pycom49g00110
MYB Family

MYB-CC type transfactor, LHEQLE motif

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_49
Physical Location & Seq
Forward (+)
156316 .. 158380
2065 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1434 bp
ATGATGTACCATCATCAGCAGCAGCACCAACACCAACACCAACACCAAGGAAAGAAGATCATCCACTCTGCTTCTTCAAGCAGAATATCGATGCCTAACATCCCTTCTGAAAGGCATTTGTTTCTACAGCAAGGTGACCAAAATAGCCCTGCAGGAGATTCAGGCCTTGTCCTCTCAACCGATGCCAAGCCTAGACTCAAATGGACCCCCGATCTCCACGAGCGATTTATCGAGGCAGTTAACCAGCTTGGAGGAGCAGATAAGGCTACTCCAAAAACAGTTATGAAACTTATGGGGATTCCCGGCCTGACATTATACCACTTAAAGAGTCATCTTCAGAAGTACAGGCTTAGCAAGAATCTGCATGGAGGGCACGTTACTAGTAGCCTCACCAAAATTGGTCCAGTTCCAGTTTCAGTGGCAGGAGAAAGATTAATATCTGAAGCAAATGGAAGTCAGATGAGCACTACGAGCACTGGCATTGCACCCCAATCAAACAAAGGCTTACATATAACTGAAACACTGGAGATGCAAATTGAAGTCCAGAGAAGGCTACATGAGCAACTTGAGGTAAGGGCGTGCTCTTGGCACTCAGTAGAGCAAAAACTCCTTCCCATTATAGCAGCGTTATTCTTACAATTTGTTCTGACCGAAAACCAGGTTCAGCGGCACTTGCAACTTCGTATAGAGTCTCAAGGAAAATACCTGCAGTCTGTGCTGGAGAAAGCCCAGGAGACGCTAGGACGACAAAACTTAGGTACAGTAGGACTTGAAGCTGCCCAAGTTCAACTCTCTGAGCTGGTGTCCAAAGTATCCACCCAATGCTTGAACTCTTCCTTCACAGAGCTCAAAGAATTACAGGGATTGTGCCCTCAGCAAACGCAAACGAACCAGCAGCCCACCGATTGCTCAATGGACAGCTGCCTAACTTTTTGCGAAGGATCGAAAAAGGACCAAGATCAGATACACAGCAGTGGAGTGCCTCTAAGACCAAATTACAATGGCAGGGTGACAGCAGTCCTGGAACAAAAAGATACAGAACGAGCGCAGCCGCCAATGCTCCAAAACACTAGTCAACTTAATTGGTGTGAAGATATGAAGGAGAATAACATGTTTATTTCCTCCATAAGTAAAGATGCAGAAAAAAGAATGTTCCCTGCTGCAGAAACAAGGTCTAGTGACTTATCCATGAGCATTGGACTACAAGGAGAAAGATGGAATCTCGATAGCAAGGGAAGAGACTCAGATGGCAGCTTTTTAGAACGAACAAACAGCAGCAGGGCCGATTCAGCTAAAGTCAAGGGTGCGAAAGTTTCTCAAGGATACAGATCAGTGCCTTACTTTGCAGCAAAGCTAGACCTAAATGCTCATGATGATAATGATGCTTCTTCAAGTTGCAGACAGTTTGACTTGAATGGCTTCAGCTGGAGCTAA

Protein Analysis

478

Amino Acids

53.14

Weight (kDa)

