Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003414

Physical Location & Seq

Genomic Coordinates Forward (+)

56004171 .. 56007507

Gene Structure 3337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGCCTGGTATCAGACAATTCCAGATTCTGATCAGAGCATTTCTGATGAGGAAGAACCGGACCAAAATTGGGCGAACAAATGCGCTACGCTCGGCGGAACCACAGAGAAAAAGGAATTGTTACAAATTTCATCTCGGCTAGAAATGCTCAAAGGTGCGAATGCGAAGGCTTGCAATTTGGAAGATGAAGTTAGCTCTGACTATGAGGTGAACAATGTGGTGTCAAAAGTTTCTGTTAATGGCAGTGCTAAAGAGTTGCGAAAAAAAGAGGATGTTCATAGCTTTTGGAGCGATAAACAAGACGAATTACACTCGTGGTCTGCTGTGAGTAAAGAAGCTGAGGCACTCATGCGTTTGAATGAAAAAACTTCTTGCTCATTGTCACTGTCTGCTTACTCGAATTTAAAGAAATCGTCTAAAGGAGCCAAAGGCAAAGGCAAACCAAAATTTTTGTTCCGTTTTCCGACACACAAGGAAGGAACCTCGTCCCATTCTATATCTAAGAATGATAGTGATGTGTCATTCAGGGTTCAAGAACTGCCTGAAAGGTTGGATGCAATTGAGCCTAGAAATGTAGATCATTCAGATGTTGAACTTATTGAGGATATTCAGGGGGAAGAGGAATCAGAGATTGTGCTTAGAAATGAAGAACATTCAGATGTTGAACTTCTTGAGGACATTTCAGGGGAAGAGGAAAGTTTGTTAGAGGTTGTGCCTTTTGAAGCCAAGGCTATTCGGCATGGATGTATGGGGCAGTCAATGGCTGAGCTTCTAGATGGCCTTCAAGATAAGACGACTATTTGGAGAAAAAGTTCTAGAAAGCATAGTAGAAAACGACGTAAAAAGGAGCAGCCTGTTGTAAAGTGTGCATCTCCTCTGGGAGATGGAACTTTTGACATTGAAAGCTCTCCTGAGCACTTGGGTCATGGATTGCCAAGTGATATCAAGATTGATGATCAAATTTTGAAGCTTGCTGATCCAGAAATGAAGAGGCAGACATTGGTAGATCGATTTCAGGAAGCTATGAGTGACAGATTCCTTGTTGCAGTGCCCAAAACTTTAAAGAGTGGATTATTTGGGAAACTGCAGCAGGTGGTGCAGAGTGAGAAAGAAACTGATATAGAATTCTTGAAGAAGATCCAGGAGGGAGCTAGCGAAAATGACCCAAACTGCATGGATGTGAAGATTCTTTCAAAATACCTGGATGCAAAGCTTACCGTGTGTCACTGCTCCTTCGGTAATAACTCAAAGCGCCTCCCATCGCCAGAGGTCTGCGAAGAAATGGTTGACGAAGGACCGGAAAGGACTATTATTTTCAATCCACGAGTTTGCAATGATATTGACCTTGATATTGGGAAATGGATTCGTATACACCCTCCATGGAGGGACATCCGTGTCGGCACTGCTCAAAACATAATCCTGTCGACATATTTCTCTGAAATTTCAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

483

Amino Acids

54.48

Weight (kDa)

