Rroxscaffold_4G00312180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013761
Physical Location & Seq
Forward (+)
35000106 .. 35000351
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312180.1

Sequence Viewer

Length: 246 bp
ATGCAAGTTTTCCGCCCGACCCGACCCGGACCCGGCCGATCCGACCCGACTTTTCCGGCCAATTCCGCCACCTCCGCCGTGAAACTTCGTCGCCAGGTCGCCTCCTCCTTCCGATCGTCTCTGTGGTGGTCGCCGCCGACGATTCGAGCTCACGGTGGTGCAGCAAGGCGGCGCAGTTCTACGTTTTCCGACCCGGCCGGAAATTGCAGTTCCGACGTCGGCACGACTTTGGGTTTCCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.62

Weight (kDa)

12.0

Isoelectric Point (pI)

77.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AciI CCGC 5 cut(s) 13, 66, 75, 134, 169
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 3 cut(s) 34, 57, 195
AcyI GRCGYC 1 cut(s) 216
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 93
AleI CACNNNNGTG 1 cut(s) 156
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 33
AoxI GGCC 3 cut(s) 34, 57, 195
ApeKI GCWGC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 3 cut(s) 27, 33, 194
AvaII GGWCC 1 cut(s) 29
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 3 cut(s) 27, 33, 194
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 3 cut(s) 134, 162, 170
BlsI GCNGC 3 cut(s) 135, 163, 171
Bme1390I CCNGG 4 cut(s) 27, 33, 95, 194
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 4 cut(s) 27, 33, 95, 194
BpuMI CCSGG 3 cut(s) 27, 33, 194
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 94
BseX3I CGGCCG 2 cut(s) 34, 195
BseXI GCAGC 1 cut(s) 173
BsgI GTGCAG 1 cut(s) 180
Bsh1285I CGRYCG 3 cut(s) 37, 116, 198
BshFI GGCC 3 cut(s) 36, 59, 197
BsiEI CGRYCG 3 cut(s) 37, 116, 198
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 5 cut(s) 27, 33, 56, 194, 198
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 3 cut(s) 36, 59, 197
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 38, 113
BspACI CCGC 5 cut(s) 13, 66, 75, 134, 169
BspANI GGCC 3 cut(s) 36, 59, 197
BspLI GGNNCC 1 cut(s) 31
BspPI GGATC 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 38, 113
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 216
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 41, 116
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 38, 113
BstMCI CGRYCG 3 cut(s) 37, 116, 198
BstMWI GCNNNNNNNGC 2 cut(s) 65, 74
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 4 cut(s) 25, 31, 93, 192
BstV1I GCAGC 1 cut(s) 173
BstZI CGGCCG 2 cut(s) 34, 195
BsuRI GGCC 3 cut(s) 36, 59, 197
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 29
CviJI RGCY 4 cut(s) 36, 59, 149, 197
CviKI_1 RGCY 4 cut(s) 36, 59, 149, 197
DpnI GATC 2 cut(s) 40, 115
DpnII GATC 2 cut(s) 38, 113
EaeI YGGCCR 3 cut(s) 34, 57, 195
EagI CGGCCG 2 cut(s) 34, 195
EciI GGCGGA 2 cut(s) 55, 64
Ecl136II GAGCTC 1 cut(s) 149
EclXI CGGCCG 2 cut(s) 34, 195
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 29
Eco52I CGGCCG 2 cut(s) 34, 195
Eco53kI GAGCTC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 134, 162, 170
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 3 cut(s) 134, 162, 170
GlaI GCGC 1 cut(s) 173
GluI GCNGC 3 cut(s) 134, 162, 170
HaeIII GGCC 3 cut(s) 36, 59, 197
HapII CCGG 5 cut(s) 27, 33, 56, 194, 198
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 216
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 1 cut(s) 142
HpaII CCGG 5 cut(s) 27, 33, 56, 194, 198
Hpy188I TCNGA 4 cut(s) 43, 113, 190, 214
Hpy99I CGWCG 4 cut(s) 93, 142, 218, 221
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 182, 216
HpyCH4V TGCA 3 cut(s) 4, 161, 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 74
HpySE526I ACGT 2 cut(s) 182, 216
Hsp92I GRCGYC 1 cut(s) 216
HspAI GCGC 1 cut(s) 172
Kzo9I GATC 2 cut(s) 38, 113
LpnPI CCDG 7 cut(s) 40, 46, 69, 80, 107, 207, 211
Lsp1109I GCAGC 1 cut(s) 173
MaeII ACGT 2 cut(s) 182, 216
MalI GATC 2 cut(s) 40, 115
MboI GATC 2 cut(s) 38, 113
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 2 cut(s) 61, 202
MmeI TCCRAC 3 cut(s) 66, 213, 237
MnlI CCTC 3 cut(s) 82, 112, 115
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 5 cut(s) 27, 33, 56, 194, 198
MspR9I CCNGG 4 cut(s) 27, 33, 95, 194
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 65, 74
NciI CCSGG 3 cut(s) 27, 33, 194
NdeII GATC 2 cut(s) 38, 113
NlaIV GGNNCC 1 cut(s) 31
OliI CACNNNNGTG 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 135, 163, 171
Ple19I CGATCG 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 29
PvuI CGATCG 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 151
SatI GCNGC 3 cut(s) 134, 162, 170
Sau3AI GATC 2 cut(s) 38, 113
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 4 cut(s) 27, 33, 95, 194
SduI GDGCHC 1 cut(s) 151
SetI ASST 5 cut(s) 74, 99, 151, 185, 219
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 2 cut(s) 61, 202
SsiI CCGC 5 cut(s) 13, 66, 75, 134, 169
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 4 cut(s) 25, 31, 93, 192
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 2 cut(s) 185, 219
TaqI TCGA 1 cut(s) 145
TasI AATT 2 cut(s) 61, 202
TauI GCSGC 2 cut(s) 136, 172
TfiI GAWTC 1 cut(s) 142
TseI GCWGC 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 29
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.