7.69

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 65 - 116 1.9e-09 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 170 - 192 4e-09 MYB-CC type transfactor, LHEQLE motif
Myb_CC_LHEQLE PF14379 221 - 246 1.5e-09 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 714
AciI CCGC 2 cut(s) 667, 1052
AclWI GGATC 1 cut(s) 949
AcuI CTGAAG 3 cut(s) 320, 462, 1405
AfaI GTAC 3 cut(s) 8, 344, 760
AflIII ACRYGT 1 cut(s) 1110
AgsI TTSAA 7 cut(s) 78, 539, 773, 788, 829, 1392, 1414
AhlI ACTAGT 2 cut(s) 380, 1070
AjnI CCWGG 3 cut(s) 657, 729, 1020
AleI CACNNNNGTG 1 cut(s) 972
Alw21I GWGCWC 4 cut(s) 467, 476, 584, 849
Alw26I GTCTC 3 cut(s) 696, 728, 1233
AlwI GGATC 1 cut(s) 949
AoxI GGCC 3 cut(s) 163, 304, 1281
ArsI GACNNNNNNTTYG 2 cut(s) 1057, 1089
AseI ATTAAT 1 cut(s) 434
Asp700I GAANNNNTTC 1 cut(s) 1418
AspLEI GCGC 1 cut(s) 1048
AspS9I GGNCC 4 cut(s) 204, 401, 952, 1281
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 3 cut(s) 146, 382, 1021
AvaII GGWCC 3 cut(s) 204, 401, 952
BaeGI GKGCMC 2 cut(s) 375, 872
BanII GRGCYC 1 cut(s) 849
BauI CACGAG 1 cut(s) 218
Bbv12I GWGCWC 4 cut(s) 467, 476, 584, 849
BbvCI CCTCAGC 1 cut(s) 873
BccI CCATC 3 cut(s) 18, 1209, 1241
BciT130I CCWGG 3 cut(s) 659, 731, 1022
BciVI GTATCC 2 cut(s) 823, 1316
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 3 cut(s) 696, 728, 1233
BcuI ACTAGT 2 cut(s) 380, 1070
BfaI CTAG 6 cut(s) 192, 381, 740, 1071, 1176, 1355
BfmI CTRYAG 4 cut(s) 125, 150, 707, 1161
BfuAI ACCTGC 1 cut(s) 714
BfuI GTATCC 2 cut(s) 823, 1316
BlpI GCTNAGC 1 cut(s) 350
Bme1390I CCNGG 4 cut(s) 303, 659, 731, 1022
Bme18I GGWCC 3 cut(s) 204, 401, 952
BmgT120I GGNCC 4 cut(s) 204, 401, 952, 1281
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 4 cut(s) 303, 659, 731, 1022
BmsI GCATC 5 cut(s) 81, 172, 519, 1126, 1372
BoxI GACNNNNGTC 1 cut(s) 1016
BpmI CTGGAG 2 cut(s) 545, 740
Bpu10I CCTNAGC 1 cut(s) 873
Bpu1102I GCTNAGC 1 cut(s) 350
BpuEI CTTGAG 3 cut(s) 587, 678, 1302
BpuMI CCSGG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 89
BsaBI GATNNNNATC 2 cut(s) 436, 1327
BsaJI CCNNGG 2 cut(s) 46, 729
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bse1I ACTGG 4 cut(s) 404, 410, 481, 528
Bse3DI GCAATG 1 cut(s) 480
Bse8I GATNNNNATC 2 cut(s) 436, 1327
BseBI CCWGG 3 cut(s) 659, 731, 1022
BseCI ATCGAT 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 46, 729
BseGI GGATG 2 cut(s) 60, 99
BseJI GATNNNNATC 2 cut(s) 436, 1327
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 4 cut(s) 606, 786, 887, 1257
BseNI ACTGG 4 cut(s) 404, 410, 481, 528
BseRI GAGGAG 1 cut(s) 267
BseSI GKGCMC 2 cut(s) 375, 872
