Rh1BG209200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005840
Physical Location & Seq
Forward (+)
32777790 .. 32788481
10692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG209200.1

Sequence Viewer

Length: 336 bp
ATGGAAGCTATTGTTGGGTATTCTCCAGATAAAAGTCAGAATATGGTTCTTATGGGCGGTTTAAGAAAACATGAGTCTGGGCCGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCCCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGTGGATTCCTCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAGCCATTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCATCCGCCACTGGAAACACCACTTCCCGTCCGACTTGCATGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.72

Weight (kDa)

9.1

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 258
AccII CGCG 2 cut(s) 178, 279
AciI CCGC 2 cut(s) 57, 294
AfiI CCNNNNNNNGG 5 cut(s) 189, 190, 262, 263, 267
AflIII ACRYGT 1 cut(s) 277
AjuI GAANNNNNNNTTGG 3 cut(s) 29, 254, 286
AluBI AGCT 5 cut(s) 8, 125, 148, 167, 246
AluI AGCT 5 cut(s) 8, 125, 148, 167, 246
AlwNI CAGNNNCTG 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 80, 119
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 184
BbvCI CCTCAGC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 298
BceAI ACGGC 1 cut(s) 67
BclI TGATCA 2 cut(s) 106, 130
BfaI CTAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 258
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 80, 119
BmrI ACTGGG 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 9
Bpu10I CCTNAGC 1 cut(s) 214
BsaJI CCNNGG 3 cut(s) 139, 188, 261
Bsc4I CCNNNNNNNGG 5 cut(s) 189, 190, 262, 263, 267
Bse1I ACTGG 2 cut(s) 96, 304
BseDI CCNNGG 3 cut(s) 139, 188, 261
BseGI GGATG 2 cut(s) 109, 290
BseLI CCNNNNNNNGG 5 cut(s) 189, 190, 262, 263, 267
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 96, 304
BseRI GAGGAG 2 cut(s) 177, 202
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 2 cut(s) 178, 279
BshFI GGCC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 5 cut(s) 189, 190, 262, 263, 267
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 2 cut(s) 106, 130
BspACI CCGC 2 cut(s) 57, 294
BspANI GGCC 1 cut(s) 82
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 2 cut(s) 178, 279
BspMI ACCTGC 1 cut(s) 258
BsrI ACTGG 2 cut(s) 96, 304
BssECI CCNNGG 3 cut(s) 139, 188, 261
BssMI GATC 2 cut(s) 106, 130
BssT1I CCWWGG 2 cut(s) 139, 261
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 109, 290
BstFNI CGCG 2 cut(s) 178, 279
BstKTI GATC 2 cut(s) 109, 133
BstMBI GATC 2 cut(s) 106, 130
BstNSI RCATGY 1 cut(s) 331
BstUI CGCG 2 cut(s) 178, 279
BstV1I GCAGC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 109, 290
BtsIMutI CAGTG 2 cut(s) 103, 297
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 80, 119
CseI GACGC 1 cut(s) 184
CviAII CATG 2 cut(s) 71, 328
DdeI CTNAG 1 cut(s) 214
DpnI GATC 2 cut(s) 108, 132
DpnII GATC 2 cut(s) 106, 130
EciI GGCGGA 1 cut(s) 283
Eco130I CCWWGG 2 cut(s) 139, 261
Eco24I GRGCYC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 189
EcoT14I CCWWGG 2 cut(s) 139, 261
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 2 cut(s) 139, 261
FaeI CATG 2 cut(s) 74, 331
FaiI YATR 4 cut(s) 44, 53, 72, 329
FaqI GGGAC 1 cut(s) 78
FatI CATG 2 cut(s) 70, 327
FbaI TGATCA 2 cut(s) 106, 130
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 96, 277
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 9
HaeIII GGCC 1 cut(s) 82
HgaI GACGC 1 cut(s) 184
Hin1II CATG 2 cut(s) 74, 331
HinfI GANTC 2 cut(s) 74, 197
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 4 cut(s) 39, 119, 174, 321
Hpy188III TCNNGA 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 327
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 2 cut(s) 74, 331
Ksp22I TGATCA 2 cut(s) 106, 130
Kzo9I GATC 2 cut(s) 106, 130
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 7 cut(s) 39, 63, 109, 135, 253, 256, 285
Lsp1109I GCAGC 1 cut(s) 245
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 108, 132
MboI GATC 2 cut(s) 106, 130
MhlI GDGCHC 1 cut(s) 184
MluI ACGCGT 1 cut(s) 277
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 6 cut(s) 123, 195, 198, 211, 223, 267
MseI TTAA 2 cut(s) 62, 334
MspA1I CMGCKG 1 cut(s) 246
MvnI CGCG 2 cut(s) 178, 279
NdeII GATC 2 cut(s) 106, 130
NlaIII CATG 2 cut(s) 74, 331
NspI RCATGY 1 cut(s) 331
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PspPI GGNCC 2 cut(s) 80, 119
PstNI CAGNNNCTG 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 62, 334
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 106, 130
Sau96I GGNCC 2 cut(s) 80, 119
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 184
SetI ASST 6 cut(s) 10, 127, 150, 169, 248, 272
SinI GGWCC 1 cut(s) 119
SsiI CCGC 2 cut(s) 57, 294
SspMI CTAG 1 cut(s) 164
StyI CCWWGG 2 cut(s) 139, 261
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 2 cut(s) 62, 334
Tru9I TTAA 2 cut(s) 62, 334
TscAI CASTG 2 cut(s) 103, 304
TseI GCWGC 1 cut(s) 233
TspRI CASTG 2 cut(s) 103, 304
VpaK11BI GGWCC 1 cut(s) 119
XceI RCATGY 1 cut(s) 331
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.