Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002132.1

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Forward (+)

85817 .. 90539

Gene Structure 4723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002132.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggccaagcagaagggcctcactgtcatccagctcctctcgtccttcgtctcgcccgccatggccctcgcccgggtccccatctccaagttccccggcggagccctcgggtacgggtcctcgggttgggtcttcttcaaagtcaacctggagttccctagcctccccctccactacttcgtccacgccgaacagttcctcatcaccaatctctcgatccacaacagtcctaaccaaaagcctcctgtctccctttccaccgcagggcagcaaatggtcttgcaccccagttgcaaagatttgaagcttatcgagaaaagatgcctactagatagagttttgggagttcagtttgttgagcagataaactgggttcgcaaaactttgggttcgattaaaggagggaaagatggcacaaagcctgttgcagagtccatggcccattatgaagctcggcctgttcgggtgcccaaatcactttttcacctagcgttgatgaaactaaagcctgaggataaatatgggtgtccaaatcactttaaagctcgagcccgattaatttgcagcctaaagcccattccaaatcacaaggcccactgcaaatctcagtacatcggagtcgaagattttcgactgacccgacccggacccggcattccgacccggtcggaactcacagctccggcgacctcttccggtgaaaccaacccagaacgattcgcctccttgctccggtcgtctctgtggtggtctctatcgacgattctccttcacggcggcgctgcaagtcggctcagattgaggaaatcggacccggccggaaatccttactccgacgtcggcaaggcttcgagttttcttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

288

Amino Acids

31.63

Weight (kDa)

