Rmu_sc0000046.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000046.1
OG0005840
Physical Location & Seq
Reverse (-)
94163 .. 94450
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000046.1_g000012.1.cds

Sequence Viewer

Length: 288 bp
atgaggatggggatcaaaatattatccccgccccgtaatagatttcagaattcgaatattggggatccccatccccgtcacccgaatttctcccaattagggtcgaatacccgatgggtaccctacccgatgaggattattgtcatccctagagatgaggaaacatcacatttgggtcgcattatggaggatatcaactcttcgttagggctgttagcagggtcttccttgactcatgtatactgcgaagaaaacttggcagctcacaatttggttaagcttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.73

Weight (kDa)

9.1

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 118
AccB1I GGYRCC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 240
AciI CCGC 1 cut(s) 29
AclWI GGATC 3 cut(s) 20, 59, 72
AcsI RAATTY 2 cut(s) 49, 85
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 99
AluBI AGCT 2 cut(s) 263, 280
AluI AGCT 2 cut(s) 263, 280
AlwI GGATC 3 cut(s) 20, 59, 72
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 49, 85
Asp718I GGTACC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 53
BamHI GGATCC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 272
BccI CCATC 2 cut(s) 78, 108
BfaI CTAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 66, 120
BpiI GAAGAC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 53
BsaBI GATNNNNATC 2 cut(s) 11, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 99
Bse8I GATNNNNATC 2 cut(s) 11, 69
BseGI GGATG 3 cut(s) 12, 70, 144
BseJI GATNNNNATC 2 cut(s) 11, 69
BseLI CCNNNNNNNGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 99
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 2 cut(s) 12, 64
BspACI CCGC 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 66, 120
BspPI GGATC 3 cut(s) 20, 59, 72
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 118
BssMI GATC 2 cut(s) 12, 64
BssNAI GTATAC 1 cut(s) 241
Bst1107I GTATAC 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 205
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 282
BstF5I GGATG 3 cut(s) 12, 70, 144
BstKTI GATC 2 cut(s) 15, 67
BstMBI GATC 2 cut(s) 12, 64
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 241
BtsCI GGATG 3 cut(s) 12, 70, 144
Cac8I GCNNGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 119
CviAII CATG 1 cut(s) 236
CviJI RGCY 3 cut(s) 211, 263, 280
CviKI_1 RGCY 3 cut(s) 211, 263, 280
CviQI GTAC 1 cut(s) 119
DpnI GATC 2 cut(s) 14, 66
DpnII GATC 2 cut(s) 12, 64
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco32I GATATC 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 49
EcoRV GATATC 1 cut(s) 193
FaeI CATG 1 cut(s) 239
FaiI YATR 3 cut(s) 185, 237, 241
FatI CATG 1 cut(s) 235
FauI CCCGC 1 cut(s) 36
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 3 cut(s) 19, 57, 131
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 150
GluI GCNGC 1 cut(s) 261
Hin1II CATG 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 232
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 48
Hpy8I GTNNAC 1 cut(s) 241
Hsp92II CATG 1 cut(s) 239
KpnI GGTACC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 12, 64
LpnPI CCDG 1 cut(s) 204
Lsp1109I GCAGC 1 cut(s) 272
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 14, 66
MboI GATC 2 cut(s) 12, 64
MboII GAAGA 3 cut(s) 192, 216, 260
MflI RGATCY 1 cut(s) 64
MluCI AATT 4 cut(s) 49, 85, 95, 268
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 3 cut(s) 126, 151, 181
MseI TTAA 2 cut(s) 276, 286
NdeII GATC 2 cut(s) 12, 64
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 66, 120
NmuCI GTSAC 1 cut(s) 77
NspV TTCGAA 1 cut(s) 53
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 66, 120
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 276, 286
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 12, 64
SchI GAGTC 1 cut(s) 226
SetI ASST 2 cut(s) 265, 282
SfuI TTCGAA 1 cut(s) 53
Sse9I AATT 4 cut(s) 49, 85, 95, 268
SsiI CCGC 1 cut(s) 29
SspI AATATT 2 cut(s) 21, 58
SspMI CTAG 1 cut(s) 150
TaqI TCGA 2 cut(s) 53, 104
TasI AATT 4 cut(s) 49, 85, 95, 268
Tru1I TTAA 2 cut(s) 276, 286
Tru9I TTAA 2 cut(s) 276, 286
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 77
XapI RAATTY 2 cut(s) 49, 85
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.