAGTACTGTCTCAACTACTTATGTCTCTATGCACCGAGGGGCCACAGTCTCGCTTCTATTTGGATGTTCTGGAATCGGATAGATTTTCAGTTCTATGGCAAAGACAACAGAGGGAATTAGCTCCCCGGGTAGAGGGAGAGGCACTGTTCCAAGAAATTTTCCGACTCGAAAAGCAAAATGAAGAGCGTGAAGCACAGAACGCTATTCTTCGCCAACGAATCGAAAATCTTCGGAACCTACAGCCCCCCTATTTTGAGTTTATGGTAACAGAAGAGCGGATCCAATACCAAGACGACTTCATTCATTTGAGGGGAGCAGAGCAGTCAAAGAATGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGTAAATCGCCGGTTGGGTTGGTCCAACCAAAAAAGACATGGGACGACTTTACCATTGCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015672 GO:0015980 GO:0015988 GO:0015990 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX1

Protein Analysis

869

Amino Acids

97.15

Weight (kDa)

6.77

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX1	PF00115	120 - 567	7.8e-162	Cytochrome C and Quinol oxidase polypeptide I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG01360
malus_domestica	MD13G1127000.v1.1
pyrus_communis	pycom461g00250
rosa_chinensis	RchiOBHm_Chr6g0256731 RchiOBHm_Chr6g0263801 RchiOBHm_MTg0498781 RchiOBHm_MTg0498791
rosa_laevigata	RLG00000000130 RLG00000000185 RLG00000000436 RLG00000000473 RLG00000000496 RLG00000002909
rosa_multiflora	Rmu_sc0000046.1_g000012 Rmu_sc0009290.1_g000004
rosa_roxburghii	Rroxscaffold_2G00118940 Rroxscaffold_2G00119310
rosa_rugosa	Rorug05G0209600
rosa_samantha	Rh1BG209200 Rh1BG209300 Rh1DG235800 Rh5CG352000 Rh6BG284800 Rh6CG178300 Rh6CG178400 Rh6DG170100 Rh6DG170200
rosa_wichuraiana	Rw4G000200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	486, 818
AbsI	CCTCGAGG	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccBSI	CCGCTC	2 cut(s)	196, 2446
AccII	CGCG	6 cut(s)	73, 100, 223, 251, 2110, 2112
AccIII	TCCGGA	1 cut(s)	312
AclWI	GGATC	5 cut(s)	980, 1298, 1574, 2443, 2456
AcsI	RAATTY	6 cut(s)	459, 1399, 1801, 2144, 2159, 2325
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	6 cut(s)	51, 423, 927, 1461, 1827, 2175
AflII	CTTAAG	1 cut(s)	718
AgeI	ACCGGT	1 cut(s)	1117
AgsI	TTSAA	6 cut(s)	178, 832, 1749, 1796, 1806, 2144
AjiI	CACGTC	1 cut(s)	1634
AjnI	CCWGG	6 cut(s)	39, 165, 182, 844, 1069, 1392
AluBI	AGCT	8 cut(s)	154, 666, 749, 1244, 1259, 1841, 1887, 2291
AluI	AGCT	8 cut(s)	154, 666, 749, 1244, 1259, 1841, 1887, 2291
Alw21I	GWGCWC	2 cut(s)	592, 1777
Alw26I	GTCTC	7 cut(s)	653, 996, 1871, 2184, 2199, 2223, 2503
Alw44I	GTGCAC	1 cut(s)	588