10.02

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	4 cut(s)	57, 99, 261, 777
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	2 cut(s)	3, 816
AcyI	GRCGYC	1 cut(s)	837
AfaI	GTAC	2 cut(s)	113, 611
AfiI	CCNNNNNNNGG	6 cut(s)	72, 73, 126, 264, 650, 732
AgsI	TTSAA	2 cut(s)	139, 304
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	5 cut(s)	34, 307, 452, 545, 680
AluI	AGCT	5 cut(s)	34, 307, 452, 545, 680
Alw26I	GTCTC	4 cut(s)	55, 253, 744, 756
AlwI	GGATC	1 cut(s)	211
Ama87I	CYCGRG	4 cut(s)	72, 107, 121, 546
AoxI	GGCC	7 cut(s)	3, 16, 63, 438, 455, 591, 816
ApeKI	GCWGC	3 cut(s)	268, 564, 782
AseI	ATTAAT	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	8 cut(s)	16, 64, 76, 117, 439, 592, 647, 811
AsuC2I	CCSGG	7 cut(s)	73, 74, 96, 645, 651, 664, 815
AsuHPI	GGTGA	3 cut(s)	196, 476, 710
AvaI	CYCGRG	4 cut(s)	72, 107, 121, 546
AvaII	GGWCC	4 cut(s)	76, 117, 647, 811
AxyI	CCTNAGG	1 cut(s)	510
BaeGI	GKGCMC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	466
BanII	GRGCYC	2 cut(s)	106, 553
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	3 cut(s)	280, 576, 769
BccI	CCATC	2 cut(s)	89, 404
BceAI	ACGGC	1 cut(s)	790
BcgI	CGANNNNNNTGC	2 cut(s)	543, 577
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	7 cut(s)	73, 74, 96, 645, 651, 664, 815
BcoDI	GTCTC	4 cut(s)	55, 253, 744, 756
BfaI	CTAG	3 cut(s)	159, 329, 488
BfoI	RGCGCY	1 cut(s)	783
BisI	GCNGC	4 cut(s)	269, 565, 778, 783
BlsI	GCNGC	4 cut(s)	270, 566, 779, 784
Bme1390I	CCNGG	8 cut(s)	73, 74, 96, 149, 645, 651, 664, 815
Bme18I	GGWCC	4 cut(s)	76, 117, 647, 811
BmeT110I	CYCGRG	4 cut(s)	72, 107, 121, 546
BmgT120I	GGNCC	8 cut(s)	16, 64, 76, 117, 439, 592, 647, 811
BmiI	GGNNCC	7 cut(s)	77, 78, 103, 118, 468, 649, 813
BmrFI	CCNGG	8 cut(s)	73, 74, 96, 149, 645, 651, 664, 815
BmrI	ACTGGG	2 cut(s)	282, 379
BmsI	GCATC	1 cut(s)	311
BmuI	ACTGGG	2 cut(s)	282, 379
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	170
BpuMI	CCSGG	7 cut(s)	73, 74, 96, 645, 651, 664, 815
BsaHI	GRCGYC	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	756
BsaJI	CCNNGG	6 cut(s)	60, 72, 94, 106, 120, 435
BsaWI	WCCGGW	2 cut(s)	695, 732
Bsc4I	CCNNNNNNNGG	6 cut(s)	72, 73, 126, 264, 650, 732
Bse1I	ACTGG	2 cut(s)	288, 374
Bse21I	CCTNAGG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	6 cut(s)	60, 72, 94, 106, 120, 435
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	6 cut(s)	72, 73, 126, 264, 650, 732
BseMII	CTCAG	3 cut(s)	501, 620, 808
BseNI	ACTGG	2 cut(s)	288, 374
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	471
BseX3I	CGGCCG	1 cut(s)	816
BseXI	GCAGC	3 cut(s)	280, 576, 769
Bsh1285I	CGRYCG	3 cut(s)	668, 737, 819
BshFI	GGCC	7 cut(s)	5, 18, 65, 440, 457, 593, 818
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	3 cut(s)	668, 737, 819
BsiHKCI	CYCGRG	4 cut(s)	72, 107, 121, 546
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	6 cut(s)	72, 73, 126, 264, 650, 732
BsmAI	GTCTC	4 cut(s)	55, 253, 744, 756
BsmBI	CGTCTC	2 cut(s)	55, 744
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	654
BsnI	GGCC	7 cut(s)	5, 18, 65, 440, 457, 593, 818
Bso31I	GGTCTC	1 cut(s)	756
BsoBI	CYCGRG	4 cut(s)	72, 107, 121, 546
Bsp1286I	GDGCHC	3 cut(s)	106, 471, 553
Bsp143I	GATC	1 cut(s)	216
Bsp19I	CCATGG	2 cut(s)	60, 435
BspACI	CCGC	4 cut(s)	57, 99, 261, 777
BspANI	GGCC	7 cut(s)	5, 18, 65, 440, 457, 593, 818
BspCNI	CTCAG	3 cut(s)	502, 619, 807
BspLI	GGNNCC	7 cut(s)	77, 78, 103, 118, 468, 649, 813
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	466
BspTNI	GGTCTC	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	288, 374
BssECI	CCNNGG	6 cut(s)	60, 72, 94, 106, 120, 435
BssMI	GATC	1 cut(s)	216
BssNI	GRCGYC	1 cut(s)	837
BssT1I	CCWWGG	2 cut(s)	60, 435
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	3 cut(s)	25, 195, 227
Bst6I	CTCTTC	1 cut(s)	697
BstACI	GRCGYC	1 cut(s)	837
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	510, 606, 794
BstDSI	CCRYGG	2 cut(s)	60, 435
BstF5I	GGATG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	4 cut(s)	55, 253, 744, 756
BstMBI	GATC	1 cut(s)	216
BstMCI	CGRYCG	3 cut(s)	668, 737, 819
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	8 cut(s)	71, 72, 94, 147, 643, 649, 662, 813
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	3 cut(s)	280, 576, 769
BstV2I	GAAGAC	1 cut(s)	124
BstZI	CGGCCG	1 cut(s)	816
Bsu36I	CCTNAGG	1 cut(s)	510
BsuRI	GGCC	7 cut(s)	5, 18, 65, 440, 457, 593, 818
BtgI	CCRYGG	2 cut(s)	60, 435
BtsCI	GGATG	1 cut(s)	27
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	21, 595
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	8 cut(s)	16, 64, 76, 117, 439, 592, 647, 811
Cfr9I	CCCGGG	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	112, 610
CviAII	CATG	2 cut(s)	61, 436
CviQI	GTAC	2 cut(s)	112, 610
DdeI	CTNAG	3 cut(s)	510, 606, 794
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
DraI	TTTAAA	1 cut(s)	541
EaeI	YGGCCR	2 cut(s)	3, 816
EagI	CGGCCG	1 cut(s)	816
