RchiOBHm_Chr5g0039401

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005748
Physical Location & Seq
Reverse (-)
34088770 .. 34092027
3258 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1461 bp
ATGGCCGCCGACTACGAACCTCCTTCTTTCTCTCTCGGACTCGATTTCGGGTTCGAATCGGAGCTCCAAACAGCTGCTCCGCCCGACTCCAGTCCTCCGCGTCCGGTTGACACTGATGTGGATCGAGAGATCGAGCCGCCGCGGGAGCTCAAGAGGCTGAAGCGAGGTCTGCCGGAGAAGCGGGAGCCCCCAACGACGCCGTTTTGGAGTATTGAAGATGACATCGAAGAGTTCTCTTCTCCCGAAGATACTATTCGAGATGTGCAACGGTCAACACAGTACCAAACATCCTGTAGTAGTTCTAAAGTCCCGTTGCGTGGAAGTGGGGTTTTAGCTTCACAATCATCCAACCATAGCATTGGAAGGAAAAGGATTCATATTTCTGATGTCCCAGCTTCTGTGAGTTTGGAGGCAAGCCACAAAGAATTTGTTTTTCCAAAGTTAACTACCAGCCCTCTTCGTAGGTTTCAGTTAATTGATTCCGATTCTGATGATCCTTCAGTCAGTCATAGTGTTAGTAGGGTTACTTCTAAGGTTGACTCATCATCAAAGAAGCAACACACAAACCCTGGCCATTCTGCAACTACTAGTGGTACAAACAAAAATGCATCTACAAGTATGCCTGAAGACGTTGATTTGTGGAAAAATTTTAGTCCAATCAAGAAGTTTAACATTCCAACACCTGCTTTGGATGAGGTATGTCAAGAATACTTCCAATCTGTGAAGGATAAGACTACTCAAAATCTGGAGAGGGATGCATATCTGTATACCAATGAGAATTTTCATGAAACGACACCCAGTGGTCAAGATGTTGAACAACTCTGGAATGTGGCTGATCCCCTTCCACCCGCCCATCATTACTTTTTCCACGATGATCCAAAGATTCGAAAGTTAGTCTCTAGTCGCTTGCCGAATTTTTCCCCCTTGGGTGCTGTTAGTGTCGGTGGAAATCAAGTGACTGGTGTATCAGTTATTGATTACATGGGTCAATTTAGCAATGGAGAAGCTTCAAAACGGACAGTGAATCGGAGACAAAGTATTTCAAACATATCAAATGTTGAAGAAGTCTTGCATGGTTCTGGAAACTGGGTGAACCCAAAAGGTAAAGCTAAACAGAAAGGTAGTGTCAAGCGGAGTGTAAACAAGGGAAGAAATAAGTCGGTCAAATCAAACACCGGGAACATGGAGCATGCTTCTGGAAACTGGGTGGAACCCAGAATCTCTGCCAGCAAAAAGCGGATTCAAGCAAATGCACAATCTTCTGGTGAATGGTACACACCTAGTCAAAGTGGTCAAGCTAGTGGGCAAGCTGGTGGTCATTGGTATACAGGTCCTGGTGGAAGGAAGGTTTATGTTAGTAAAACTGGGCAGGAATTGACAGGTCAAACAGCCTACAGACTGTACTCAAAGGAAAGTGGGAAACGGGCTGTGAAGGCCAGAAAAGGGAAAGCCAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

486

Amino Acids

53.58

Weight (kDa)

9.32

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc36I ACCTGC 1 cut(s) 691
AccI GTMKAC 2 cut(s) 767, 1325
AccII CGCG 2 cut(s) 100, 142
AclWI GGATC 4 cut(s) 129, 488, 830, 869
AcoI YGGCCR 2 cut(s) 3, 571
AcsI RAATTY 4 cut(s) 425, 646, 778, 913
AcuI CTGAAG 3 cut(s) 179, 483, 645
AcyI GRCGYC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 800
AfaI GTAC 4 cut(s) 281, 595, 1274, 1403
AfiI CCNNNNNNNGG 2 cut(s) 317, 1443
AgsI TTSAA 6 cut(s) 215, 815, 1011, 1044, 1061, 1244
AhlI ACTAGT 1 cut(s) 587
AjnI CCWGG 2 cut(s) 568, 1333
AleI CACNNNNGTG 1 cut(s) 116
AluBI AGCT 9 cut(s) 64, 74, 148, 335, 395, 1007, 1109, 1298, 1310
AluI AGCT 9 cut(s) 64, 74, 148, 335, 395, 1007, 1109, 1298, 1310
Alw21I GWGCWC 2 cut(s) 66, 150
Alw26I GTCTC 2 cut(s) 901, 1024
AlwI GGATC 4 cut(s) 129, 488, 830, 869
