Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005840

Physical Location & Seq

Genomic Coordinates Reverse (-)

172997 .. 173563

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTTATTTGCTGTAGGGTTCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCTGGCAAATTCTGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGCACATTTCCATTATGTACTTTCTATGGGAGCCGTTTTTGCTTTATTTGCAGGATTTTACTATTGGGTGGGAAAAATCTTTGGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGATCACTTTTTTCGGGGTTAATCTGACCTTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCAGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTTGTTGTTTCTTCGTGGTCGTAACAATCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015672 GO:0015980 GO:0015988 GO:0015990 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX1

Protein Analysis

188

Amino Acids

20.92

Weight (kDa)

7.0

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX1	PF00115	1 - 123	1.1e-45	Cytochrome C and Quinol oxidase polypeptide I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG01360
malus_domestica	MD13G1127000.v1.1
pyrus_communis	pycom461g00250
rosa_chinensis	RchiOBHm_Chr6g0256731 RchiOBHm_Chr6g0263801 RchiOBHm_MTg0498781 RchiOBHm_MTg0498791
rosa_laevigata	RLG00000000130 RLG00000000185 RLG00000000436 RLG00000000473 RLG00000000496 RLG00000002909
rosa_multiflora	Rmu_sc0000046.1_g000012 Rmu_sc0009290.1_g000004
rosa_roxburghii	Rroxscaffold_2G00118940 Rroxscaffold_2G00119310
rosa_rugosa	Rorug05G0209600
rosa_samantha	Rh1BG209200 Rh1BG209300 Rh1DG235800 Rh5CG352000 Rh6BG284800 Rh6CG178300 Rh6CG178400 Rh6DG170100 Rh6DG170200
rosa_wichuraiana	Rw4G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	67, 469
AfaI	GTAC	2 cut(s)	129, 495
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	3 cut(s)	417, 464, 474
AjiI	CACGTC	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	2 cut(s)	509, 555
AluI	AGCT	2 cut(s)	509, 555
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	242
ApoI	RAATTY	2 cut(s)	67, 469
AsuHPI	GGTGA	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	445
BccI	CCATC	2 cut(s)	330, 484
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	302
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	2 cut(s)	55, 486
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	452
BseGI	GGATG	2 cut(s)	341, 495
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	2 cut(s)	55, 486
BsiHKAI	GWGCWC	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	539
BsmBI	CGTCTC	1 cut(s)	539
BsmI	GAATGC	2 cut(s)	306, 346
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	55, 486
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	280, 347
BstF5I	GGATG	2 cut(s)	341, 495
BstKTI	GATC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 158, 357
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	453
BtrI	CACGTC	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	341, 495
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	3 cut(s)	48, 427, 479
Csp6I	GTAC	2 cut(s)	128, 494
CviAII	CATG	2 cut(s)	92, 271
CviJI	RGCY	7 cut(s)	76, 143, 286, 360, 458, 509, 555
CviKI_1	RGCY	7 cut(s)	76, 143, 286, 360, 458, 509, 555
CviQI	GTAC	2 cut(s)	128, 494
DdeI	CTNAG	2 cut(s)	280, 347
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	2 cut(s)	95, 274
FatI	CATG	2 cut(s)	91, 270
FokI	GGATG	2 cut(s)	348, 502
FspBI	CTAG	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	489
Hin1II	CATG	2 cut(s)	95, 274
HinfI	GANTC	1 cut(s)	45
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	198, 258
Hpy188III	TCNNGA	2 cut(s)	311, 320
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	113, 161, 274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 158, 357
HpyF3I	CTNAG	2 cut(s)	280, 347
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	2 cut(s)	95, 274
Kzo9I	GATC	1 cut(s)	234
LmnI	GCTCC	2 cut(s)	140, 448
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MboII	GAAGA	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	2 cut(s)	67, 469
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	35, 513
Mph1103I	ATGCAT	1 cut(s)	276
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	484
MspR9I	CCNGG	1 cut(s)	62
Mva1269I	GAATGC	2 cut(s)	306, 346
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	149, 158, 357
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	2 cut(s)	95, 274
NlaIV	GGNNCC	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	276
PctI	GAATGC	2 cut(s)	306, 346
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	142
RsaI	GTAC	2 cut(s)	129, 495
RsaNI	GTAC	2 cut(s)	128, 494
RseI	CAYNNNNRTG	1 cut(s)	484
SaqAI	TTAA	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	5 cut(s)	220, 263, 304, 511, 557
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	484
Sse9I	AATT	2 cut(s)	67, 469
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	452
TaiI	ACGT	1 cut(s)	304
TasI	AATT	2 cut(s)	67, 469
TatI	WGTACW	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	3 cut(s)	55, 427, 486
TspDTI	ATGAA	2 cut(s)	10, 503
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	3 cut(s)	55, 427, 486
XapI	RAATTY	2 cut(s)	67, 469
XspI	CTAG	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.