RchiOBHm_Chr6g0266291

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013761
Physical Location & Seq
Reverse (-)
22496834 .. 22499862
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23881

Sequence Viewer

Length: 636 bp
ATGGTTGTTGGACGGTTTCGTGGCTCGTGGACGGAGCGGAAGTGTTTCGGACGAATTAATTATTTGAAAAAAACTTACTATTTTCATTTGTTTCCTTTTTCGGAAACCATTTCACTTTCTCTCTCTTCTCTCTCGGCTGCTACCTTCAAAATCGAAATAATTAGAGTAACCCGACCCGAACCCAGTATTCCGACCCGGTCGGAACTTGCATCTCCGGCGACCTCTTCCGGTGAAACCAGCCCAGAACAACTCGCCTCCTTGCTCCGGTCGTCTCTGTGGTGGCCTCTTACGACGATTCTCCTTCGCGGTGGCGCTGCAAGGCGACACAGGTTGTGGAAATCGGACCCGACAGGAAATCGTAGCTCCGGCGACGGCACGGCTTCAAGTTTCCTTCCTTGGCTTCGTGGGGGTCGTCTGAGTCGATCTATGGTGTTTGTTTTGATCGGTTTACGTGGAAATCGGTTCAACTTAGTTGGGATTACTGTTCACACCTTGTACTTGACGAAGTATTTGGACGGCTATTTTGTGGGTTGGCAGCATTGTTCTGTATTGAAGACGCAGCAGGAGTTTCGAGACCTGAGAATGCATTCTTATTTCCCATATATTCATGAAACCTACTCCTTTAGTCATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.18

Weight (kDa)