AlwNI CAGNNNCTG 2 cut(s) 398, 1334
AoxI GGCC 3 cut(s) 3, 571, 1434
ApeKI GCWGC 1 cut(s) 74
ApoI RAATTY 4 cut(s) 425, 646, 778, 913
AspS9I GGNCC 1 cut(s) 1331
AsuC2I CCSGG 1 cut(s) 1177
AsuHPI GGTGA 2 cut(s) 1102, 1277
AsuII TTCGAA 2 cut(s) 54, 886
AvaII GGWCC 1 cut(s) 1331
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BalI TGGCCA 1 cut(s) 573
BanII GRGCYC 3 cut(s) 66, 150, 189
BarI GAAGNNNNNNTAC 2 cut(s) 511, 543
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 2 cut(s) 66, 150
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 861
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 570, 1335
BcnI CCSGG 1 cut(s) 1177
BcoDI GTCTC 2 cut(s) 901, 1024
BcuI ACTAGT 1 cut(s) 587
BfaI CTAG 4 cut(s) 588, 900, 1281, 1299
BfmI CTRYAG 2 cut(s) 292, 1393
BfuAI ACCTGC 1 cut(s) 691
BisI GCNGC 4 cut(s) 6, 75, 137, 140
BlsI GCNGC 4 cut(s) 7, 76, 138, 141
Bme1390I CCNGG 3 cut(s) 570, 1177, 1335
Bme18I GGWCC 1 cut(s) 1331
BmgT120I GGNCC 1 cut(s) 1331
BmiI GGNNCC 2 cut(s) 186, 1212
BmrFI CCNGG 3 cut(s) 570, 1177, 1335
BmrI ACTGGG 4 cut(s) 792, 1096, 1213, 1374
BmsI GCATC 2 cut(s) 617, 745
BmuI ACTGGG 4 cut(s) 792, 1096, 1213, 1374
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 633
BpmI CTGGAG 2 cut(s) 73, 767
Bpu14I TTCGAA 2 cut(s) 54, 886
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 1177
BsaBI GATNNNNATC 2 cut(s) 120, 759
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 3 cut(s) 140, 568, 924
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 4 cut(s) 61, 91, 1021, 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 1443
Bse1I ACTGG 6 cut(s) 90, 798, 964, 1091, 1208, 1369
Bse3DI GCAATG 1 cut(s) 1003
Bse8I GATNNNNATC 2 cut(s) 120, 759
BseBI CCWGG 2 cut(s) 570, 1335
BseDI CCNNGG 3 cut(s) 140, 568, 924
BseGI GGATG 4 cut(s) 287, 344, 697, 760
BseJI GATNNNNATC 2 cut(s) 120, 759
BseLI CCNNNNNNNGG 2 cut(s) 317, 1443
BseMI GCAATG 1 cut(s) 1003
BseNI ACTGG 6 cut(s) 90, 798, 964, 1091, 1208, 1369
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 391
Bsh1236I CGCG 2 cut(s) 100, 142
BshFI GGCC 3 cut(s) 5, 573, 1436
BsiHKAI GWGCWC 2 cut(s) 66, 150
BsiSI CCGG 3 cut(s) 104, 173, 1176
BslFI GGGAC 2 cut(s) 293, 374
BslI CCNNNNNNNGG 2 cut(s) 317, 1443
BsmAI GTCTC 2 cut(s) 901, 1024
BsmFI GGGAC 2 cut(s) 293, 374
BsnI GGCC 3 cut(s) 5, 573, 1436
Bsp119I TTCGAA 2 cut(s) 54, 886
Bsp1286I GDGCHC 3 cut(s) 66, 150, 189
Bsp143I GATC 5 cut(s) 121, 129, 493, 835, 874
BspANI GGCC 3 cut(s) 5, 573, 1436
BspFNI CGCG 2 cut(s) 100, 142
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 2 cut(s) 186, 1212
BspMI ACCTGC 1 cut(s) 691
