RchiOBHm_Chr6g0263801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005840
Physical Location & Seq
Forward (+)
18661169 .. 18664780
3612 bp
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UTR
Exon/CDS
Intron
PRQ23659

Sequence Viewer

Length: 363 bp
ATGTCTGTCTCTCTCTGTCTCTGTCTCTCTCTCTCATTCCTACTCTCTTTCCACGAACACCACTCCCTCTCCGCGCTTCTTCGATTTCATGAAAAAGGAGAGTTGCCAAGTACAAGAACAAGGCCGAGTTCAGGTTCCACTCCGCTCTCGCCTACGCCCCTCCGCCTTCTTCGATGCAGATTTGATTCAGGTTTGGGTTCAATTAAGGAGTTGGCTGGCTTAAGTTCCTCCTCAGTGCAGCCCCTGGTTGTGTCTTCGCCGGAGGAAACCCGAATGTCGTTGTTGTCGGATAATAGACTTGCAAAAAGTTTAGAAAACCGTCAGAGTGCTAGAAGTGTAACAGAGCCATGGCATCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.2

Weight (kDa)

9.41

Isoelectric Point (pI)

65.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 145
AccII CGCG 1 cut(s) 74
AciI CCGC 3 cut(s) 72, 143, 163
AfaI GTAC 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 131
AflII CTTAAG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 201
AjnI CCWGG 1 cut(s) 243
Alw26I GTCTC 3 cut(s) 13, 23, 29
AlwNI CAGNNNCTG 1 cut(s) 244
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 13, 23, 29
BfaI CTAG 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 220
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 243, 347
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 243, 347
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 74
BshFI GGCC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 3 cut(s) 13, 23, 29
BsnI GGCC 1 cut(s) 124
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 3 cut(s) 72, 143, 163
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 245
BspFNI CGCG 1 cut(s) 74
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 136
BspTI CTTAAG 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 145
BssECI CCNNGG 2 cut(s) 243, 347
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 320
BstAFI CTTAAG 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 232
BstDSI CCRYGG 1 cut(s) 347
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 76
BstMAI GTCTC 3 cut(s) 13, 23, 29
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstUI CGCG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 240
Cac8I GCNNGC 1 cut(s) 217
CaiI CAGNNNCTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 111
CviAII CATG 2 cut(s) 89, 348
CviJI RGCY 5 cut(s) 124, 215, 219, 241, 346
CviKI_1 RGCY 5 cut(s) 124, 215, 219, 241, 346
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 1 cut(s) 232
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 2 cut(s) 92, 351
FaiI YATR 2 cut(s) 90, 349
FatI CATG 2 cut(s) 88, 347
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 124
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 92, 351
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 289, 324
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 177, 238, 302
HpyF3I CTNAG 1 cut(s) 232
Hsp92II CATG 2 cut(s) 92, 351
HspAI GCGC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 117, 174, 201, 230, 257, 273
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 337
MbiI CCGCTC 1 cut(s) 145
MboII GAAGA 3 cut(s) 71, 161, 246
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 5 cut(s) 77, 170, 238, 241, 256
MseI TTAA 2 cut(s) 204, 221
MspCI CTTAAG 1 cut(s) 220
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 347
NlaIII CATG 2 cut(s) 92, 351
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 150
PagI TCATGA 1 cut(s) 88
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 204, 221
SatI GCNGC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 245
SetI ASST 2 cut(s) 136, 193
SfaNI GCATC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
Sse9I AATT 1 cut(s) 201
SsiI CCGC 3 cut(s) 72, 143, 163
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 2 cut(s) 82, 172
TasI AATT 1 cut(s) 201
TatI WGTACW 1 cut(s) 110
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 2 cut(s) 204, 221
Tru9I TTAA 2 cut(s) 204, 221
TscAI CASTG 1 cut(s) 240
TseI GCWGC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 77, 105
TspRI CASTG 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 220
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.