Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010408.1

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Reverse (-)

55158 .. 60436

Gene Structure 5279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010408.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgttccaggtcctccggcgctccacccaggccctcccacgttcgcccagcccctccggcgctagacccagccacttatgtgttcgacgttcgacccagtatccatttcggggttcgacgttcgatctagcccctccggtgctggaccaagggctcgtcgatacgagttcgtggacatgcggaacgcaagaatcggaaaacgaaaatatcctgctgacccgacccgaacccagtattccgacccggtcggaacttgcaactctggcgacctcttctggtgaaaccagcccagaacgactcgcctccttgctccggtcgtctctgtggtggcctcttacggcgattctccttcgcggtggcgctgcaaggcagcacaggttatggaaatcagacccgaccggaaatcgtagctccggcgacggcacggcttcaagtttccttccttggcttcgtgggggtcgtctgagtcgatctatggtgtttgttttgattggtttacgtggaaatcggttcaactcagttgggattactgttgcagatggcgaccttgatgttgatttcatgatcagatggagtctgaaatcatatgtcacagatggtgacaggttgcagatggtgatcaaggtcagggaaatcgtggctgaagctgaggtagcttgttggcagcagaacgggtatgaagcaaattttgttggctttgccaattctgcgatttgggttctgcgattcgcctcagatcgcgagatgggtagtttgggggctatgctgaaacacccagatgacatttaccctcttttgaagctcaagatggcgtccaggaacatcgagaagcagatccctcccgagcctcattgggctttctgctacaccatgcttcacaaggtctccaggagcttcgctctcgttattcagcagctcggtacggagctccgtaatgctgtaagttcttatcttttcttttgctctgatcatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004310 GO:0004311 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006629 GO:0006644 GO:0006694 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016740 GO:0016765 GO:0019637 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045338 GO:0051996 GO:0071704 GO:0071944 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

SQS_PSY

Protein Analysis

325

Amino Acids

36.25

Weight (kDa)