BspPI GGATC 4 cut(s) 129, 488, 830, 869
BspT104I TTCGAA 2 cut(s) 54, 886
BsrDI GCAATG 1 cut(s) 1003
BsrI ACTGG 6 cut(s) 90, 798, 964, 1091, 1208, 1369
BssECI CCNNGG 3 cut(s) 140, 568, 924
BssMI GATC 5 cut(s) 121, 129, 493, 835, 874
BssNAI GTATAC 2 cut(s) 768, 1326
BssNI GRCGYC 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 924
Bst1107I GTATAC 2 cut(s) 768, 1326
Bst2UI CCWGG 2 cut(s) 570, 1335
Bst4CI ACNGT 4 cut(s) 270, 279, 1021, 1401
Bst6I CTCTTC 3 cut(s) 222, 241, 462
BstACI GRCGYC 1 cut(s) 197
BstBI TTCGAA 2 cut(s) 54, 886
BstC8I GCNNGC 5 cut(s) 415, 908, 1191, 1228, 1308
BstDEI CTNAG 1 cut(s) 531
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 4 cut(s) 287, 344, 697, 760
BstFNI CGCG 2 cut(s) 100, 142
BstKTI GATC 5 cut(s) 124, 132, 496, 838, 877
BstMAI GTCTC 2 cut(s) 901, 1024
BstMBI GATC 5 cut(s) 121, 129, 493, 835, 874
BstMWI GCNNNNNNNGC 5 cut(s) 145, 154, 169, 178, 1433
BstNI CCWGG 2 cut(s) 570, 1335
BstNSI RCATGY 1 cut(s) 1193
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 568, 1175, 1333
BstSFI CTRYAG 2 cut(s) 292, 1393
BstUI CGCG 2 cut(s) 100, 142
BstV1I GCAGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 633
BstXI CCANNNNNNTGG 1 cut(s) 359
BstZ17I GTATAC 2 cut(s) 768, 1326
BsuRI GGCC 3 cut(s) 5, 573, 1436
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 4 cut(s) 287, 344, 697, 760
BtsIMutI CAGTG 3 cut(s) 111, 805, 1026
BveI ACCTGC 1 cut(s) 691
Cac8I GCNNGC 5 cut(s) 415, 908, 1191, 1228, 1308
CaiI CAGNNNCTG 2 cut(s) 398, 1334
CciI TCATGA 1 cut(s) 784
Cfr13I GGNCC 1 cut(s) 1331
Cfr42I CCGCGG 1 cut(s) 143
CseI GACGC 2 cut(s) 89, 205
Csp6I GTAC 4 cut(s) 280, 594, 1273, 1402
CviAII CATG 5 cut(s) 785, 982, 1073, 1183, 1190
CviQI GTAC 4 cut(s) 280, 594, 1273, 1402
DdeI CTNAG 1 cut(s) 531
DpnI GATC 5 cut(s) 123, 131, 495, 837, 876
DpnII GATC 5 cut(s) 121, 129, 493, 835, 874
DraIII CACNNNGTG 1 cut(s) 800
EaeI YGGCCR 2 cut(s) 3, 571
Eam1104I CTCTTC 3 cut(s) 222, 241, 462
EarI CTCTTC 3 cut(s) 222, 241, 462
EciI GGCGGA 1 cut(s) 69
Ecl136II GAGCTC 2 cut(s) 64, 148
Eco130I CCWWGG 1 cut(s) 924
Eco24I GRGCYC 3 cut(s) 66, 150, 189
Eco47I GGWCC 1 cut(s) 1331
Eco53kI GAGCTC 2 cut(s) 64, 148
Eco57I CTGAAG 3 cut(s) 179, 483, 645
EcoICRI GAGCTC 2 cut(s) 64, 148
EcoO109I RGGNCCY 1 cut(s) 1331
EcoRII CCWGG 2 cut(s) 568, 1333
EcoT14I CCWWGG 1 cut(s) 924
EcoT22I ATGCAT 2 cut(s) 610, 760
EcoT38I GRGCYC 3 cut(s) 66, 150, 189
ErhI CCWWGG 1 cut(s) 924
FaeI CATG 5 cut(s) 788, 985, 1076, 1186, 1193
FaqI GGGAC 2 cut(s) 293, 374
FatI CATG 5 cut(s) 784, 981, 1072, 1182, 1189
FauI CCCGC 3 cut(s) 135, 174, 856