5.17

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02960 AT1G02965
fragaria_vesca	FvH4_2g25160 FvH4_2g25160 FvH4_2g25160
malus_domestica	MD03G1283300.v1.1
prunus_persica	Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1 Prupe.8G256400_v2.0.a1
pyrus_communis	pycom03g22410
rosa_chinensis	RchiOBHm_Chr6g0293271
rosa_laevigata	RLG00000011962
rosa_multiflora	Rmu_ssc0000162.1_g000034
rosa_roxburghii	Rroxscaffold_7G00174290
rosa_rugosa	Rorug06G0233900 Rorug06G0234000 Rorug06G0234100 Rorug06G0234100 Rorug06G0234100 Rorug06G0234200
rosa_samantha	Rh6AG346900 Rh6AG347000 Rh6BG354300 Rh6CG360800 Rh6DG347300 Rh6DG347400
rosa_wichuraiana	Rw6G030200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1081
AasI	GACNNNNNNGTC	1 cut(s)	1394
Acc36I	ACCTGC	1 cut(s)	1081
AccI	GTMKAC	2 cut(s)	1369, 1424
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	2 cut(s)	971, 1132
AcsI	RAATTY	6 cut(s)	126, 400, 446, 960, 1124, 1440
AfiI	CCNNNNNNNGG	1 cut(s)	70
AjnI	CCWGG	3 cut(s)	5, 1140, 1200
AloI	GAACNNNNNNTCC	2 cut(s)	796, 828
AluBI	AGCT	9 cut(s)	195, 282, 338, 769, 906, 970, 1022, 1151, 1213
AluI	AGCT	9 cut(s)	195, 282, 338, 769, 906, 970, 1022, 1151, 1213
Alw21I	GWGCWC	1 cut(s)	918
AlwI	GGATC	2 cut(s)	971, 1132
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	2 cut(s)	3, 778
ApeKI	GCWGC	2 cut(s)	850, 1087
ApoI	RAATTY	6 cut(s)	126, 400, 446, 960, 1124, 1440
Asp700I	GAANNNNTTC	1 cut(s)	811
AspLEI	GCGC	2 cut(s)	86, 1254
AspS9I	GGNCC	2 cut(s)	61, 1295
AsuHPI	GGTGA	1 cut(s)	220
AsuNHI	GCTAGC	1 cut(s)	1151
AvaII	GGWCC	2 cut(s)	61, 1295
BaeGI	GKGCMC	1 cut(s)	1053
BauI	CACGAG	2 cut(s)	313, 1323
Bbv12I	GWGCWC	1 cut(s)	918
BbvCI	CCTCAGC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	862, 1099
BccI	CCATC	3 cut(s)	770, 878, 1267
BciT130I	CCWGG	3 cut(s)	7, 1142, 1202
BclI	TGATCA	2 cut(s)	31, 955
BfaI	CTAG	5 cut(s)	140, 567, 773, 816, 1152
BfmI	CTRYAG	1 cut(s)	1085
BfoI	RGCGCY	1 cut(s)	1255
BfuAI	ACCTGC	1 cut(s)	1081
BisI	GCNGC	2 cut(s)	851, 1088
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	2 cut(s)	852, 1089
Bme1390I	CCNGG	3 cut(s)	7, 1142, 1202
Bme18I	GGWCC	2 cut(s)	61, 1295
BmgT120I	GGNCC	2 cut(s)	61, 1295
BmiI	GGNNCC	3 cut(s)	100, 424, 481
BmrFI	CCNGG	3 cut(s)	7, 1142, 1202
BmsI	GCATC	3 cut(s)	544, 878, 1195
BmtI	GCTAGC	1 cut(s)	1155
Bpu10I	CCTNAGC	2 cut(s)	339, 912
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	692
Bsa29I	ATCGAT	1 cut(s)	1009
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	726, 1379
BsaWI	WCCGGW	2 cut(s)	58, 1297
