Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005840

Physical Location & Seq

Genomic Coordinates Reverse (-)

26534759 .. 26535650

Gene Structure 892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG170100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGATGGTTGCGCTTGGTGCGGATGTTTTACTTTTCATTCCCTTATCGTTATCACTGCTGCCTGCTCCGCAGGAACTGCTACAATATTTCCTAGGGCAGCCACTCACTATCCTGATGTGGCTGCGCTTTGTAAATCATCGTTTAGTCAACTGTCCTGCCGCACTAAAGCATGTTTTGCTGCAATCCCTTTTCGAAATGGAATCTTGCTCGTGCTTAAAAGATTTTATAATTGAACAATACCAAGACGACTTCATTCATTTGAGGGGAGCAGAGCAGTCAAAGAATGAAGAGAGACTTGTTCTTGCTCTCCCAATTCAGGAAGACGTAAATCGCCGGTTGGGTTGGTCCAACCAAAAAAGACATGGGACGACTTTACCATTGCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.87

Weight (kDa)

6.04

Isoelectric Point (pI)

64.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005840)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG01360
malus_domestica	MD13G1127000.v1.1
pyrus_communis	pycom461g00250
rosa_chinensis	RchiOBHm_Chr6g0256731 RchiOBHm_Chr6g0263801 RchiOBHm_MTg0498781 RchiOBHm_MTg0498791
rosa_laevigata	RLG00000000130 RLG00000000185 RLG00000000436 RLG00000000473 RLG00000000496 RLG00000002909
rosa_multiflora	Rmu_sc0000046.1_g000012 Rmu_sc0009290.1_g000004
rosa_roxburghii	Rroxscaffold_2G00118940 Rroxscaffold_2G00119310
rosa_rugosa	Rorug05G0209600
rosa_samantha	Rh1BG209200 Rh1BG209300 Rh1DG235800 Rh5CG352000 Rh6BG284800 Rh6CG178300 Rh6CG178400 Rh6DG170100 Rh6DG170200
rosa_wichuraiana	Rw4G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AciI	CCGC	3 cut(s)	20, 68, 159
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	76
ApeKI	GCWGC	4 cut(s)	58, 97, 121, 178
AspA2I	CCTAGG	1 cut(s)	91
AspLEI	GCGC	2 cut(s)	13, 126
AspS9I	GGNCC	1 cut(s)	345
AsuII	TTCGAA	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	345
AvrII	CCTAGG	1 cut(s)	91
BauI	CACGAG	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	4 cut(s)	45, 108, 109, 165
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	5 cut(s)	59, 98, 122, 159, 179
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	5 cut(s)	60, 99, 123, 160, 180
Bme18I	GGWCC	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	333
Bse3DI	GCAATG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	377
BseXI	GCAGC	4 cut(s)	45, 108, 109, 165
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	379
Bsp119I	TTCGAA	1 cut(s)	192
BspACI	CCGC	3 cut(s)	20, 68, 159
BspT104I	TTCGAA	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	91
Bst2BI	CACGAG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	282
BstAPI	GCANNNNNTGC	2 cut(s)	76, 175
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	13, 126
BstMAI	GTCTC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 67, 76, 175
BstNSI	RCATGY	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	45, 108, 109, 165
BstV2I	GAAGAC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	76
CfoI	GCGC	2 cut(s)	13, 126
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	345
CviAII	CATG	2 cut(s)	170, 362
CviJI	RGCY	2 cut(s)	100, 121
CviKI_1	RGCY	2 cut(s)	100, 121
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	173, 365
FaiI	YATR	3 cut(s)	171, 227, 363
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	2 cut(s)	169, 361
Fnu4HI	GCNGC	5 cut(s)	59, 98, 122, 159, 179
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	59, 98, 122, 159, 179
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	2 cut(s)	12, 125
GluI	GCNGC	5 cut(s)	59, 98, 122, 159, 179
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	2 cut(s)	13, 126
Hin1II	CATG	2 cut(s)	173, 365
Hin6I	GCGC	2 cut(s)	11, 124
HinP1I	GCGC	2 cut(s)	11, 124
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	2 cut(s)	112, 317
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 67, 76, 175
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	173, 365
HspAI	GCGC	2 cut(s)	11, 124
LmnI	GCTCC	2 cut(s)	70, 266
LpnPI	CCDG	6 cut(s)	56, 75, 125, 168, 302, 347
Lsp1109I	GCAGC	4 cut(s)	45, 108, 109, 165
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	324
MboII	GAAGA	2 cut(s)	299, 332
MluCI	AATT	2 cut(s)	228, 312
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	215, 388
MspI	CCGG	1 cut(s)	334
MwoI	GCNNNNNNNGC	4 cut(s)	17, 67, 76, 175
NlaIII	CATG	2 cut(s)	173, 365
NspI	RCATGY	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	5 cut(s)	60, 99, 123, 160, 180
PsiI	TTATAA	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	215, 388
SatI	GCNGC	5 cut(s)	59, 98, 122, 159, 179
Sau96I	GGNCC	1 cut(s)	345
SetI	ASST	1 cut(s)	327
SfuI	TTCGAA	1 cut(s)	192
SinI	GGWCC	1 cut(s)	345
Sse9I	AATT	2 cut(s)	228, 312
SsiI	CCGC	3 cut(s)	20, 68, 159
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	192
TasI	AATT	2 cut(s)	228, 312
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	215, 388
Tru9I	TTAA	2 cut(s)	215, 388
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	4 cut(s)	58, 97, 121, 178
TspDTI	ATGAA	4 cut(s)	25, 241, 245, 300
TspRI	CASTG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	345
XceI	RCATGY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	359
XmaJI	CCTAGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.