Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Reverse (-)

12390197 .. 12390391

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCCAAGCAGAAGGGCCTCACTGTCGTCCAGCTCCTCCCGTCCTTCGTCGAGCCCTCCATGGCCCTCGCCCGGGTCCCCATCTCCAAATTCCCCAGTGGAGCCCTCGGGTATTTGTCCTCAGGTTGGGTCTTCTTCGAAGTCAACCTGGAGTTCCCGAGCCTCCATCTCCACTACTTCGTCCACGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

64

Amino Acids

7.12

Weight (kDa)

6.82

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	89
AfiI	CCNNNNNNNGG	3 cut(s)	72, 73, 126
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Ama87I	CYCGRG	3 cut(s)	72, 107, 157
AoxI	GGCC	3 cut(s)	3, 16, 63
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	16, 64, 76
AsuC2I	CCSGG	2 cut(s)	73, 74
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	3 cut(s)	72, 107, 157
AvaII	GGWCC	1 cut(s)	76
AxyI	CCTNAGG	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	57, 106
BbsI	GAAGAC	1 cut(s)	124
BccI	CCATC	2 cut(s)	89, 174
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	2 cut(s)	73, 74
Bme1390I	CCNGG	3 cut(s)	73, 74, 149
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	3 cut(s)	72, 107, 157
BmgT120I	GGNCC	3 cut(s)	16, 64, 76
BmiI	GGNNCC	3 cut(s)	77, 78, 103
BmrFI	CCNGG	3 cut(s)	73, 74, 149
BmrI	ACTGGG	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	138
BpuMI	CCSGG	2 cut(s)	73, 74
BsaJI	CCNNGG	3 cut(s)	60, 72, 106
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 73, 126
Bse1I	ACTGG	1 cut(s)	96
Bse21I	CCTNAGG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	60, 72, 106
BseLI	CCNNNNNNNGG	3 cut(s)	72, 73, 126
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	5, 18, 65
BsiHKCI	CYCGRG	3 cut(s)	72, 107, 157
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	72, 73, 126
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	5, 18, 65
BsoBI	CYCGRG	3 cut(s)	72, 107, 157
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	57, 106
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	3 cut(s)	5, 18, 65
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	3 cut(s)	77, 78, 103
BspT104I	TTCGAA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	60, 72, 106
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	25
BstBI	TTCGAA	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	121
BstDSI	CCRYGG	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	3 cut(s)	71, 72, 147
BstV2I	GAAGAC	1 cut(s)	124
Bsu36I	CCTNAGG	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	5, 18, 65
BtgI	CCRYGG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	21, 103
Cfr13I	GGNCC	3 cut(s)	16, 64, 76
Cfr9I	CCCGGG	1 cut(s)	72
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	5, 18, 34, 55, 65, 104, 162
CviKI_1	RGCY	7 cut(s)	5, 18, 34, 55, 65, 104, 162
DdeI	CTNAG	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	2 cut(s)	57, 106
Eco47I	GGWCC	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	121
Eco88I	CYCGRG	3 cut(s)	72, 107, 157
EcoO109I	RGGNCCY	2 cut(s)	16, 76
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	2 cut(s)	57, 106
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	1 cut(s)	62
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	60
FriOI	GRGCYC	2 cut(s)	57, 106
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	5, 18, 65
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	145, 184
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	2 cut(s)	145, 184
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	7, 55
HpyCH4III	ACNGT	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	64
KflI	GGGWCCC	1 cut(s)	76
LmnI	GCTCC	2 cut(s)	39, 101
LpnPI	CCDG	6 cut(s)	44, 86, 108, 109, 134, 161
MboII	GAAGA	2 cut(s)	124, 127
MhlI	GDGCHC	2 cut(s)	57, 106
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	89
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	29, 47, 67, 77, 116, 130, 173
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	73, 74, 149
MvaI	CCWGG	1 cut(s)	149
NciI	CCSGG	2 cut(s)	73, 74
NcoI	CCATGG	1 cut(s)	60
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	3 cut(s)	77, 78, 103
NspV	TTCGAA	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	77, 78, 103
PspPI	GGNCC	3 cut(s)	16, 64, 76
PspPPI	RGGWCCY	1 cut(s)	76
Sau96I	GGNCC	3 cut(s)	16, 64, 76
ScrFI	CCNGG	3 cut(s)	73, 74, 149
SduI	GDGCHC	2 cut(s)	57, 106
SetI	ASST	3 cut(s)	36, 127, 150
SfuI	TTCGAA	1 cut(s)	138
SinI	GGWCC	1 cut(s)	76
SmaI	CCCGGG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	71, 72, 147
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	51, 138
TasI	AATT	1 cut(s)	89
TscAI	CASTG	2 cut(s)	28, 103
TspMI	CCCGGG	1 cut(s)	72
TspRI	CASTG	2 cut(s)	28, 103
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	89
XmaI	CCCGGG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.