BsaXI	ACNNNNNCTCC	2 cut(s)	796, 826
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	1339
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	3 cut(s)	7, 1142, 1202
BseCI	ATCGAT	1 cut(s)	1009
BseDI	CCNNGG	2 cut(s)	726, 1379
BseGI	GGATG	6 cut(s)	277, 559, 749, 1183, 1210, 1389
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	1339
BseMII	CTCAG	3 cut(s)	330, 756, 903
BseRI	GAGGAG	1 cut(s)	864
BseSI	GKGCMC	1 cut(s)	1053
BseXI	GCAGC	2 cut(s)	862, 1099
BsgI	GTGCAG	1 cut(s)	1118
BshFI	GGCC	2 cut(s)	5, 780
BshVI	ATCGAT	1 cut(s)	1009
BsiHKAI	GWGCWC	1 cut(s)	918
BsiSI	CCGG	2 cut(s)	59, 1298
BslFI	GGGAC	2 cut(s)	472, 1400
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	2 cut(s)	472, 1400
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	5, 780
Bsp1286I	GDGCHC	2 cut(s)	918, 1053
Bsp143I	GATC	6 cut(s)	31, 577, 955, 976, 1006, 1137
Bsp1720I	GCTNAGC	1 cut(s)	765
Bsp19I	CCATGG	1 cut(s)	1379
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	5, 780
BspCNI	CTCAG	3 cut(s)	331, 757, 904
BspDI	ATCGAT	1 cut(s)	1009
BspLI	GGNNCC	3 cut(s)	100, 424, 481
BspMAI	CTGCAG	1 cut(s)	1089
BspMI	ACCTGC	1 cut(s)	1081
BspOI	GCTAGC	1 cut(s)	1155
BspPI	GGATC	2 cut(s)	971, 1132
BsrDI	GCAATG	1 cut(s)	1339
BssECI	CCNNGG	2 cut(s)	726, 1379
BssMI	GATC	6 cut(s)	31, 577, 955, 976, 1006, 1137
BssNAI	GTATAC	1 cut(s)	1370
BssSI	CACGAG	2 cut(s)	313, 1323
BssT1I	CCWWGG	2 cut(s)	726, 1379
Bst1107I	GTATAC	1 cut(s)	1370
Bst2BI	CACGAG	2 cut(s)	313, 1323
Bst2UI	CCWGG	3 cut(s)	7, 1142, 1202
Bst4CI	ACNGT	2 cut(s)	387, 1219
Bst6I	CTCTTC	3 cut(s)	612, 684, 983
BstAPI	GCANNNNNTGC	1 cut(s)	1096
BstC8I	GCNNGC	3 cut(s)	172, 972, 1153
BstDEI	CTNAG	5 cut(s)	339, 501, 638, 765, 912
BstDSI	CCRYGG	1 cut(s)	1379
BstF5I	GGATG	6 cut(s)	277, 559, 749, 1183, 1210, 1389
BstH2I	RGCGCY	1 cut(s)	1255
BstHHI	GCGC	2 cut(s)	86, 1254
BstKTI	GATC	6 cut(s)	34, 580, 958, 979, 1009, 1140
BstMBI	GATC	6 cut(s)	31, 577, 955, 976, 1006, 1137
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 288, 1096
BstNI	CCWGG	3 cut(s)	7, 1142, 1202
BstSCI	CCNGG	3 cut(s)	5, 1140, 1200
BstSFI	CTRYAG	1 cut(s)	1085
BstSLI	GKGCMC	1 cut(s)	1053
BstV1I	GCAGC	2 cut(s)	862, 1099
BstX2I	RGATCY	1 cut(s)	1137
BstYI	RGATCY	1 cut(s)	1137
BstZ17I	GTATAC	1 cut(s)	1370
Bsu15I	ATCGAT	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	5, 780
BsuTUI	ATCGAT	1 cut(s)	1009
BtgI	CCRYGG	1 cut(s)	1379
BtgZI	GCGATG	1 cut(s)	1245
BtsCI	GGATG	6 cut(s)	277, 559, 749, 1183, 1210, 1389
BtsI	GCAGTG	4 cut(s)	250, 1053, 1225, 1401
BtsIMutI	CAGTG	5 cut(s)	250, 383, 1053, 1225, 1401