BshFI GGCC 3 cut(s) 165, 306, 1283
BshVI ATCGAT 1 cut(s) 89
BsiHKAI GWGCWC 4 cut(s) 467, 476, 584, 849
BsiSI CCGG 1 cut(s) 303
BsmAI GTCTC 3 cut(s) 696, 728, 1233
BsmBI CGTCTC 1 cut(s) 728
BsnI GGCC 3 cut(s) 165, 306, 1283
Bsp1286I GDGCHC 6 cut(s) 375, 467, 476, 584, 849, 872
Bsp143I GATC 5 cut(s) 57, 211, 941, 958, 1328
Bsp1720I GCTNAGC 1 cut(s) 350
BspACI CCGC 2 cut(s) 667, 1052
BspANI GGCC 3 cut(s) 165, 306, 1283
BspCNI CTCAG 4 cut(s) 605, 787, 886, 1256
BspDI ATCGAT 1 cut(s) 89
BspHI TCATGA 1 cut(s) 1369
BspLI GGNNCC 1 cut(s) 206
BspMAI CTGCAG 3 cut(s) 154, 711, 1165
BspMI ACCTGC 1 cut(s) 714
BspPI GGATC 1 cut(s) 949
BsrDI GCAATG 1 cut(s) 480
BsrI ACTGG 4 cut(s) 404, 410, 481, 528
BssECI CCNNGG 2 cut(s) 46, 729
BssMI GATC 5 cut(s) 57, 211, 941, 958, 1328
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 3 cut(s) 659, 731, 1022
Bst4CI ACNGT 3 cut(s) 280, 763, 1404
Bst6I CTCTTC 2 cut(s) 838, 1231
BstAPI GCANNNNNTGC 1 cut(s) 715
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 7 cut(s) 350, 592, 754, 795, 873, 986, 1243
BstEII GGTNACC 1 cut(s) 134
BstF5I GGATG 2 cut(s) 60, 99
BstHHI GCGC 1 cut(s) 1048
BstKTI GATC 5 cut(s) 60, 214, 944, 961, 1331
BstMAI GTCTC 3 cut(s) 696, 728, 1233
BstMBI GATC 5 cut(s) 57, 211, 941, 958, 1328
BstMWI GCNNNNNNNGC 8 cut(s) 263, 370, 471, 559, 673, 715, 1057, 1289
BstNI CCWGG 3 cut(s) 659, 731, 1022
BstNSI RCATGY 1 cut(s) 1114
BstPAI GACNNNNGTC 1 cut(s) 1016
BstPI GGTNACC 1 cut(s) 134
BstSCI CCNGG 4 cut(s) 301, 657, 729, 1020
BstSFI CTRYAG 4 cut(s) 125, 150, 707, 1161
BstSLI GKGCMC 2 cut(s) 375, 872
Bsu15I ATCGAT 1 cut(s) 89
BsuI GTATCC 2 cut(s) 823, 1316
BsuRI GGCC 3 cut(s) 165, 306, 1283
BsuTUI ATCGAT 1 cut(s) 89
BtsCI GGATG 2 cut(s) 60, 99
BtsI GCAGTG 1 cut(s) 979
BtsIMutI CAGTG 5 cut(s) 423, 474, 521, 979, 1338
BveI ACCTGC 1 cut(s) 714
Cac8I GCNNGC 1 cut(s) 580
CciI TCATGA 1 cut(s) 1369
CfoI GCGC 1 cut(s) 1048
Cfr13I GGNCC 4 cut(s) 204, 401, 952, 1281
ClaI ATCGAT 1 cut(s) 89
CseI GACGC 1 cut(s) 745
CsiI ACCWGGT 1 cut(s) 657
Csp6I GTAC 3 cut(s) 7, 343, 759
CviAII CATG 5 cut(s) 365, 557, 1111, 1189, 1370
CviQI GTAC 3 cut(s) 7, 343, 759
DdeI CTNAG 7 cut(s) 350, 592, 754, 795, 873, 986, 1243
DpnI GATC 5 cut(s) 59, 213, 943, 960, 1330
DpnII GATC 5 cut(s) 57, 211, 941, 958, 1328
Eam1104I CTCTTC 2 cut(s) 838, 1231
EarI CTCTTC 2 cut(s) 838, 1231
Ecl136II GAGCTC 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 46
Eco147I AGGCCT 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 849
Eco47I GGWCC 3 cut(s) 204, 401, 952
Eco53kI GAGCTC 1 cut(s) 847
Eco57I CTGAAG 3 cut(s) 320, 462, 1405