FblI GTMKAC 2 cut(s) 767, 1325
Fnu4HI GCNGC 4 cut(s) 6, 75, 137, 140
FokI GGATG 4 cut(s) 274, 331, 704, 767
FriOI GRGCYC 3 cut(s) 66, 150, 189
Fsp4HI GCNGC 4 cut(s) 6, 75, 137, 140
FspBI CTAG 4 cut(s) 588, 900, 1281, 1299
GluI GCNGC 4 cut(s) 6, 75, 137, 140
GsaI CCCAGC 1 cut(s) 395
GsuI CTGGAG 2 cut(s) 73, 767
HaeIII GGCC 3 cut(s) 5, 573, 1436
HapII CCGG 3 cut(s) 104, 173, 1176
HgaI GACGC 2 cut(s) 89, 205
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 5 cut(s) 788, 985, 1076, 1186, 1193
HincII GTYRAC 4 cut(s) 109, 273, 444, 538
HindII GTYRAC 4 cut(s) 109, 273, 444, 538
HindIII AAGCTT 1 cut(s) 1005
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 3 cut(s) 104, 173, 1176
HphI GGTGA 2 cut(s) 1102, 1277
Hpy166II GTNNAC 9 cut(s) 109, 273, 444, 538, 768, 1093, 1141, 1275, 1326
Hpy188I TCNGA 6 cut(s) 38, 61, 385, 484, 490, 1029
Hpy8I GTNNAC 9 cut(s) 109, 273, 444, 538, 768, 1093, 1141, 1275, 1326
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 8 cut(s) 33, 357, 507, 718, 851, 1335, 1339, 1426
HpyCH4III ACNGT 4 cut(s) 270, 279, 1021, 1401
HpyCH4IV ACGT 1 cut(s) 630
HpyCH4V TGCA 6 cut(s) 265, 581, 608, 758, 1072, 1253
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 154, 169, 178, 1433
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 1 cut(s) 630
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 5 cut(s) 788, 985, 1076, 1186, 1193
KspAI GTTAAC 1 cut(s) 444
KspI CCGCGG 1 cut(s) 143
Kzo9I GATC 5 cut(s) 121, 129, 493, 835, 874
LmnI GCTCC 6 cut(s) 61, 69, 82, 145, 184, 1186
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 617, 745
MaeI CTAG 4 cut(s) 588, 900, 1281, 1299
MaeII ACGT 1 cut(s) 630
MaeIII GTNAC 2 cut(s) 523, 955
MalI GATC 5 cut(s) 123, 131, 495, 837, 876
MboI GATC 5 cut(s) 121, 129, 493, 835, 874
MboII GAAGA 9 cut(s) 227, 228, 239, 257, 449, 638, 1073, 1161, 1251
MhlI GDGCHC 3 cut(s) 66, 150, 189
MlsI TGGCCA 1 cut(s) 573
MluCI AATT 7 cut(s) 425, 474, 646, 778, 913, 989, 1373
MluNI TGGCCA 1 cut(s) 573
MlyI GAGTC 3 cut(s) 33, 80, 533
MmeI TCCRAC 2 cut(s) 372, 701
MnlI CCTC 8 cut(s) 30, 105, 147, 158, 403, 465, 688, 744
Mox20I TGGCCA 1 cut(s) 573
Mph1103I ATGCAT 2 cut(s) 610, 760
MscI TGGCCA 1 cut(s) 573
MseI TTAA 3 cut(s) 443, 473, 669
MslI CAYNNNNRTG 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 74, 142
MspI CCGG 3 cut(s) 104, 173, 1176
MspR9I CCNGG 3 cut(s) 570, 1177, 1335
MvaI CCWGG 2 cut(s) 570, 1335
MvnI CGCG 2 cut(s) 100, 142
MwoI GCNNNNNNNGC 5 cut(s) 145, 154, 169, 178, 1433
NciI CCSGG 1 cut(s) 1177
NdeII GATC 5 cut(s) 121, 129, 493, 835, 874