BveI	ACCTGC	1 cut(s)	1081
Cac8I	GCNNGC	3 cut(s)	172, 972, 1153
CaiI	CAGNNNCTG	1 cut(s)	29
CfoI	GCGC	2 cut(s)	86, 1254
Cfr13I	GGNCC	2 cut(s)	61, 1295
ClaI	ATCGAT	1 cut(s)	1009
CviAII	CATG	5 cut(s)	349, 740, 926, 1174, 1380
DdeI	CTNAG	5 cut(s)	339, 501, 638, 765, 912
DpnI	GATC	6 cut(s)	33, 579, 957, 978, 1008, 1139
DpnII	GATC	6 cut(s)	31, 577, 955, 976, 1006, 1137
DraI	TTTAAA	2 cut(s)	405, 1062
DrdI	GACNNNNNNGTC	1 cut(s)	1394
DseDI	GACNNNNNNGTC	1 cut(s)	1394
Eam1104I	CTCTTC	3 cut(s)	612, 684, 983
EarI	CTCTTC	3 cut(s)	612, 684, 983
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	726, 1379
Eco32I	GATATC	1 cut(s)	943
Eco47I	GGWCC	2 cut(s)	61, 1295
EcoRI	GAATTC	1 cut(s)	1124
EcoRII	CCWGG	3 cut(s)	5, 1140, 1200
EcoRV	GATATC	1 cut(s)	943
EcoT14I	CCWWGG	2 cut(s)	726, 1379
ErhI	CCWWGG	2 cut(s)	726, 1379
FaeI	CATG	5 cut(s)	352, 743, 929, 1177, 1383
FaqI	GGGAC	2 cut(s)	472, 1400
FatI	CATG	5 cut(s)	348, 739, 925, 1173, 1379
FbaI	TGATCA	2 cut(s)	31, 955
FblI	GTMKAC	2 cut(s)	1369, 1424
Fnu4HI	GCNGC	2 cut(s)	851, 1088
FokI	GGATG	6 cut(s)	284, 566, 756, 1190, 1217, 1376
Fsp4HI	GCNGC	2 cut(s)	851, 1088
FspBI	CTAG	5 cut(s)	140, 567, 773, 816, 1152
GlaI	GCGC	2 cut(s)	85, 1253
GluI	GCNGC	2 cut(s)	851, 1088
HaeII	RGCGCY	1 cut(s)	1255
HaeIII	GGCC	2 cut(s)	5, 780
HapII	CCGG	2 cut(s)	59, 1298
HhaI	GCGC	2 cut(s)	86, 1254
Hin1II	CATG	5 cut(s)	352, 743, 929, 1177, 1383
Hin6I	GCGC	2 cut(s)	84, 1252
HinP1I	GCGC	2 cut(s)	84, 1252
HincII	GTYRAC	2 cut(s)	1288, 1425
HindII	GTYRAC	2 cut(s)	1288, 1425
HindIII	AAGCTT	2 cut(s)	968, 1211
HinfI	GANTC	5 cut(s)	26, 623, 1035, 1186, 1363
HpaII	CCGG	2 cut(s)	59, 1298
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	4 cut(s)	211, 1288, 1370, 1425
Hpy8I	GTNNAC	4 cut(s)	211, 1288, 1370, 1425
Hpy99I	CGWCG	1 cut(s)	840
HpyAV	CCTTC	5 cut(s)	160, 470, 791, 1243, 1286
HpyCH4III	ACNGT	2 cut(s)	387, 1219
HpyCH4IV	ACGT	1 cut(s)	838
HpyCH4V	TGCA	9 cut(s)	174, 557, 869, 1046, 1087, 1099, 1173, 1208, 1332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 288, 1096
HpyF3I	CTNAG	5 cut(s)	339, 501, 638, 765, 912
HpySE526I	ACGT	1 cut(s)	838
Hsp92II	CATG	5 cut(s)	352, 743, 929, 1177, 1383
HspAI	GCGC	2 cut(s)	84, 1252
Ksp22I	TGATCA	2 cut(s)	31, 955
Kzo9I	GATC	6 cut(s)	31, 577, 955, 976, 1006, 1137
LmnI	GCTCC	5 cut(s)	288, 422, 847, 1148, 1235
Lsp1109I	GCAGC	2 cut(s)	862, 1099
LweI	GCATC	3 cut(s)	544, 878, 1195
MaeI	CTAG	5 cut(s)	140, 567, 773, 816, 1152
MaeII	ACGT	1 cut(s)	838
MaeIII	GTNAC	4 cut(s)	120, 381, 1028, 1223