Eco91I GGTNACC 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 847
EcoO65I GGTNACC 1 cut(s) 134
EcoRII CCWGG 3 cut(s) 657, 729, 1020
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 849
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 728
FaeI CATG 5 cut(s) 368, 560, 1114, 1192, 1373
FatI CATG 5 cut(s) 364, 556, 1110, 1188, 1369
FokI GGATG 2 cut(s) 47, 86
FriOI GRGCYC 1 cut(s) 849
FspBI CTAG 6 cut(s) 192, 381, 740, 1071, 1176, 1355
GlaI GCGC 1 cut(s) 1047
GsuI CTGGAG 2 cut(s) 545, 740
HaeIII GGCC 3 cut(s) 165, 306, 1283
HapII CCGG 1 cut(s) 303
HgaI GACGC 1 cut(s) 745
HhaI GCGC 1 cut(s) 1048
Hin1II CATG 5 cut(s) 368, 560, 1114, 1192, 1373
Hin6I GCGC 1 cut(s) 1046
HinP1I GCGC 1 cut(s) 1046
HincII GTYRAC 2 cut(s) 241, 1076
HindII GTYRAC 2 cut(s) 241, 1076
HinfI GANTC 9 cut(s) 158, 195, 298, 328, 358, 689, 1219, 1241, 1286
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 1 cut(s) 303
HphI GGTGA 3 cut(s) 146, 382, 1021
Hpy166II GTNNAC 2 cut(s) 241, 1076
Hpy188I TCNGA 8 cut(s) 109, 339, 442, 459, 648, 796, 963, 1246
Hpy188III TCNNGA 3 cut(s) 544, 1223, 1370
Hpy8I GTNNAC 2 cut(s) 241, 1076
HpyAV CCTTC 6 cut(s) 114, 543, 620, 847, 932, 1093
HpyCH4III ACNGT 3 cut(s) 280, 763, 1404
HpyCH4IV ACGT 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 8 cut(s) 263, 370, 471, 559, 673, 715, 1057, 1289
HpyF3I CTNAG 7 cut(s) 350, 592, 754, 795, 873, 986, 1243
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 5 cut(s) 368, 560, 1114, 1192, 1373
HspAI GCGC 1 cut(s) 1046
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 5 cut(s) 57, 211, 941, 958, 1328
LmnI GCTCC 3 cut(s) 254, 1065, 1428
LweI GCATC 5 cut(s) 81, 172, 519, 1126, 1372
MabI ACCWGGT 1 cut(s) 657
MaeI CTAG 6 cut(s) 192, 381, 740, 1071, 1176, 1355
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 4 cut(s) 134, 376, 1009, 1178
MalI GATC 5 cut(s) 59, 213, 943, 960, 1330
MboI GATC 5 cut(s) 57, 211, 941, 958, 1328
MboII GAAGA 7 cut(s) 66, 67, 326, 825, 1103, 1248, 1380
MhlI GDGCHC 6 cut(s) 375, 467, 476, 584, 849, 872
MluCI AATT 6 cut(s) 396, 534, 638, 854, 994, 1081
MlyI GAGTC 4 cut(s) 189, 337, 698, 1235
MnlI CCTC 9 cut(s) 182, 226, 245, 362, 398, 562, 882, 993, 1132
MroXI GAANNNNTTC 1 cut(s) 1418
MseI TTAA 4 cut(s) 240, 323, 434, 1080
MslI CAYNNNNRTG 1 cut(s) 972
MspA1I CMGCKG 3 cut(s) 667, 921, 1425
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 4 cut(s) 303, 659, 731, 1022
MvaI CCWGG 3 cut(s) 659, 731, 1022
MwoI GCNNNNNNNGC 8 cut(s) 263, 370, 471, 559, 673, 715, 1057, 1289
NciI CCSGG 1 cut(s) 303
NdeII GATC 5 cut(s) 57, 211, 941, 958, 1328
NlaIII CATG 5 cut(s) 368, 560, 1114, 1192, 1373