Eam1104I	CTCTTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	697
EciI	GGCGGA	1 cut(s)	114
EclXI	CGGCCG	1 cut(s)	816
Eco130I	CCWWGG	2 cut(s)	60, 435
Eco24I	GRGCYC	2 cut(s)	106, 553
Eco31I	GGTCTC	1 cut(s)	756
Eco47I	GGWCC	4 cut(s)	76, 117, 647, 811
Eco52I	CGGCCG	1 cut(s)	816
Eco81I	CCTNAGG	1 cut(s)	510
Eco88I	CYCGRG	4 cut(s)	72, 107, 121, 546
EcoO109I	RGGNCCY	3 cut(s)	16, 76, 117
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	60, 435
EcoT38I	GRGCYC	2 cut(s)	106, 553
ErhI	CCWWGG	2 cut(s)	60, 435
Esp3I	CGTCTC	2 cut(s)	55, 744
FaeI	CATG	2 cut(s)	64, 439
FaiI	YATR	4 cut(s)	62, 437, 447, 522
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	2 cut(s)	60, 435
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	269, 565, 778, 783
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	2 cut(s)	106, 553
Fsp4HI	GCNGC	4 cut(s)	269, 565, 778, 783
FspBI	CTAG	3 cut(s)	159, 329, 488
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	4 cut(s)	269, 565, 778, 783
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	783
HaeIII	GGCC	7 cut(s)	5, 18, 65, 440, 457, 593, 818
HhaI	GCGC	1 cut(s)	782
Hin1I	GRCGYC	1 cut(s)	837
Hin1II	CATG	2 cut(s)	64, 439
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	431, 618, 717, 763
HphI	GGTGA	3 cut(s)	196, 476, 710
Hpy166II	GTNNAC	2 cut(s)	145, 184
Hpy188I	TCNGA	6 cut(s)	617, 660, 670, 797, 811, 835
Hpy188III	TCNNGA	2 cut(s)	214, 313
Hpy8I	GTNNAC	2 cut(s)	145, 184
Hpy99I	CGWCG	3 cut(s)	763, 839, 842
HpyAV	CCTTC	3 cut(s)	7, 55, 779
HpyCH4III	ACNGT	3 cut(s)	25, 195, 227
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	6 cut(s)	283, 294, 428, 564, 600, 785
HpyF3I	CTNAG	3 cut(s)	510, 606, 794
HpySE526I	ACGT	1 cut(s)	837
Hsp92I	GRCGYC	1 cut(s)	837
Hsp92II	CATG	2 cut(s)	64, 439
HspAI	GCGC	1 cut(s)	780
KflI	GGGWCCC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	4 cut(s)	39, 101, 685, 735
Lsp1109I	GCAGC	3 cut(s)	280, 576, 769
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	3 cut(s)	159, 329, 488
MaeII	ACGT	1 cut(s)	837
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	4 cut(s)	124, 127, 635, 684
MhlI	GDGCHC	3 cut(s)	106, 471, 553
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	558
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	440, 627
MmeI	TCCRAC	3 cut(s)	648, 683, 858
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	396, 540, 557
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	8 cut(s)	73, 74, 96, 149, 645, 651, 664, 815
Mva1269I	GAATGC	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	149
NciI	CCSGG	7 cut(s)	73, 74, 96, 645, 651, 664, 815
NcoI	CCATGG	2 cut(s)	60, 435
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	2 cut(s)	64, 439
NlaIV	GGNNCC	7 cut(s)	77, 78, 103, 118, 468, 649, 813
NmeAIII	GCCGAG	1 cut(s)	433
PaeR7I	CTCGAG	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 637
PctI	GAATGC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	2 cut(s)	717, 763
PflFI	GACNNNGTC	1 cut(s)	664
PkrI	GCNGC	4 cut(s)	270, 566, 779, 784
PleI	GAGTC	2 cut(s)	439, 626
PpsI	GAGTC	2 cut(s)	439, 626
PpuMI	RGGWCCY	2 cut(s)	76, 117
PshBI	ATTAAT	1 cut(s)	557
Psp5II	RGGWCCY	2 cut(s)	76, 117
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	7 cut(s)	77, 78, 103, 118, 468, 649, 813
PspPI	GGNCC	8 cut(s)	16, 64, 76, 117, 439, 592, 647, 811
PspPPI	RGGWCCY	2 cut(s)	76, 117
PspXI	VCTCGAGB	1 cut(s)	546
PsyI	GACNNNGTC	1 cut(s)	664
RsaI	GTAC	2 cut(s)	113, 611
RsaNI	GTAC	2 cut(s)	112, 610
SaqAI	TTAA	3 cut(s)	396, 540, 557
SatI	GCNGC	4 cut(s)	269, 565, 778, 783
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	8 cut(s)	16, 64, 76, 117, 439, 592, 647, 811
SchI	GAGTC	2 cut(s)	440, 627
ScrFI	CCNGG	8 cut(s)	73, 74, 96, 149, 645, 651, 664, 815
SduI	GDGCHC	3 cut(s)	106, 471, 553
SetI	ASST	9 cut(s)	36, 150, 309, 454, 489, 547, 682, 692, 840
SfaNI	GCATC	1 cut(s)	311
Sfr274I	CTCGAG	1 cut(s)	546
SinI	GGWCC	4 cut(s)	76, 117, 647, 811
SlaI	CTCGAG	1 cut(s)	546
SmaI	CCCGGG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
Sse9I	AATT	1 cut(s)	558
SsiI	CCGC	4 cut(s)	57, 99, 261, 777
SspMI	CTAG	3 cut(s)	159, 329, 488
StyD4I	CCNGG	8 cut(s)	71, 72, 94, 147, 643, 649, 662, 813
StyI	CCWWGG	2 cut(s)	60, 435
TaaI	ACNGT	3 cut(s)	25, 195, 227
TaiI	ACGT	1 cut(s)	840
TaqI	TCGA	8 cut(s)	215, 312, 392, 547, 621, 631, 758, 851
TasI	AATT	1 cut(s)	558
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	1 cut(s)	780
TfiI	GAWTC	2 cut(s)	717, 763
Tru1I	TTAA	3 cut(s)	396, 540, 557
Tru9I	TTAA	3 cut(s)	396, 540, 557
TscAI	CASTG	2 cut(s)	28, 602
TseI	GCWGC	3 cut(s)	268, 564, 782
TspDTI	ATGAA	2 cut(s)	462, 512
TspMI	CCCGGG	1 cut(s)	72
TspRI	CASTG	2 cut(s)	28, 602
Tth111I	GACNNNGTC	1 cut(s)	664
VpaK11BI	GGWCC	4 cut(s)	76, 117, 647, 811
VspI	ATTAAT	1 cut(s)	557
XhoI	CTCGAG	1 cut(s)	546
XmaI	CCCGGG	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	3 cut(s)	159, 329, 488
ZraI	GACGTC	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.