MalI	GATC	6 cut(s)	33, 579, 957, 978, 1008, 1139
MboI	GATC	6 cut(s)	31, 577, 955, 976, 1006, 1137
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	1 cut(s)	1137
MhlI	GDGCHC	2 cut(s)	918, 1053
MmeI	TCCRAC	2 cut(s)	488, 531
MroXI	GAANNNNTTC	1 cut(s)	811
MseI	TTAA	3 cut(s)	237, 404, 1061
MslI	CAYNNNNRTG	3 cut(s)	585, 657, 1178
MspI	CCGG	2 cut(s)	59, 1298
MspR9I	CCNGG	3 cut(s)	7, 1142, 1202
MunI	CAATTG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	3 cut(s)	7, 1142, 1202
MwoI	GCNNNNNNNGC	3 cut(s)	145, 288, 1096
NcoI	CCATGG	1 cut(s)	1379
NdeII	GATC	6 cut(s)	31, 577, 955, 976, 1006, 1137
NheI	GCTAGC	1 cut(s)	1151
NlaIII	CATG	5 cut(s)	352, 743, 929, 1177, 1383
NlaIV	GGNNCC	3 cut(s)	100, 424, 481
NmeAIII	GCCGAG	2 cut(s)	72, 115
NmuCI	GTSAC	3 cut(s)	381, 1028, 1223
PaqCI	CACCTGC	1 cut(s)	1081
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	811
PfeI	GAWTC	5 cut(s)	26, 623, 1035, 1186, 1363
PfoI	TCCNGGA	1 cut(s)	1140
PkrI	GCNGC	2 cut(s)	852, 1089
Psp6I	CCWGG	3 cut(s)	5, 1140, 1200
PspGI	CCWGG	3 cut(s)	5, 1140, 1200
PspN4I	GGNNCC	3 cut(s)	100, 424, 481
PspPI	GGNCC	2 cut(s)	61, 1295
PstI	CTGCAG	1 cut(s)	1089
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	1137
RseI	CAYNNNNRTG	3 cut(s)	585, 657, 1178
SalI	GTCGAC	1 cut(s)	1423
SaqAI	TTAA	3 cut(s)	237, 404, 1061
SatI	GCNGC	2 cut(s)	851, 1088
Sau3AI	GATC	6 cut(s)	31, 577, 955, 976, 1006, 1137
Sau96I	GGNCC	2 cut(s)	61, 1295
ScrFI	CCNGG	3 cut(s)	7, 1142, 1202
SduI	GDGCHC	2 cut(s)	918, 1053
SfaNI	GCATC	3 cut(s)	544, 878, 1195
SfcI	CTRYAG	1 cut(s)	1085
SinI	GGWCC	2 cut(s)	61, 1295
SmiMI	CAYNNNNRTG	3 cut(s)	585, 657, 1178
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	5 cut(s)	140, 567, 773, 816, 1152
StyD4I	CCNGG	3 cut(s)	5, 1140, 1200
StyI	CCWWGG	2 cut(s)	726, 1379
TaaI	ACNGT	2 cut(s)	387, 1219
TaiI	ACGT	1 cut(s)	841
TaqI	TCGA	3 cut(s)	398, 1009, 1424
TfiI	GAWTC	5 cut(s)	26, 623, 1035, 1186, 1363
Tru1I	TTAA	3 cut(s)	237, 404, 1061
Tru9I	TTAA	3 cut(s)	237, 404, 1061
TscAI	CASTG	5 cut(s)	250, 390, 1053, 1232, 1408
TseFI	GTSAC	3 cut(s)	381, 1028, 1223
TseI	GCWGC	2 cut(s)	850, 1087
Tsp45I	GTSAC	3 cut(s)	381, 1028, 1223
TspDTI	ATGAA	6 cut(s)	120, 201, 266, 375, 660, 1001
TspGWI	ACGGA	2 cut(s)	446, 1382
TspRI	CASTG	5 cut(s)	250, 390, 1053, 1232, 1408
VpaK11BI	GGWCC	2 cut(s)	61, 1295
XapI	RAATTY	6 cut(s)	126, 400, 446, 960, 1124, 1440
XbaI	TCTAGA	2 cut(s)	772, 815
XmiI	GTMKAC	2 cut(s)	1369, 1424
XmnI	GAANNNNTTC	1 cut(s)	811
XspI	CTAG	5 cut(s)	140, 567, 773, 816, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.