Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010019.1

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Forward (+)

18945 .. 19454

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010019.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggaccaacccagattcgtaatcgaagcctcagaggccgagtcaattgccaagaagaagggcctcactgtcgtccagctcctcccgtccttcgtcgagcatgacaaggccctctccctggtcctcatctccaaattccccgtcggagccctcgggtacgggtcctcaagttgggtcttctttgaaccccgcctcgaatacgtcgttgtctccaccgacccctactgccattgccgccaattcttccaagaaatccgccgcgcccaagatatcaagatcctcatcacctctgctgaggccagagaagacgacggcgacaaaaatgacacgtcgttggcaaattcaaccccctcatcccccaccggttcagccctaaagacatcctcggcaaggacgtgcccgtggttattgagaaaacactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

140

Amino Acids

15.56

Weight (kDa)

6.82

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	4 cut(s)	190, 235, 256, 259
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	2 cut(s)	134, 340
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	118, 171, 390
AflIII	ACRYGT	1 cut(s)	327
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	185, 345
AjiI	CACGTC	2 cut(s)	330, 396
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	4 cut(s)	36, 61, 108, 297
ApoI	RAATTY	2 cut(s)	134, 340
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AsiGI	ACCGGT	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	5 cut(s)	4, 61, 109, 121, 162
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	3 cut(s)	4, 121, 162
BaeGI	GKGCMC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	169, 312
BbvCI	CCTCAGC	1 cut(s)	294
BceAI	ACGGC	1 cut(s)	328
BcgI	CGANNNNNNTGC	2 cut(s)	29, 63
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	2 cut(s)	235, 259
BlsI	GCNGC	2 cut(s)	236, 260
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	3 cut(s)	4, 121, 162
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	2 cut(s)	330, 396
BmgT120I	GGNCC	5 cut(s)	4, 61, 109, 121, 162
BmiI	GGNNCC	2 cut(s)	148, 163
BmrFI	CCNGG	1 cut(s)	119
BpiI	GAAGAC	2 cut(s)	169, 312
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	4 cut(s)	117, 151, 384, 401
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 171, 390
Bse118I	RCCGGY	1 cut(s)	362
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	4 cut(s)	117, 151, 384, 401
BseGI	GGATG	2 cut(s)	353, 380
BseJI	GATNNNNATC	1 cut(s)	281
BseLI	CCNNNNNNNGG	3 cut(s)	118, 171, 390
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	45, 285
BseRI	GAGGAG	1 cut(s)	71
BseSI	GKGCMC	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	4 cut(s)	38, 63, 110, 299
BshTI	ACCGGT	1 cut(s)	362
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	3 cut(s)	118, 171, 390
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	4 cut(s)	38, 63, 110, 299
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	151, 401
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	4 cut(s)	190, 235, 256, 259
BspANI	GGCC	4 cut(s)	38, 63, 110, 299
BspCNI	CTCAG	2 cut(s)	44, 286
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	148, 163
BspPI	GGATC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	4 cut(s)	117, 151, 384, 401
BssMI	GATC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	31, 294
BstDSI	CCRYGG	1 cut(s)	401
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	353, 380
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 234
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	261
BstV2I	GAAGAC	2 cut(s)	169, 312
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	4 cut(s)	38, 63, 110, 299
BtgI	CCRYGG	1 cut(s)	401
BtrI	CACGTC	2 cut(s)	330, 396
BtsCI	GGATG	2 cut(s)	353, 380
BtsIMutI	CAGTG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	5 cut(s)	4, 61, 109, 121, 162
Csp6I	GTAC	1 cut(s)	157
CspAI	ACCGGT	1 cut(s)	362
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	8 cut(s)	29, 38, 63, 79, 110, 149, 299, 371
CviKI_1	RGCY	8 cut(s)	29, 38, 63, 79, 110, 149, 299, 371
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	31, 294
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	3 cut(s)	4, 121, 162
Eco88I	CYCGRG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoO109I	RGGNCCY	3 cut(s)	61, 109, 162
EcoRII	CCWGG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	1 cut(s)	104
FaiI	YATR	1 cut(s)	102
FatI	CATG	1 cut(s)	100
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	235, 259
FokI	GGATG	2 cut(s)	340, 367
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	235, 259
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	2 cut(s)	235, 259
HaeIII	GGCC	4 cut(s)	38, 63, 110, 299
HapII	CCGG	1 cut(s)	363
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	2 cut(s)	15, 41
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	34, 146
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	5 cut(s)	98, 146, 206, 314, 334
HpyAV	CCTTC	2 cut(s)	52, 100
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	3 cut(s)	201, 329, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 234
HpyF3I	CTNAG	2 cut(s)	31, 294
HpySE526I	ACGT	3 cut(s)	201, 329, 395
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	2 cut(s)	84, 146
LpnPI	CCDG	6 cut(s)	25, 89, 104, 131, 313, 376
MaeII	ACGT	3 cut(s)	201, 329, 395
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	4 cut(s)	67, 169, 235, 317
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	151, 401
MluCI	AATT	4 cut(s)	45, 134, 239, 340
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	124
MspI	CCGG	1 cut(s)	363
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	2 cut(s)	35, 234
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	148, 163
NmeAIII	GCCGAG	2 cut(s)	64, 365
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 392
PfeI	GAWTC	1 cut(s)	15
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	236, 260
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	148, 163
PspPI	GGNCC	5 cut(s)	4, 61, 109, 121, 162
PspPPI	RGGWCCY	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	2 cut(s)	235, 259
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	5 cut(s)	4, 61, 109, 121, 162
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	151, 401
SetI	ASST	5 cut(s)	81, 204, 290, 332, 398
SinI	GGWCC	3 cut(s)	4, 121, 162
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	4 cut(s)	45, 134, 239, 340
SsiI	CCGC	4 cut(s)	190, 235, 256, 259
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	3 cut(s)	204, 332, 398
TaqI	TCGA	3 cut(s)	24, 96, 195
TasI	AATT	4 cut(s)	45, 134, 239, 340
TauI	GCSGC	2 cut(s)	237, 261
TfiI	GAWTC	1 cut(s)	15
TscAI	CASTG	1 cut(s)	73
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	3 cut(s)	4, 121, 162
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	2 cut(s)	134, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.