RchiOBHm_Chr5g0006801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011535
Physical Location & Seq
Reverse (-)
4222202 .. 4222989
788 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGGAGCGTTCCACAGCCACTACCACTTCCGGGAGAGCAGTGATGAACGCCAGTGACTTTTCACGGCGGTTTCCTGCGGGGCGCCCTATTCCGAAGAGGGGTCAAGTGAAGATGGGGATAGTGGTGGGACTGGCCAATTCTGTGGCTTCCGTTTTCACTCCTCAGCGTCCAGGCATGTACAAGCAGCATTCTAGTAACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.21

Weight (kDa)

11.89

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AciI CCGC 2 cut(s) 67, 77
AcoI YGGCCR 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 30, 98
AjnI CCWGG 1 cut(s) 169
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 31
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 31
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 31, 171
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 2 cut(s) 31, 171
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 98
Bse1I ACTGG 2 cut(s) 51, 135
BseBI CCWGG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 30, 98
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 51, 135
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 30, 98
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 134
Bsp1407I TGTACA 1 cut(s) 177
BspACI CCGC 2 cut(s) 67, 77
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 2 cut(s) 51, 135
BssNI GRCGYC 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 2 cut(s) 29, 169
BstV1I GCAGC 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 58
CfoI GCGC 1 cut(s) 84
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 178
CviAII CATG 1 cut(s) 175
CviJI RGCY 3 cut(s) 17, 134, 146
CviKI_1 RGCY 3 cut(s) 17, 134, 146
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 162
DinI GGCGCC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 169
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
FaeI CATG 1 cut(s) 178
FaiI YATR 1 cut(s) 176
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HpaII CCGG 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 93
HpyF3I CTNAG 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 43, 64, 87, 116, 156, 183
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 53, 194
MboII GAAGA 2 cut(s) 106, 121
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 134
Mly113I GGCGCC 1 cut(s) 82
MnlI CCTC 2 cut(s) 90, 171
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 2 cut(s) 31, 171
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 1 cut(s) 171
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 31
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 1 cut(s) 178
PctI GAATGC 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 29
PkrI GCNGC 1 cut(s) 186
PluTI GGCGCC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 83
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SatI GCNGC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 31, 171
SfoI GGCGCC 1 cut(s) 83
Sse9I AATT 1 cut(s) 136
SsiI CCGC 2 cut(s) 67, 77
SspDI GGCGCC 1 cut(s) 81
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 29, 169
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 177
TscAI CASTG 2 cut(s) 45, 58
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 2 cut(s) 45, 58
XceI RCATGY 1 cut(s) 178
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.