9.2

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	354, 741
AciI	CCGC	2 cut(s)	180, 354
AclWI	GGATC	1 cut(s)	829
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	1 cut(s)	812
AfaI	GTAC	1 cut(s)	922
AfiI	CCNNNNNNNGG	2 cut(s)	110, 312
AgsI	TTSAA	3 cut(s)	432, 514, 799
AjnI	CCWGG	4 cut(s)	6, 27, 815, 887
AleI	CACNNNNGTG	1 cut(s)	78
AluBI	AGCT	7 cut(s)	411, 647, 656, 802, 894, 916, 928
AluI	AGCT	7 cut(s)	411, 647, 656, 802, 894, 916, 928
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	2 cut(s)	324, 889
AlwI	GGATC	1 cut(s)	829
Ama87I	CYCGRG	1 cut(s)	842
AoxI	GGCC	2 cut(s)	30, 329
ApeKI	GCWGC	4 cut(s)	362, 370, 664, 913
ApoI	RAATTY	1 cut(s)	685
AspLEI	GCGC	3 cut(s)	21, 62, 362
AspS9I	GGNCC	3 cut(s)	10, 31, 145
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	290, 611, 628
AvaI	CYCGRG	1 cut(s)	842
AvaII	GGWCC	2 cut(s)	10, 145
BanII	GRGCYC	2 cut(s)	156, 930
Bbv12I	GWGCWC	1 cut(s)	930
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	4 cut(s)	349, 382, 676, 925
BccI	CCATC	6 cut(s)	533, 564, 590, 607, 739, 802
BceAI	ACGGC	3 cut(s)	354, 436, 441
BciT130I	CCWGG	4 cut(s)	8, 29, 817, 889
BciVI	GTATCC	1 cut(s)	111
BclI	TGATCA	3 cut(s)	564, 618, 967
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	324, 889
BfaI	CTAG	2 cut(s)	63, 128
BfoI	RGCGCY	3 cut(s)	22, 63, 363
BfuI	GTATCC	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	4 cut(s)	363, 371, 665, 914
BlsI	GCNGC	4 cut(s)	364, 372, 666, 915
Bme1390I	CCNGG	5 cut(s)	8, 29, 244, 817, 889
Bme18I	GGWCC	2 cut(s)	10, 145
BmeT110I	CYCGRG	1 cut(s)	842
BmgT120I	GGNCC	3 cut(s)	10, 31, 145
BmrFI	CCNGG	5 cut(s)	8, 29, 244, 817, 889
BmrI	ACTGGG	2 cut(s)	91, 225
BmuI	ACTGGG	2 cut(s)	91, 225
BplI	GAGNNNNNCTC	2 cut(s)	883, 915
BpmI	CTGGAG	1 cut(s)	871
Bpu10I	CCTNAGC	1 cut(s)	648
BpuEI	CTTGAG	1 cut(s)	788
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	812
BsaI	GGTCTC	1 cut(s)	889
BsaJI	CCNNGG	3 cut(s)	27, 148, 443
BsaWI	WCCGGW	3 cut(s)	136, 312, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 312
Bse1I	ACTGG	2 cut(s)	97, 231
Bse8I	GATNNNNATC	1 cut(s)	617
BseBI	CCWGG	4 cut(s)	8, 29, 817, 889
BseDI	CCNNGG	3 cut(s)	27, 148, 443
BseJI	GATNNNNATC	1 cut(s)	617
BseLI	CCNNNNNNNGG	2 cut(s)	110, 312
BseMII	CTCAG	4 cut(s)	455, 531, 639, 747
BseNI	ACTGG	2 cut(s)	97, 231
BseXI	GCAGC	4 cut(s)	349, 382, 676, 925
BseYI	CCCAGC	2 cut(s)	47, 68
Bsh1236I	CGCG	2 cut(s)	354, 741
Bsh1285I	CGRYCG	3 cut(s)	248, 317, 399
BshFI	GGCC	2 cut(s)	32, 331
BsiEI	CGRYCG	3 cut(s)	248, 317, 399
BsiHKAI	GWGCWC	1 cut(s)	930
BsiHKCI	CYCGRG	1 cut(s)	842
BsiSI	CCGG	7 cut(s)	16, 57, 137, 244, 313, 399, 414
BslI	CCNNNNNNNGG	2 cut(s)	110, 312
BsmAI	GTCTC	2 cut(s)	324, 889
BsmBI	CGTCTC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	32, 331
Bso31I	GGTCTC	1 cut(s)	889
BsoBI	CYCGRG	1 cut(s)	842
Bsp1286I	GDGCHC	2 cut(s)	156, 930
Bsp143I	GATC	7 cut(s)	124, 470, 564, 618, 736, 834, 967
Bsp68I	TCGCGA	1 cut(s)	741
BspACI	CCGC	2 cut(s)	180, 354
BspANI	GGCC	2 cut(s)	32, 331
BspCNI	CTCAG	4 cut(s)	456, 530, 640, 746
BspFNI	CGCG	2 cut(s)	354, 741
BspHI	TCATGA	1 cut(s)	561
BspPI	GGATC	1 cut(s)	829
BspTNI	GGTCTC	1 cut(s)	889