AlwI	GGATC	5 cut(s)	980, 1298, 1574, 2443, 2456
AlwNI	CAGNNNCTG	2 cut(s)	241, 1976
Ama87I	CYCGRG	2 cut(s)	113, 2295
Aor13HI	TCCGGA	1 cut(s)	312
AoxI	GGCC	4 cut(s)	162, 271, 2095, 2210
ApaI	GGGCCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	588
ApeKI	GCWGC	5 cut(s)	1241, 1958, 1997, 2021, 2078
ApoI	RAATTY	6 cut(s)	459, 1399, 1801, 2144, 2159, 2325
AsiGI	ACCGGT	1 cut(s)	1117
Asp700I	GAANNNNTTC	1 cut(s)	2397
AspA2I	CCTAGG	1 cut(s)	1991
AspLEI	GCGC	6 cut(s)	69, 223, 251, 1913, 2026, 2112
AsuC2I	CCSGG	3 cut(s)	450, 2296, 2297
AsuHPI	GGTGA	1 cut(s)	1357
AvaI	CYCGRG	2 cut(s)	113, 2295
AvaII	GGWCC	5 cut(s)	37, 315, 842, 882, 2562
AvrII	CCTAGG	1 cut(s)	1991
BaeGI	GKGCMC	3 cut(s)	166, 410, 592
BamHI	GGATCC	1 cut(s)	2448
BanII	GRGCYC	2 cut(s)	166, 1189
BbsI	GAAGAC	3 cut(s)	764, 1114, 2544
Bbv12I	GWGCWC	2 cut(s)	592, 1777
BbvI	GCAGC	5 cut(s)	1253, 1945, 2008, 2009, 2065
BccI	CCATC	5 cut(s)	332, 397, 1662, 1816, 1898
BceAI	ACGGC	2 cut(s)	516, 1460
BciT130I	CCWGG	6 cut(s)	41, 167, 184, 846, 1071, 1394
BclI	TGATCA	2 cut(s)	1152, 1251
BcnI	CCSGG	3 cut(s)	450, 2296, 2297
BcoDI	GTCTC	7 cut(s)	653, 996, 1871, 2184, 2199, 2223, 2503
BfaI	CTAG	4 cut(s)	890, 1133, 1409, 1992
BfmI	CTRYAG	2 cut(s)	1344, 2408
BfrI	CTTAAG	1 cut(s)	718
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	7 cut(s)	239, 1242, 1959, 1998, 2022, 2059, 2079
BlnI	CCTAGG	1 cut(s)	1991
BlpI	GCTNAGC	1 cut(s)	667
BlsI	GCNGC	7 cut(s)	240, 1243, 1960, 1999, 2023, 2060, 2080
BmcAI	AGTACT	2 cut(s)	423, 2175
Bme1390I	CCNGG	9 cut(s)	41, 167, 184, 450, 846, 1071, 1394, 2296, 2297
Bme18I	GGWCC	5 cut(s)	37, 315, 842, 882, 2562
BmeT110I	CYCGRG	2 cut(s)	113, 2295
BmgBI	CACGTC	1 cut(s)	1634
BmiI	GGNNCC	8 cut(s)	163, 164, 274, 1474, 2096, 2211, 2405, 2450
BmrFI	CCNGG	9 cut(s)	41, 167, 184, 450, 846, 1071, 1394, 2296, 2297
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	2 cut(s)	1030, 1645
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	3 cut(s)	764, 1114, 2544
BpmI	CTGGAG	2 cut(s)	417, 1821
Bpu10I	CCTNAGC	1 cut(s)	1679
Bpu1102I	GCTNAGC	1 cut(s)	667
BpuMI	CCSGG	3 cut(s)	450, 2296, 2297
Bsa29I	ATCGAT	1 cut(s)	2118
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	996
BsaJI	CCNNGG	7 cut(s)	165, 183, 1784, 1991, 2205, 2294, 2295
BsaWI	WCCGGW	3 cut(s)	312, 922, 1117
