Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Forward (+)

6015285 .. 6015747

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG077600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGACCGACCCAGATTCGTAATTGAAGCCTCGGAGGCGGAGTCAGCGGCCAAGCAGAAGGGCCTCACCGTCGTCCAGCTCCTCCCGTCCATCGTCAAGTCCGCCAAGGACCTCGCCCGGGTCCCCATCTCCAAACTCCCCGTCGGAGCCTTCGGGTACGGGTCCTCGGGTCGGGTCTGTTGGGGGTCAACCTCGAGTTCCCGGGCCTCCCCCTCCACTACTCCGTCCACGCCGAGTAGTTCCTCGTCACCAATCTCTCGATCCAGTCGGAGCCCCGCCTCGAATACGTCGCCGTCTCGGCCGCCAATTCTTTCAGGACATCAAGATCGTCATCACCTCCGCCGACAAAAAACAGGTCGAGTGCAACATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

124

Amino Acids

13.12

Weight (kDa)

11.56

Isoelectric Point (pI)

83.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	38, 47, 102, 276, 302, 340
AclWI	GGATC	1 cut(s)	255
AcoI	YGGCCR	2 cut(s)	48, 299
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	118, 171
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	255
Ama87I	CYCGRG	4 cut(s)	117, 166, 193, 201
AoxI	GGCC	4 cut(s)	48, 61, 204, 299
ArsI	GACNNNNNNTTYG	4 cut(s)	126, 158, 340, 372
AspS9I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 204
AsuC2I	CCSGG	4 cut(s)	118, 119, 202, 203
AsuHPI	GGTGA	3 cut(s)	58, 240, 326
AvaI	CYCGRG	4 cut(s)	117, 166, 193, 201
AvaII	GGWCC	4 cut(s)	4, 109, 121, 162
BanII	GRGCYC	1 cut(s)	275
BccI	CCATC	2 cut(s)	98, 134
BceAI	ACGGC	1 cut(s)	277
BcnI	CCSGG	4 cut(s)	118, 119, 202, 203
BcoDI	GTCTC	1 cut(s)	300
BglI	GCCNNNNNGGC	2 cut(s)	35, 298
BisI	GCNGC	2 cut(s)	48, 302
BlsI	GCNGC	2 cut(s)	49, 303
Bme1390I	CCNGG	4 cut(s)	118, 119, 202, 203
Bme18I	GGWCC	4 cut(s)	4, 109, 121, 162
BmeT110I	CYCGRG	4 cut(s)	117, 166, 193, 201
BmgT120I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 204
BmiI	GGNNCC	5 cut(s)	122, 123, 148, 163, 272
BmrFI	CCNGG	4 cut(s)	118, 119, 202, 203
BpuMI	CCSGG	4 cut(s)	118, 119, 202, 203
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	5 cut(s)	30, 105, 117, 165, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 171
Bse1I	ACTGG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	330
BseDI	CCNNGG	5 cut(s)	30, 105, 117, 165, 201
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	118, 171
BseNI	ACTGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	71
BseX3I	CGGCCG	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	302
BshFI	GGCC	4 cut(s)	50, 63, 206, 301
BsiEI	CGRYCG	1 cut(s)	302
BsiHKCI	CYCGRG	4 cut(s)	117, 166, 193, 201
BsiSI	CCGG	2 cut(s)	118, 202
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	118, 171
BsmAI	GTCTC	1 cut(s)	300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	4 cut(s)	50, 63, 206, 301
BsoBI	CYCGRG	4 cut(s)	117, 166, 193, 201
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	260, 325
BspACI	CCGC	6 cut(s)	38, 47, 102, 276, 302, 340
BspANI	GGCC	4 cut(s)	50, 63, 206, 301
BspLI	GGNNCC	5 cut(s)	122, 123, 148, 163, 272
BspPI	GGATC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	5 cut(s)	30, 105, 117, 165, 201
BssMI	GATC	2 cut(s)	260, 325
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	70
BstKTI	GATC	2 cut(s)	263, 328
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	2 cut(s)	260, 325
BstMCI	CGRYCG	1 cut(s)	302
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 298
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	4 cut(s)	116, 117, 200, 201
BstZI	CGGCCG	1 cut(s)	299
BsuRI	GGCC	4 cut(s)	50, 63, 206, 301
Cfr13I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 204
Cfr9I	CCCGGG	2 cut(s)	117, 201
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	8 cut(s)	29, 50, 63, 79, 149, 206, 273, 301