BsrI	ACTGG	2 cut(s)	97, 231
BssECI	CCNNGG	3 cut(s)	27, 148, 443
BssMI	GATC	7 cut(s)	124, 470, 564, 618, 736, 834, 967
BssNI	GRCGYC	1 cut(s)	812
BssT1I	CCWWGG	2 cut(s)	148, 443
Bst2UI	CCWGG	4 cut(s)	8, 29, 817, 889
Bst4CI	ACNGT	1 cut(s)	532
Bst6I	CTCTTC	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	812
BstBAI	YACGTR	1 cut(s)	500
BstDEI	CTNAG	4 cut(s)	464, 517, 648, 733
BstFNI	CGCG	2 cut(s)	354, 741
BstH2I	RGCGCY	3 cut(s)	22, 63, 363
BstHHI	GCGC	3 cut(s)	21, 62, 362
BstKTI	GATC	7 cut(s)	127, 473, 567, 621, 739, 837, 970
BstMAI	GTCTC	2 cut(s)	324, 889
BstMBI	GATC	7 cut(s)	124, 470, 564, 618, 736, 834, 967
BstMCI	CGRYCG	3 cut(s)	248, 317, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 263, 653, 707
BstNI	CCWGG	4 cut(s)	8, 29, 817, 889
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	5 cut(s)	6, 27, 242, 815, 887
BstUI	CGCG	2 cut(s)	354, 741
BstV1I	GCAGC	4 cut(s)	349, 382, 676, 925
BstX2I	RGATCY	1 cut(s)	834
BstYI	RGATCY	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	32, 331
BtuMI	TCGCGA	1 cut(s)	741
CciI	TCATGA	1 cut(s)	561
CfoI	GCGC	3 cut(s)	21, 62, 362
Cfr13I	GGNCC	3 cut(s)	10, 31, 145
CseI	GACGC	1 cut(s)	801
Csp6I	GTAC	1 cut(s)	921
CviAII	CATG	4 cut(s)	177, 562, 871, 971
CviQI	GTAC	1 cut(s)	921
DdeI	CTNAG	4 cut(s)	464, 517, 648, 733
DpnI	GATC	7 cut(s)	126, 472, 566, 620, 738, 836, 969
DpnII	GATC	7 cut(s)	124, 470, 564, 618, 736, 834, 967
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	928
Eco130I	CCWWGG	2 cut(s)	148, 443
Eco24I	GRGCYC	2 cut(s)	156, 930
Eco31I	GGTCTC	1 cut(s)	889
Eco47I	GGWCC	2 cut(s)	10, 145
Eco53kI	GAGCTC	1 cut(s)	928
Eco57I	CTGAAG	1 cut(s)	663
Eco88I	CYCGRG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	928
EcoO109I	RGGNCCY	2 cut(s)	10, 31
EcoRII	CCWGG	4 cut(s)	6, 27, 815, 887
EcoT14I	CCWWGG	2 cut(s)	148, 443
EcoT38I	GRGCYC	2 cut(s)	156, 930
ErhI	CCWWGG	2 cut(s)	148, 443
Esp3I	CGTCTC	1 cut(s)	324
FaeI	CATG	4 cut(s)	180, 565, 874, 974
FatI	CATG	4 cut(s)	176, 561, 870, 970
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	3 cut(s)	564, 618, 967
Fnu4HI	GCNGC	4 cut(s)	363, 371, 665, 914
FriOI	GRGCYC	2 cut(s)	156, 930
Fsp4HI	GCNGC	4 cut(s)	363, 371, 665, 914
FspBI	CTAG	2 cut(s)	63, 128
GlaI	GCGC	3 cut(s)	20, 61, 361
GluI	GCNGC	4 cut(s)	363, 371, 665, 914
GsaI	CCCAGC	2 cut(s)	51, 72
GsuI	CTGGAG	1 cut(s)	871
HaeII	RGCGCY	3 cut(s)	22, 63, 363
HaeIII	GGCC	2 cut(s)	32, 331
HapII	CCGG	7 cut(s)	16, 57, 137, 244, 313, 399, 414
HgaI	GACGC	1 cut(s)	801
HhaI	GCGC	3 cut(s)	21, 62, 362
Hin1I	GRCGYC	1 cut(s)	812
Hin1II	CATG	4 cut(s)	180, 565, 874, 974
Hin6I	GCGC	3 cut(s)	19, 60, 360
HinP1I	GCGC	3 cut(s)	19, 60, 360
HinfI	GANTC	6 cut(s)	191, 297, 343, 466, 574, 726
HpaII	CCGG	7 cut(s)	16, 57, 137, 244, 313, 399, 414
HphI	GGTGA	3 cut(s)	290, 611, 628
Hpy166II	GTNNAC	2 cut(s)	174, 497
Hpy188I	TCNGA	9 cut(s)	196, 240, 250, 391, 465, 569, 579, 736, 967
Hpy188III	TCNNGA	5 cut(s)	562, 740, 805, 826, 842
Hpy8I	GTNNAC	2 cut(s)	174, 497
Hpy99I	CGWCG	4 cut(s)	90, 121, 161, 422
HpyAV	CCTTC	2 cut(s)	359, 449
HpyCH4III	ACNGT	1 cut(s)	532
HpyCH4IV	ACGT	4 cut(s)	40, 88, 119, 499
HpyCH4V	TGCA	4 cut(s)	257, 365, 536, 610