NlaIII CATG 5 cut(s) 788, 985, 1076, 1186, 1193
NlaIV GGNNCC 2 cut(s) 186, 1212
NmuCI GTSAC 1 cut(s) 955
NsiI ATGCAT 2 cut(s) 610, 760
NspI RCATGY 1 cut(s) 1193
NspV TTCGAA 2 cut(s) 54, 886
OliI CACNNNNGTG 1 cut(s) 116
PaeI GCATGC 1 cut(s) 1193
PagI TCATGA 1 cut(s) 784
PaqCI CACCTGC 1 cut(s) 691
PfeI GAWTC 8 cut(s) 56, 373, 479, 485, 883, 1024, 1218, 1240
PkrI GCNGC 4 cut(s) 7, 76, 138, 141
PleI GAGTC 3 cut(s) 33, 80, 533
PpsI GAGTC 3 cut(s) 33, 80, 533
PpuMI RGGWCCY 1 cut(s) 1331
PshAI GACNNNNGTC 1 cut(s) 90
Psp124BI GAGCTC 2 cut(s) 66, 150
Psp5II RGGWCCY 1 cut(s) 1331
Psp6I CCWGG 2 cut(s) 568, 1333
PspFI CCCAGC 1 cut(s) 391
PspGI CCWGG 2 cut(s) 568, 1333
PspN4I GGNNCC 2 cut(s) 186, 1212
PspPI GGNCC 1 cut(s) 1331
PspPPI RGGWCCY 1 cut(s) 1331
PstNI CAGNNNCTG 2 cut(s) 398, 1334
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 4 cut(s) 281, 595, 1274, 1403
RsaNI GTAC 4 cut(s) 280, 594, 1273, 1402
RseI CAYNNNNRTG 1 cut(s) 116
SacI GAGCTC 2 cut(s) 66, 150
SacII CCGCGG 1 cut(s) 143
SaqAI TTAA 3 cut(s) 443, 473, 669
SatI GCNGC 4 cut(s) 6, 75, 137, 140
Sau3AI GATC 5 cut(s) 121, 129, 493, 835, 874
Sau96I GGNCC 1 cut(s) 1331
SchI GAGTC 3 cut(s) 33, 80, 533
ScrFI CCNGG 3 cut(s) 570, 1177, 1335
SduI GDGCHC 3 cut(s) 66, 150, 189
SfaNI GCATC 2 cut(s) 617, 745
SfcI CTRYAG 2 cut(s) 292, 1393
Sfr303I CCGCGG 1 cut(s) 143
SfuI TTCGAA 2 cut(s) 54, 886
SgrBI CCGCGG 1 cut(s) 143
SinI GGWCC 1 cut(s) 1331
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SpeI ACTAGT 1 cut(s) 587
SphI GCATGC 1 cut(s) 1193
Sse9I AATT 7 cut(s) 425, 474, 646, 778, 913, 989, 1373
SspMI CTAG 4 cut(s) 588, 900, 1281, 1299
SstI GAGCTC 2 cut(s) 66, 150
StyD4I CCNGG 3 cut(s) 568, 1175, 1333
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 4 cut(s) 270, 279, 1021, 1401
TaiI ACGT 1 cut(s) 633
TaqI TCGA 7 cut(s) 42, 54, 124, 132, 225, 256, 886
TaqII GACCGA 1 cut(s) 1150
TasI AATT 7 cut(s) 425, 474, 646, 778, 913, 989, 1373
TatI WGTACW 1 cut(s) 1401
TauI GCSGC 3 cut(s) 8, 139, 142
TfiI GAWTC 8 cut(s) 56, 373, 479, 485, 883, 1024, 1218, 1240
Tru1I TTAA 3 cut(s) 443, 473, 669
Tru9I TTAA 3 cut(s) 443, 473, 669
TscAI CASTG 3 cut(s) 118, 805, 1026
TseFI GTSAC 1 cut(s) 955
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 955
TspDTI ATGAA 3 cut(s) 365, 773, 801
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 3 cut(s) 118, 805, 1026
VpaK11BI GGWCC 1 cut(s) 1331
XapI RAATTY 4 cut(s) 425, 646, 778, 913
XceI RCATGY 1 cut(s) 1193
XmiI GTMKAC 2 cut(s) 767, 1325
XspI CTAG 4 cut(s) 588, 900, 1281, 1299
Zsp2I ATGCAT 2 cut(s) 610, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.