Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005840

Physical Location & Seq

Genomic Coordinates Reverse (-)

51199545 .. 51201718

Gene Structure 2174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTTTATGCCATGATCAGTATAGGTGTTCTTGGATTTCTTGTTTGGGCTCATCATATGTTTACTGTGGGCTTAGACGTTGATACCCGTGCCTACTTTACCGCAGCTACCATGATCATAGCTGTCCCCACTGGAATAAAAATCTTTAGTTGGATCGCTACCATGTGGGGGGGTTCGATACAATACAAAACACCCATGTTATTTGCTGTAGGGTTCATCTTTTTGTTCACCATAGGAGGACTCACTGGAATAGTCCTGGCAAATTCTGGGCTAGACATTGCTCTACATGATACTTATTATGTGGTTGCACATTTCCATTATGTACTTTCTATGGGAGCCGTTTTTGCTTTATTTGCAGGATTTTACTATTGGGTGGGAAAAATCTTTGGTCGGACATACCCTGAAACTTTAGGTCAAATCCATTTTTGGATCACTTTTTTCGGGGTTAATCTGACCTTCTTTCCCATGCATTTCTTAGGGCTTTCGGGTATGCCACGTCGCATTCCAGATTATCCAGATGCTTACGCTGGATGGAATGCCCTTAGCAGTTTTGGCTCTTATATATCCGTAGTTGGGATTTGTTGTTTCTTCGTGGTCGTAACAATCACTTCAAGCAGTGGAAATAACAAAAGATGTGCTCCAAGTCCTTGGGCTGTTGAACAGAATTCAACCACACTGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCTGCTATCAAGGAGACGAAAAGCTATGTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006123 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015672 GO:0015980 GO:0015988 GO:0015990 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019646 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034220 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX1

Protein Analysis

253

Amino Acids

28.1

Weight (kDa)