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bse118I	RCCGGY	3 cut(s)	538, 1117, 2550
Bse1I	ACTGG	6 cut(s)	700, 933, 1273, 1387, 1818, 2171
Bse3DI	GCAATG	2 cut(s)	1413, 2594
BseAI	TCCGGA	1 cut(s)	312
BseBI	CCWGG	6 cut(s)	41, 167, 184, 846, 1071, 1394
BseCI	ATCGAT	1 cut(s)	2118
BseDI	CCNNGG	7 cut(s)	165, 183, 1784, 1991, 2205, 2294, 2295
BseGI	GGATG	6 cut(s)	791, 1042, 1673, 1827, 1928, 2239
BseMI	GCAATG	2 cut(s)	1413, 2594
BseMII	CTCAG	3 cut(s)	233, 432, 681
BseNI	ACTGG	6 cut(s)	700, 933, 1273, 1387, 1818, 2171
BseSI	GKGCMC	3 cut(s)	166, 410, 592
BseXI	GCAGC	5 cut(s)	1253, 1945, 2008, 2009, 2065
BseYI	CCCAGC	1 cut(s)	992
Bsh1236I	CGCG	6 cut(s)	73, 100, 223, 251, 2110, 2112
Bsh1285I	CGRYCG	1 cut(s)	961
BshFI	GGCC	4 cut(s)	164, 273, 2097, 2212
BshTI	ACCGGT	1 cut(s)	1117
BshVI	ATCGAT	1 cut(s)	2118
BsiEI	CGRYCG	1 cut(s)	961
BsiHKAI	GWGCWC	2 cut(s)	592, 1777
BsiHKCI	CYCGRG	2 cut(s)	113, 2295
BsiSI	CCGG	7 cut(s)	313, 450, 539, 923, 1118, 2296, 2551
BslFI	GGGAC	6 cut(s)	5, 89, 379, 706, 1247, 2596
BsmAI	GTCTC	7 cut(s)	653, 996, 1871, 2184, 2199, 2223, 2503
BsmBI	CGTCTC	1 cut(s)	1871
BsmFI	GGGAC	6 cut(s)	5, 89, 379, 706, 1247, 2596
BsmI	GAATGC	3 cut(s)	899, 1638, 1678
BsnI	GGCC	4 cut(s)	164, 273, 2097, 2212
Bso31I	GGTCTC	1 cut(s)	996
BsoBI	CYCGRG	2 cut(s)	113, 2295
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	5 cut(s)	166, 410, 592, 1189, 1777
Bsp13I	TCCGGA	1 cut(s)	312
Bsp143I	GATC	9 cut(s)	454, 519, 958, 985, 1152, 1251, 1290, 1566, 2448
Bsp1720I	GCTNAGC	1 cut(s)	667
BspANI	GGCC	4 cut(s)	164, 273, 2097, 2212
BspCNI	CTCAG	3 cut(s)	234, 431, 680
BspDI	ATCGAT	1 cut(s)	2118
BspEI	TCCGGA	1 cut(s)	312
BspFNI	CGCG	6 cut(s)	73, 100, 223, 251, 2110, 2112
BspLI	GGNNCC	8 cut(s)	163, 164, 274, 1474, 2096, 2211, 2405, 2450
BspPI	GGATC	5 cut(s)	980, 1298, 1574, 2443, 2456
BspQI	GCTCTTC	2 cut(s)	2346, 2436
BspTI	CTTAAG	1 cut(s)	718
BspTNI	GGTCTC	1 cut(s)	996
BsrBI	CCGCTC	2 cut(s)	196, 2446
BsrDI	GCAATG	2 cut(s)	1413, 2594
BsrFI	RCCGGY	3 cut(s)	538, 1117, 2550
BsrI	ACTGG	6 cut(s)	700, 933, 1273, 1387, 1818, 2171
BssAI	RCCGGY	3 cut(s)	538, 1117, 2550
BssECI	CCNNGG	7 cut(s)	165, 183, 1784, 1991, 2205, 2294, 2295
BssMI	GATC	9 cut(s)	454, 519, 958, 985, 1152, 1251, 1290, 1566, 2448
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	2 cut(s)	1784, 1991
Bst2UI	CCWGG	6 cut(s)	41, 167, 184, 846, 1071, 1394