10.31

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 37
AccII CGCG 1 cut(s) 306
AciI CCGC 2 cut(s) 37, 306
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 5 cut(s) 67, 148, 384, 466, 553
AluBI AGCT 1 cut(s) 363
AluI AGCT 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 276, 567
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 4 cut(s) 137, 314, 535, 559
ArsI GACNNNNNNTTYG 4 cut(s) 493, 506, 525, 538
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 2 cut(s) 44, 586
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 343
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 343
BauI CACGAG 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 560
BbvI GCAGC 4 cut(s) 124, 301, 547, 571
BceAI ACGGC 3 cut(s) 388, 393, 532
BcgI CGANNNNNNTGC 2 cut(s) 551, 585
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 276, 567
BfoI RGCGCY 1 cut(s) 315
BisI GCNGC 4 cut(s) 138, 315, 536, 560
BlsI GCNGC 4 cut(s) 139, 316, 537, 561
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 395
BsaWI WCCGGW 2 cut(s) 227, 264
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 407, 569
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 4 cut(s) 124, 301, 547, 571
Bsh1236I CGCG 1 cut(s) 306
Bsh1285I CGRYCG 2 cut(s) 200, 269
BshFI GGCC 1 cut(s) 283
BsiEI CGRYCG 2 cut(s) 200, 269
BsiSI CCGG 5 cut(s) 196, 215, 228, 265, 366
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 276, 567
BsmBI CGTCTC 1 cut(s) 276
BsmI GAATGC 2 cut(s) 586, 588
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 567
Bsp143I GATC 2 cut(s) 422, 441
BspACI CCGC 2 cut(s) 37, 306
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 408, 570
BspFNI CGCG 1 cut(s) 306
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 345
BspTNI GGTCTC 1 cut(s) 567
BsrBI CCGCTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 2 cut(s) 422, 441
BssSI CACGAG 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 395
Bst2BI CACGAG 1 cut(s) 25
Bst4CI ACNGT 2 cut(s) 15, 484
Bst6I CTCTTC 2 cut(s) 130, 229
BstBAI YACGTR 1 cut(s) 452
BstDEI CTNAG 3 cut(s) 416, 469, 578
BstFNI CGCG 1 cut(s) 306
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 2 cut(s) 425, 444
BstMAI GTCTC 2 cut(s) 276, 567
BstMBI GATC 2 cut(s) 422, 441
BstMCI CGRYCG 2 cut(s) 200, 269
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 194
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 4 cut(s) 124, 301, 547, 571
BstV2I GAAGAC 1 cut(s) 560
BsuRI GGCC 1 cut(s) 283
CciI TCATGA 1 cut(s) 607
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 343
CseI GACGC 1 cut(s) 565
Csp6I GTAC 1 cut(s) 496
CviAII CATG 1 cut(s) 608
CviJI RGCY 8 cut(s) 24, 137, 240, 283, 363, 380, 400, 519
CviKI_1 RGCY 8 cut(s) 24, 137, 240, 283, 363, 380, 400, 519
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 3 cut(s) 416, 469, 578
DpnI GATC 2 cut(s) 424, 443
DpnII GATC 2 cut(s) 422, 441
Eam1104I CTCTTC 2 cut(s) 130, 229
EarI CTCTTC 2 cut(s) 130, 229
Eco130I CCWWGG 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 395
EcoT22I ATGCAT 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 395
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 1 cut(s) 611
FaiI YATR 7 cut(s) 428, 601, 603, 609, 630, 632, 634
FatI CATG 1 cut(s) 607
Fnu4HI GCNGC 4 cut(s) 138, 315, 536, 560
Fsp4HI GCNGC 4 cut(s) 138, 315, 536, 560
GlaI GCGC 1 cut(s) 313
GluI GCNGC 4 cut(s) 138, 315, 536, 560
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 1 cut(s) 283
HapII CCGG 5 cut(s) 196, 215, 228, 265, 366
HgaI GACGC 1 cut(s) 565
HhaI GCGC 1 cut(s) 314
Hin1II CATG 1 cut(s) 611
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 2 cut(s) 295, 418
HpaII CCGG 5 cut(s) 196, 215, 228, 265, 366
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 3 cut(s) 30, 449, 487
Hpy188I TCNGA 6 cut(s) 50, 103, 192, 202, 343, 417
Hpy188III TCNNGA 2 cut(s) 572, 608
Hpy8I GTNNAC 3 cut(s) 30, 449, 487
Hpy99I CGWCG 2 cut(s) 295, 374
HpyAV CCTTC 3 cut(s) 154, 311, 401
HpyCH4III ACNGT 2 cut(s) 15, 484
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 3 cut(s) 209, 317, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 416, 469, 578
HpySE526I ACGT 1 cut(s) 451
Hsp92II CATG 1 cut(s) 611
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 422, 441
LmnI GCTCC 3 cut(s) 34, 267, 368
Lsp1109I GCAGC 4 cut(s) 124, 301, 547, 571
LweI GCATC 1 cut(s) 218
MaeII ACGT 1 cut(s) 451
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 424, 443
MbiI CCGCTC 1 cut(s) 37
MboI GATC 2 cut(s) 422, 441
MboII GAAGA 3 cut(s) 117, 216, 565
MluCI AATT 3 cut(s) 54, 58, 159
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 2 cut(s) 180, 215
MnlI CCTC 3 cut(s) 232, 265, 294
Mph1103I ATGCAT 1 cut(s) 588
MroXI GAANNNNTTC 2 cut(s) 44, 586
MseI TTAA 1 cut(s) 57
MspI CCGG 5 cut(s) 196, 215, 228, 265, 366
MspR9I CCNGG 1 cut(s) 196
Mva1269I GAATGC 2 cut(s) 586, 588
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 196
NdeII GATC 2 cut(s) 422, 441
NlaIII CATG 1 cut(s) 611
NlaIV GGNNCC 1 cut(s) 345
NmeAIII GCCGAG 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 588
PagI TCATGA 1 cut(s) 607
PcsI WCGNNNNNNNCGW 2 cut(s) 409, 418
PctI GAATGC 2 cut(s) 586, 588
PdmI GAANNNNTTC 2 cut(s) 44, 586
PfeI GAWTC 1 cut(s) 295
PflFI GACNNNGTC 1 cut(s) 196
PkrI GCNGC 4 cut(s) 139, 316, 537, 561
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
Ppu21I YACGTR 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 196
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 4 cut(s) 138, 315, 536, 560
Sau3AI GATC 2 cut(s) 422, 441
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 196
SetI ASST 8 cut(s) 146, 224, 332, 365, 454, 494, 579, 617
SfaNI GCATC 1 cut(s) 218
SinI GGWCC 1 cut(s) 343
Sse9I AATT 3 cut(s) 54, 58, 159
SsiI CCGC 2 cut(s) 37, 306
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 2 cut(s) 15, 484
TaiI ACGT 1 cut(s) 454
TaqI TCGA 3 cut(s) 153, 421, 571
TasI AATT 3 cut(s) 54, 58, 159
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 4 cut(s) 137, 314, 535, 559
TspDTI ATGAA 3 cut(s) 74, 596, 624
TspGWI ACGGA 1 cut(s) 47
Tth111I GACNNNGTC 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 343
VspI ATTAAT 1 cut(s) 57
XmnI GAANNNNTTC 2 cut(s) 44, 586
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.