7.76

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX1	PF00115	1 - 188	1.9e-74	Cytochrome C and Quinol oxidase polypeptide I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG01360
malus_domestica	MD13G1127000.v1.1
pyrus_communis	pycom461g00250
rosa_chinensis	RchiOBHm_Chr6g0256731 RchiOBHm_Chr6g0263801 RchiOBHm_MTg0498781 RchiOBHm_MTg0498791
rosa_laevigata	RLG00000000130 RLG00000000185 RLG00000000436 RLG00000000473 RLG00000000496 RLG00000002909
rosa_multiflora	Rmu_sc0000046.1_g000012 Rmu_sc0009290.1_g000004
rosa_roxburghii	Rroxscaffold_2G00118940 Rroxscaffold_2G00119310
rosa_rugosa	Rorug05G0209600
rosa_samantha	Rh1BG209200 Rh1BG209300 Rh1DG235800 Rh5CG352000 Rh6BG284800 Rh6CG178300 Rh6CG178400 Rh6DG170100 Rh6DG170200
rosa_wichuraiana	Rw4G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	2 cut(s)	161, 437
AcsI	RAATTY	2 cut(s)	262, 664
AfaI	GTAC	2 cut(s)	324, 690
AfiI	CCNNNNNNNGG	2 cut(s)	168, 573
AgsI	TTSAA	3 cut(s)	612, 659, 669
AjiI	CACGTC	1 cut(s)	497
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	4 cut(s)	107, 122, 704, 750
AluI	AGCT	4 cut(s)	107, 122, 704, 750
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	2 cut(s)	161, 437
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	262, 664
AsuHPI	GGTGA	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	2 cut(s)	525, 679
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	2 cut(s)	15, 114
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	647
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 573
Bse1I	ACTGG	3 cut(s)	136, 250, 681
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	647
BseGI	GGATG	2 cut(s)	536, 690
BseLI	CCNNNNNNNGG	2 cut(s)	168, 573
BseMI	GCAATG	1 cut(s)	276
BseNI	ACTGG	3 cut(s)	136, 250, 681
BseXI	GCAGC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	168, 573
BsmAI	GTCTC	1 cut(s)	734
BsmBI	CGTCTC	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	110
BsmI	GAATGC	2 cut(s)	501, 541
Bsp1286I	GDGCHC	2 cut(s)	52, 640
Bsp143I	GATC	4 cut(s)	15, 114, 153, 429
BspACI	CCGC	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	161, 437
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	136, 250, 681
BssECI	CCNNGG	1 cut(s)	647
BssMI	GATC	4 cut(s)	15, 114, 153, 429
BssT1I	CCWWGG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	67
BstDEI	CTNAG	3 cut(s)	73, 475, 542
BstF5I	GGATG	2 cut(s)	536, 690
BstKTI	GATC	4 cut(s)	18, 117, 156, 432
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	4 cut(s)	15, 114, 153, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 353, 552
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	648
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	536, 690
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	4 cut(s)	129, 243, 622, 674
Csp6I	GTAC	2 cut(s)	323, 689
CviAII	CATG	6 cut(s)	13, 112, 163, 196, 287, 466
CviQI	GTAC	2 cut(s)	323, 689
DdeI	CTNAG	3 cut(s)	73, 475, 542
DpnI	GATC	4 cut(s)	17, 116, 155, 431
DpnII	GATC	4 cut(s)	15, 114, 153, 429
Eco130I	CCWWGG	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	647
EcoT22I	ATGCAT	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	647
Esp3I	CGTCTC	1 cut(s)	734
FaeI	CATG	6 cut(s)	16, 115, 166, 199, 290, 469
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	6 cut(s)	12, 111, 162, 195, 286, 465
FauNDI	CATATG	1 cut(s)	57
FbaI	TGATCA	2 cut(s)	15, 114
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	543, 697
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	684
Hin1II	CATG	6 cut(s)	16, 115, 166, 199, 290, 469
HinfI	GANTC	1 cut(s)	240
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	63, 228
Hpy188I	TCNGA	2 cut(s)	393, 453
Hpy188III	TCNNGA	2 cut(s)	506, 515
Hpy8I	GTNNAC	2 cut(s)	63, 228
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	78, 496
HpyCH4V	TGCA	3 cut(s)	308, 356, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 353, 552
HpyF3I	CTNAG	3 cut(s)	73, 475, 542
HpySE526I	ACGT	2 cut(s)	78, 496
Hsp92II	CATG	6 cut(s)	16, 115, 166, 199, 290, 469
Ksp22I	TGATCA	2 cut(s)	15, 114
Kzo9I	GATC	4 cut(s)	15, 114, 153, 429
LmnI	GCTCC	2 cut(s)	335, 643
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	2 cut(s)	78, 496
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	4 cut(s)	17, 116, 155, 431
MboI	GATC	4 cut(s)	15, 114, 153, 429
MboII	GAAGA	1 cut(s)	580
MhlI	GDGCHC	2 cut(s)	52, 640
MluCI	AATT	2 cut(s)	262, 664
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	2 cut(s)	131, 371
MnlI	CCTC	2 cut(s)	230, 708
Mph1103I	ATGCAT	1 cut(s)	471
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	679
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	2 cut(s)	501, 541
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	3 cut(s)	344, 353, 552
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	4 cut(s)	15, 114, 153, 429
NlaIII	CATG	6 cut(s)	16, 115, 166, 199, 290, 469
NlaIV	GGNNCC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	471
PctI	GAATGC	2 cut(s)	501, 541
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	337
RsaI	GTAC	2 cut(s)	324, 690
RsaNI	GTAC	2 cut(s)	323, 689
RseI	CAYNNNNRTG	1 cut(s)	679
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	4 cut(s)	15, 114, 153, 429
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	52, 640
SetI	ASST	9 cut(s)	28, 81, 109, 124, 415, 458, 499, 706, 752
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	679
Sse9I	AATT	2 cut(s)	262, 664
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	81, 499
TaqI	TCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	262, 664
TatI	WGTACW	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	4 cut(s)	136, 250, 622, 681
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	205, 698
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	4 cut(s)	136, 250, 622, 681
XapI	RAATTY	2 cut(s)	262, 664
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.