Bst4CI	ACNGT	6 cut(s)	706, 1204, 2052, 2178, 2217, 2316
Bst6I	CTCTTC	4 cut(s)	289, 2346, 2436, 2499
BstACI	GRCGYC	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	718
BstAPI	GCANNNNNTGC	2 cut(s)	1976, 2075
BstC8I	GCNNGC	4 cut(s)	71, 194, 540, 1963
BstDEI	CTNAG	7 cut(s)	242, 418, 667, 673, 1210, 1612, 1679
BstF5I	GGATG	6 cut(s)	791, 1042, 1673, 1827, 1928, 2239
BstFNI	CGCG	6 cut(s)	73, 100, 223, 251, 2110, 2112
BstHHI	GCGC	6 cut(s)	69, 223, 251, 1913, 2026, 2112
BstKTI	GATC	9 cut(s)	457, 522, 961, 988, 1155, 1254, 1293, 1569, 2451
BstMAI	GTCTC	7 cut(s)	653, 996, 1871, 2184, 2199, 2223, 2503
BstMBI	GATC	9 cut(s)	454, 519, 958, 985, 1152, 1251, 1290, 1566, 2448
BstMCI	CGRYCG	1 cut(s)	961
BstNI	CCWGG	6 cut(s)	41, 167, 184, 846, 1071, 1394
BstNSI	RCATGY	3 cut(s)	414, 838, 2073
BstSCI	CCNGG	9 cut(s)	39, 165, 182, 448, 844, 1069, 1392, 2294, 2295
BstSFI	CTRYAG	2 cut(s)	1344, 2408
BstSLI	GKGCMC	3 cut(s)	166, 410, 592
BstUI	CGCG	6 cut(s)	73, 100, 223, 251, 2110, 2112
BstV1I	GCAGC	5 cut(s)	1253, 1945, 2008, 2009, 2065
BstV2I	GAAGAC	3 cut(s)	764, 1114, 2544
BstX2I	RGATCY	1 cut(s)	2448
BstXI	CCANNNNNNTGG	1 cut(s)	1785
BstYI	RGATCY	1 cut(s)	2448
Bsu15I	ATCGAT	1 cut(s)	2118
BsuRI	GGCC	4 cut(s)	164, 273, 2097, 2212
BsuTUI	ATCGAT	1 cut(s)	2118
BtgZI	GCGATG	2 cut(s)	273, 557
BtrI	CACGTC	1 cut(s)	1634
BtsCI	GGATG	6 cut(s)	791, 1042, 1673, 1827, 1928, 2239
BtsI	GCAGTG	2 cut(s)	1759, 1953
BtsIMutI	CAGTG	6 cut(s)	1266, 1380, 1759, 1811, 1953, 2312
Cac8I	GCNNGC	4 cut(s)	71, 194, 540, 1963
CaiI	CAGNNNCTG	2 cut(s)	241, 1976
CfoI	GCGC	6 cut(s)	69, 223, 251, 1913, 2026, 2112
Cfr10I	RCCGGY	3 cut(s)	538, 1117, 2550
Cfr9I	CCCGGG	1 cut(s)	2295
ClaI	ATCGAT	1 cut(s)	2118
CseI	GACGC	2 cut(s)	17, 212
Csp6I	GTAC	6 cut(s)	50, 422, 926, 1460, 1826, 2174
CspAI	ACCGGT	1 cut(s)	1117
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviQI	GTAC	6 cut(s)	50, 422, 926, 1460, 1826, 2174
DdeI	CTNAG	7 cut(s)	242, 418, 667, 673, 1210, 1612, 1679
DpnI	GATC	9 cut(s)	456, 521, 960, 987, 1154, 1253, 1292, 1568, 2450
DpnII	GATC	9 cut(s)	454, 519, 958, 985, 1152, 1251, 1290, 1566, 2448
Eam1104I	CTCTTC	4 cut(s)	289, 2346, 2436, 2499
EarI	CTCTTC	4 cut(s)	289, 2346, 2436, 2499
EciI	GGCGGA	1 cut(s)	702
Eco130I	CCWWGG	2 cut(s)	1784, 1991
Eco24I	GRGCYC	2 cut(s)	166, 1189
Eco31I	GGTCTC	1 cut(s)	996