CviKI_1	RGCY	8 cut(s)	29, 50, 63, 79, 149, 206, 273, 301
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	2 cut(s)	262, 327
DpnII	GATC	2 cut(s)	260, 325
EaeI	YGGCCR	2 cut(s)	48, 299
EagI	CGGCCG	1 cut(s)	299
EciI	GGCGGA	3 cut(s)	53, 91, 329
EclXI	CGGCCG	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	275
Eco47I	GGWCC	4 cut(s)	4, 109, 121, 162
Eco52I	CGGCCG	1 cut(s)	299
Eco88I	CYCGRG	4 cut(s)	117, 166, 193, 201
EcoO109I	RGGNCCY	4 cut(s)	61, 109, 121, 162
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	1 cut(s)	371
FaiI	YATR	2 cut(s)	369, 373
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	1 cut(s)	367
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	48, 302
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	48, 302
GluI	GCNGC	2 cut(s)	48, 302
HaeIII	GGCC	4 cut(s)	50, 63, 206, 301
HapII	CCGG	2 cut(s)	118, 202
Hin1II	CATG	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	15, 41
HpaII	CCGG	2 cut(s)	118, 202
HphI	GGTGA	3 cut(s)	58, 240, 326
Hpy166II	GTNNAC	2 cut(s)	189, 228
Hpy188I	TCNGA	3 cut(s)	34, 146, 270
Hpy188III	TCNNGA	3 cut(s)	258, 315, 323
Hpy8I	GTNNAC	2 cut(s)	189, 228
Hpy99I	CGWCG	3 cut(s)	74, 146, 292
HpyAV	CCTTC	2 cut(s)	52, 160
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	364, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 298
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	1 cut(s)	371
KflI	GGGWCCC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	260, 325
LmnI	GCTCC	3 cut(s)	84, 146, 270
LpnPI	CCDG	7 cut(s)	25, 89, 131, 215, 277, 300, 339
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	262, 327
MboI	GATC	2 cut(s)	260, 325
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	2 cut(s)	21, 306
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	124, 248
Mph1103I	ATGCAT	1 cut(s)	373
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	118, 202
MspR9I	CCNGG	4 cut(s)	118, 119, 202, 203
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 298
NciI	CCSGG	4 cut(s)	118, 119, 202, 203
NdeII	GATC	2 cut(s)	260, 325
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	5 cut(s)	122, 123, 148, 163, 272
NmeAIII	GCCGAG	2 cut(s)	258, 277
NmuCI	GTSAC	1 cut(s)	246
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	49, 303
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	3 cut(s)	109, 121, 162
Psp5II	RGGWCCY	3 cut(s)	109, 121, 162
PspN4I	GGNNCC	5 cut(s)	122, 123, 148, 163, 272
PspPI	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 204
PspPPI	RGGWCCY	3 cut(s)	109, 121, 162
PspXI	VCTCGAGB	1 cut(s)	193
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	2 cut(s)	48, 302
Sau3AI	GATC	2 cut(s)	260, 325
Sau96I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 204
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	4 cut(s)	118, 119, 202, 203
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	6 cut(s)	81, 114, 194, 290, 339, 358
Sfr274I	CTCGAG	1 cut(s)	193
SinI	GGWCC	4 cut(s)	4, 109, 121, 162
SlaI	CTCGAG	1 cut(s)	193
SmaI	CCCGGG	2 cut(s)	119, 203
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	2 cut(s)	21, 306
SsiI	CCGC	6 cut(s)	38, 47, 102, 276, 302, 340
StyD4I	CCNGG	4 cut(s)	116, 117, 200, 201
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	194, 259, 281, 358
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	21, 306
TauI	GCSGC	2 cut(s)	50, 304
TfiI	GAWTC	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	213
TspMI	CCCGGG	2 cut(s)	117, 201
VpaK11BI	GGWCC	4 cut(s)	4, 109, 121, 162
XceI	RCATGY	1 cut(s)	371
XhoI	CTCGAG	1 cut(s)	193
XmaI	CCCGGG	2 cut(s)	117, 201
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.