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 3 cut(s) 134, 1009, 1178
NspI RCATGY 1 cut(s) 1114
OliI CACNNNNGTG 1 cut(s) 972
PagI TCATGA 1 cut(s) 1369
PceI AGGCCT 1 cut(s) 165
PciI ACATGT 1 cut(s) 1110
PdmI GAANNNNTTC 1 cut(s) 1418
PfeI GAWTC 5 cut(s) 158, 298, 358, 1219, 1286
PfoI TCCNGGA 1 cut(s) 1020
PleI GAGTC 4 cut(s) 189, 336, 697, 1235
PpsI GAGTC 4 cut(s) 189, 336, 697, 1235
PscI ACATGT 1 cut(s) 1110
PshAI GACNNNNGTC 1 cut(s) 1016
PshBI ATTAAT 1 cut(s) 434
Psp124BI GAGCTC 1 cut(s) 849
Psp6I CCWGG 3 cut(s) 657, 729, 1020
PspEI GGTNACC 1 cut(s) 134
PspGI CCWGG 3 cut(s) 657, 729, 1020
PspN4I GGNNCC 1 cut(s) 206
PspPI GGNCC 4 cut(s) 204, 401, 952, 1281
PstI CTGCAG 3 cut(s) 154, 711, 1165
PvuII CAGCTG 2 cut(s) 921, 1425
RsaI GTAC 3 cut(s) 8, 344, 760
RsaNI GTAC 3 cut(s) 7, 343, 759
RseI CAYNNNNRTG 1 cut(s) 972
SacI GAGCTC 1 cut(s) 849
SaqAI TTAA 4 cut(s) 240, 323, 434, 1080
Sau3AI GATC 5 cut(s) 57, 211, 941, 958, 1328
Sau96I GGNCC 4 cut(s) 204, 401, 952, 1281
SbfI CCTGCAGG 1 cut(s) 154
SchI GAGTC 4 cut(s) 189, 337, 698, 1235
ScrFI CCNGG 4 cut(s) 303, 659, 731, 1022
SdaI CCTGCAGG 1 cut(s) 154
SduI GDGCHC 6 cut(s) 375, 467, 476, 584, 849, 872
SexAI ACCWGGT 1 cut(s) 657
SfaNI GCATC 5 cut(s) 81, 172, 519, 1126, 1372
SfcI CTRYAG 4 cut(s) 125, 150, 707, 1161
SinI GGWCC 3 cut(s) 204, 401, 952
SmiMI CAYNNNNRTG 1 cut(s) 972
SmlI CTYRAG 3 cut(s) 566, 693, 1317
SmoI CTYRAG 3 cut(s) 566, 693, 1317
SpeI ACTAGT 2 cut(s) 380, 1070
Sse8387I CCTGCAGG 1 cut(s) 154
Sse9I AATT 6 cut(s) 396, 534, 638, 854, 994, 1081
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 2 cut(s) 667, 1052
SspMI CTAG 6 cut(s) 192, 381, 740, 1071, 1176, 1355
SstI GAGCTC 1 cut(s) 849
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 4 cut(s) 301, 657, 729, 1020
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 3 cut(s) 280, 763, 1404
TaiI ACGT 1 cut(s) 378
TaqI TCGA 4 cut(s) 89, 231, 944, 1224
TaqII GACCGA 1 cut(s) 665
TasI AATT 6 cut(s) 396, 534, 638, 854, 994, 1081
TatI WGTACW 1 cut(s) 342
TauI GCSGC 2 cut(s) 670, 1054
TfiI GAWTC 5 cut(s) 158, 298, 358, 1219, 1286
Tru1I TTAA 4 cut(s) 240, 323, 434, 1080
Tru9I TTAA 4 cut(s) 240, 323, 434, 1080
TscAI CASTG 5 cut(s) 423, 481, 528, 979, 1338
TseFI GTSAC 3 cut(s) 134, 1009, 1178
Tsp45I GTSAC 3 cut(s) 134, 1009, 1178
TspDTI ATGAA 2 cut(s) 299, 1112
TspRI CASTG 5 cut(s) 423, 481, 528, 979, 1338
VpaK11BI GGWCC 3 cut(s) 204, 401, 952
VspI ATTAAT 1 cut(s) 434
XceI RCATGY 1 cut(s) 1114
XmnI GAANNNNTTC 1 cut(s) 1418
XspI CTAG 6 cut(s) 192, 381, 740, 1071, 1176, 1355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.