Eco32I	GATATC	1 cut(s)	2116
Eco47I	GGWCC	5 cut(s)	37, 315, 842, 882, 2562
Eco88I	CYCGRG	2 cut(s)	113, 2295
EcoO109I	RGGNCCY	2 cut(s)	162, 272
EcoRI	GAATTC	2 cut(s)	1801, 2144
EcoRII	CCWGG	6 cut(s)	39, 165, 182, 844, 1069, 1392
EcoRV	GATATC	1 cut(s)	2116
EcoT14I	CCWWGG	2 cut(s)	1784, 1991
EcoT22I	ATGCAT	2 cut(s)	861, 1608
EcoT38I	GRGCYC	2 cut(s)	166, 1189
ErhI	CCWWGG	2 cut(s)	1784, 1991
Esp3I	CGTCTC	1 cut(s)	1871
FalI	AAGNNNNNCTT	2 cut(s)	2496, 2528
FaqI	GGGAC	6 cut(s)	5, 89, 379, 706, 1247, 2596
FauI	CCCGC	5 cut(s)	78, 115, 284, 683, 997
FauNDI	CATATG	1 cut(s)	1194
FbaI	TGATCA	2 cut(s)	1152, 1251
Fnu4HI	GCNGC	7 cut(s)	239, 1242, 1959, 1998, 2022, 2059, 2079
FokI	GGATG	6 cut(s)	778, 1029, 1680, 1834, 1935, 2246
FriOI	GRGCYC	2 cut(s)	166, 1189
Fsp4HI	GCNGC	7 cut(s)	239, 1242, 1959, 1998, 2022, 2059, 2079
FspBI	CTAG	4 cut(s)	890, 1133, 1409, 1992
GlaI	GCGC	6 cut(s)	68, 222, 250, 1912, 2025, 2111
GluI	GCNGC	7 cut(s)	239, 1242, 1959, 1998, 2022, 2059, 2079
GsaI	CCCAGC	1 cut(s)	996
GsuI	CTGGAG	2 cut(s)	417, 1821
HaeIII	GGCC	4 cut(s)	164, 273, 2097, 2212
HapII	CCGG	7 cut(s)	313, 450, 539, 923, 1118, 2296, 2551
HgaI	GACGC	2 cut(s)	17, 212
HhaI	GCGC	6 cut(s)	69, 223, 251, 1913, 2026, 2112
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	6 cut(s)	67, 221, 249, 1911, 2024, 2110
HinP1I	GCGC	6 cut(s)	67, 221, 249, 1911, 2024, 2110
HincII	GTYRAC	1 cut(s)	2048
HindII	GTYRAC	1 cut(s)	2048
HpaII	CCGG	7 cut(s)	313, 450, 539, 923, 1118, 2296, 2551
HphI	GGTGA	1 cut(s)	1357
Hpy166II	GTNNAC	6 cut(s)	590, 702, 842, 1200, 1365, 2048
Hpy188I	TCNGA	7 cut(s)	576, 582, 1530, 1590, 2248, 2333, 2403
Hpy8I	GTNNAC	6 cut(s)	590, 702, 842, 1200, 1365, 2048
Hpy99I	CGWCG	1 cut(s)	1638
HpyAV	CCTTC	4 cut(s)	208, 263, 328, 1603
HpyCH4III	ACNGT	6 cut(s)	706, 1204, 2052, 2178, 2217, 2316
HpyCH4IV	ACGT	3 cut(s)	1215, 1633, 2541
HpyCH4V	TGCA	7 cut(s)	590, 859, 1445, 1493, 1606, 2081, 2202
HpyF3I	CTNAG	7 cut(s)	242, 418, 667, 673, 1210, 1612, 1679
HpySE526I	ACGT	3 cut(s)	1215, 1633, 2541
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	6 cut(s)	67, 221, 249, 1911, 2024, 2110
Kpn2I	TCCGGA	1 cut(s)	312
KroI	GCCGGC	1 cut(s)	538
KroNI	GCCGGC	1 cut(s)	540
Ksp22I	TGATCA	2 cut(s)	1152, 1251
Kzo9I	GATC	9 cut(s)	454, 519, 958, 985, 1152, 1251, 1290, 1566, 2448
LguI	GCTCTTC	2 cut(s)	2346, 2436