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 263, 653, 707
HpyF3I	CTNAG	4 cut(s)	464, 517, 648, 733
HpySE526I	ACGT	4 cut(s)	40, 88, 119, 499
Hsp92I	GRCGYC	1 cut(s)	812
Hsp92II	CATG	4 cut(s)	180, 565, 874, 974
HspAI	GCGC	3 cut(s)	19, 60, 360
Ksp22I	TGATCA	3 cut(s)	564, 618, 967
Kzo9I	GATC	7 cut(s)	124, 470, 564, 618, 736, 834, 967
LmnI	GCTCC	6 cut(s)	26, 315, 416, 891, 925, 933
Lsp1109I	GCAGC	4 cut(s)	349, 382, 676, 925
MaeI	CTAG	2 cut(s)	63, 128
MaeII	ACGT	4 cut(s)	40, 88, 119, 499
MaeIII	GTNAC	2 cut(s)	589, 599
MalI	GATC	7 cut(s)	126, 472, 566, 620, 738, 836, 969
MboI	GATC	7 cut(s)	124, 470, 564, 618, 736, 834, 967
MboII	GAAGA	1 cut(s)	264
MflI	RGATCY	1 cut(s)	834
MhlI	GDGCHC	2 cut(s)	156, 930
MluCI	AATT	2 cut(s)	685, 703
MlyI	GAGTC	3 cut(s)	291, 475, 583
MmeI	TCCRAC	2 cut(s)	228, 263
MslI	CAYNNNNRTG	2 cut(s)	78, 777
MspI	CCGG	7 cut(s)	16, 57, 137, 244, 313, 399, 414
MspR9I	CCNGG	5 cut(s)	8, 29, 244, 817, 889
MvaI	CCWGG	4 cut(s)	8, 29, 817, 889
MvnI	CGCG	2 cut(s)	354, 741
MwoI	GCNNNNNNNGC	4 cut(s)	57, 263, 653, 707
NciI	CCSGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	7 cut(s)	124, 470, 564, 618, 736, 834, 967
NlaIII	CATG	4 cut(s)	180, 565, 874, 974
NmuCI	GTSAC	2 cut(s)	589, 599
NruI	TCGCGA	1 cut(s)	741
NspI	RCATGY	1 cut(s)	180
OliI	CACNNNNGTG	1 cut(s)	78
PagI	TCATGA	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	2 cut(s)	457, 466
PfeI	GAWTC	3 cut(s)	191, 343, 726
PflFI	GACNNNGTC	1 cut(s)	244
PfoI	TCCNGGA	2 cut(s)	815, 887
PkrI	GCNGC	4 cut(s)	364, 372, 666, 915
PleI	GAGTC	3 cut(s)	291, 474, 582
PpsI	GAGTC	3 cut(s)	291, 474, 582
Ppu21I	YACGTR	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	930
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	4 cut(s)	6, 27, 815, 887
PspFI	CCCAGC	2 cut(s)	47, 68
PspGI	CCWGG	4 cut(s)	6, 27, 815, 887
PspPI	GGNCC	3 cut(s)	10, 31, 145
PspPPI	RGGWCCY	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	834
PsyI	GACNNNGTC	1 cut(s)	244
RruI	TCGCGA	1 cut(s)	741
RsaI	GTAC	1 cut(s)	922
RsaNI	GTAC	1 cut(s)	921
RseI	CAYNNNNRTG	2 cut(s)	78, 777
SacI	GAGCTC	1 cut(s)	930
SatI	GCNGC	4 cut(s)	363, 371, 665, 914
Sau3AI	GATC	7 cut(s)	124, 470, 564, 618, 736, 834, 967
Sau96I	GGNCC	3 cut(s)	10, 31, 145
SchI	GAGTC	3 cut(s)	291, 475, 583
ScrFI	CCNGG	5 cut(s)	8, 29, 244, 817, 889
SduI	GDGCHC	2 cut(s)	156, 930
SinI	GGWCC	2 cut(s)	10, 145
SmiMI	CAYNNNNRTG	2 cut(s)	78, 777
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	2 cut(s)	685, 703
SsiI	CCGC	2 cut(s)	180, 354
SspMI	CTAG	2 cut(s)	63, 128
SstI	GAGCTC	1 cut(s)	930
StyD4I	CCNGG	5 cut(s)	6, 27, 242, 815, 887
StyI	CCWWGG	2 cut(s)	148, 443
TaaI	ACNGT	1 cut(s)	532
TaiI	ACGT	4 cut(s)	43, 91, 122, 502
TaqI	TCGA	7 cut(s)	85, 92, 116, 123, 159, 469, 825
TasI	AATT	2 cut(s)	685, 703
TfiI	GAWTC	3 cut(s)	191, 343, 726
TseFI	GTSAC	2 cut(s)	589, 599
TseI	GCWGC	4 cut(s)	362, 370, 664, 913
Tsp45I	GTSAC	2 cut(s)	589, 599
TspDTI	ATGAA	2 cut(s)	550, 693
TspGWI	ACGGA	2 cut(s)	920, 938
Tth111I	GACNNNGTC	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	10, 145
XapI	RAATTY	1 cut(s)	685
XceI	RCATGY	1 cut(s)	180
XspI	CTAG	2 cut(s)	63, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.