LmnI	GCTCC	7 cut(s)	660, 746, 1472, 1780, 1970, 2296, 2483
Lsp1109I	GCAGC	5 cut(s)	1253, 1945, 2008, 2009, 2065
LweI	GCATC	2 cut(s)	1030, 1645
MaeI	CTAG	4 cut(s)	890, 1133, 1409, 1992
MaeII	ACGT	3 cut(s)	1215, 1633, 2541
MaeIII	GTNAC	3 cut(s)	892, 1735, 2434
MalI	GATC	9 cut(s)	456, 521, 960, 987, 1154, 1253, 1292, 1568, 2450
MbiI	CCGCTC	2 cut(s)	196, 2446
MboI	GATC	9 cut(s)	454, 519, 958, 985, 1152, 1251, 1290, 1566, 2448
MflI	RGATCY	1 cut(s)	2448
MhlI	GDGCHC	5 cut(s)	166, 410, 592, 1189, 1777
MlyI	GAGTC	4 cut(s)	111, 361, 1371, 2328
MmeI	TCCRAC	4 cut(s)	1268, 1508, 2356, 2589
Mph1103I	ATGCAT	2 cut(s)	861, 1608
MroI	TCCGGA	1 cut(s)	312
MroNI	GCCGGC	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	2397
MseI	TTAA	9 cut(s)	494, 515, 614, 662, 719, 953, 969, 1584, 2605
MslI	CAYNNNNRTG	1 cut(s)	1816
MspA1I	CMGCKG	2 cut(s)	238, 992
MspCI	CTTAAG	1 cut(s)	718
MspI	CCGG	7 cut(s)	313, 450, 539, 923, 1118, 2296, 2551
MspR9I	CCNGG	9 cut(s)	41, 167, 184, 450, 846, 1071, 1394, 2296, 2297
Mva1269I	GAATGC	3 cut(s)	899, 1638, 1678
MvaI	CCWGG	6 cut(s)	41, 167, 184, 846, 1071, 1394
MvnI	CGCG	6 cut(s)	73, 100, 223, 251, 2110, 2112
NaeI	GCCGGC	1 cut(s)	540
NciI	CCSGG	3 cut(s)	450, 2296, 2297
NdeI	CATATG	1 cut(s)	1194
NdeII	GATC	9 cut(s)	454, 519, 958, 985, 1152, 1251, 1290, 1566, 2448
NgoMIV	GCCGGC	1 cut(s)	538
NlaIV	GGNNCC	8 cut(s)	163, 164, 274, 1474, 2096, 2211, 2405, 2450
NmuCI	GTSAC	1 cut(s)	892
NsiI	ATGCAT	2 cut(s)	861, 1608
NspI	RCATGY	3 cut(s)	414, 838, 2073
PaeR7I	CTCGAG	1 cut(s)	113
PciSI	GCTCTTC	2 cut(s)	2346, 2436
PctI	GAATGC	3 cut(s)	899, 1638, 1678
PdiI	GCCGGC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	2397
PfeI	GAWTC	6 cut(s)	427, 472, 577, 1074, 2243, 2388
PflMI	CCANNNNNTGG	1 cut(s)	46
PinAI	ACCGGT	1 cut(s)	1117
PkrI	GCNGC	7 cut(s)	240, 1243, 1960, 1999, 2023, 2060, 2080
Ple19I	CGATCG	1 cut(s)	961
PleI	GAGTC	4 cut(s)	110, 361, 1371, 2328
PpsI	GAGTC	4 cut(s)	110, 361, 1371, 2328
PsiI	TTATAA	2 cut(s)	486, 818
Psp6I	CCWGG	6 cut(s)	39, 165, 182, 844, 1069, 1392
PspFI	CCCAGC	1 cut(s)	992
PspGI	CCWGG	6 cut(s)	39, 165, 182, 844, 1069, 1392
PspN4I	GGNNCC	8 cut(s)	163, 164, 274, 1474, 2096, 2211, 2405, 2450
PspOMI	GGGCCC	1 cut(s)	162
PspXI	VCTCGAGB	1 cut(s)	113
PstNI	CAGNNNCTG	2 cut(s)	241, 1976
PsuI	RGATCY	1 cut(s)	2448
PvuI	CGATCG	1 cut(s)	961
RsaI	GTAC	6 cut(s)	51, 423, 927, 1461, 1827, 2175
RsaNI	GTAC	6 cut(s)	50, 422, 926, 1460, 1826, 2174
RseI	CAYNNNNRTG	1 cut(s)	1816
SapI	GCTCTTC	2 cut(s)	2346, 2436
SaqAI	TTAA	9 cut(s)	494, 515, 614, 662, 719, 953, 969, 1584, 2605
SatI	GCNGC	7 cut(s)	239, 1242, 1959, 1998, 2022, 2059, 2079
Sau3AI	GATC	9 cut(s)	454, 519, 958, 985, 1152, 1251, 1290, 1566, 2448
ScaI	AGTACT	2 cut(s)	423, 2175
SchI	GAGTC	4 cut(s)	111, 361, 1371, 2328
ScrFI	CCNGG	9 cut(s)	41, 167, 184, 450, 846, 1071, 1394, 2296, 2297
SduI	GDGCHC	5 cut(s)	166, 410, 592, 1189, 1777
SfaNI	GCATC	2 cut(s)	1030, 1645
SfcI	CTRYAG	2 cut(s)	1344, 2408
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	5 cut(s)	37, 315, 842, 882, 2562
SlaI	CTCGAG	1 cut(s)	113
SmaI	CCCGGG	1 cut(s)	2297
SmiMI	CAYNNNNRTG	1 cut(s)	1816
SmlI	CTYRAG	2 cut(s)	113, 718
SmoI	CTYRAG	2 cut(s)	113, 718
SspI	AATATT	2 cut(s)	622, 1986
SspMI	CTAG	4 cut(s)	890, 1133, 1409, 1992
StyD4I	CCNGG	9 cut(s)	39, 165, 182, 448, 844, 1069, 1392, 2294, 2295
StyI	CCWWGG	2 cut(s)	1784, 1991
TaaI	ACNGT	6 cut(s)	706, 1204, 2052, 2178, 2217, 2316
TaiI	ACGT	3 cut(s)	1218, 1636, 2544
TaqI	TCGA	7 cut(s)	114, 961, 1100, 1313, 2118, 2337, 2391
TaqII	GACCGA	1 cut(s)	1028
TatI	WGTACW	3 cut(s)	421, 1459, 2173
TauI	GCSGC	2 cut(s)	241, 2061
TfiI	GAWTC	6 cut(s)	427, 472, 577, 1074, 2243, 2388
Tru1I	TTAA	9 cut(s)	494, 515, 614, 662, 719, 953, 969, 1584, 2605
Tru9I	TTAA	9 cut(s)	494, 515, 614, 662, 719, 953, 969, 1584, 2605
TscAI	CASTG	6 cut(s)	1273, 1387, 1759, 1818, 1960, 2319
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	5 cut(s)	1241, 1958, 1997, 2021, 2078
Tsp45I	GTSAC	1 cut(s)	892
TspGWI	ACGGA	3 cut(s)	21, 874, 1693
TspMI	CCCGGG	1 cut(s)	2295
TspRI	CASTG	6 cut(s)	1273, 1387, 1759, 1818, 1960, 2319
Van91I	CCANNNNNTGG	1 cut(s)	46
Vha464I	CTTAAG	1 cut(s)	718
VneI	GTGCAC	1 cut(s)	588
VpaK11BI	GGWCC	5 cut(s)	37, 315, 842, 882, 2562
XapI	RAATTY	6 cut(s)	459, 1399, 1801, 2144, 2159, 2325
XceI	RCATGY	3 cut(s)	414, 838, 2073
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2576
XhoI	CTCGAG	1 cut(s)	113
XmaI	CCCGGG	1 cut(s)	2295
XmaJI	CCTAGG	1 cut(s)	1991
XmnI	GAANNNNTTC	1 cut(s)	2397
XspI	CTAG	4 cut(s)	890, 1133, 1409, 1992
ZrmI	AGTACT	2 cut(s)	423, 2175
Zsp2I	ATGCAT	2 cut(s)	861, 1608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.