Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Reverse (-)

51703391 .. 51711292

Gene Structure 7902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGACCGACACCCTCTCTCTCTTCTCTCTCGACCGCTCCTTCAGTATGCAAGTTTTTCGACCGACCCGACCCGGACCCGGCCGACCCGACCCGGCCGTAACTTCCAGCTCCGGCCACCTCCGGCGACGAAACTTCACCAGCAGGGTCGCCTCTTCCTTCCGATCGTCCCTGTGGTGGTCGCCGCCGACGATTCAAGCCCACGGCGGCGCTGCAAGGATGAACAGTCGTATGAAGCACGACCCGGCCGGAAATTGCAGCTCCGACGTCGGCACGACCTCGGGTTTCTTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.56

Weight (kDa)

11.76

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	267
AccBSI	CCGCTC	1 cut(s)	36
AciI	CCGC	3 cut(s)	34, 182, 204
AcoI	YGGCCR	4 cut(s)	79, 93, 112, 243
AcuI	CTGAAG	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	264
AfiI	CCNNNNNNNGG	2 cut(s)	77, 174
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	2 cut(s)	108, 258
AluI	AGCT	2 cut(s)	108, 258
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	4 cut(s)	79, 93, 112, 243
ApeKI	GCWGC	2 cut(s)	209, 255
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	4 cut(s)	72, 78, 92, 242
AsuHPI	GGTGA	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	196, 267
BceAI	ACGGC	2 cut(s)	80, 217
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BcnI	CCSGG	4 cut(s)	72, 78, 92, 242
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	4 cut(s)	182, 205, 210, 256
BlsI	GCNGC	4 cut(s)	183, 206, 211, 257
Bme1390I	CCNGG	4 cut(s)	72, 78, 92, 242
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	4 cut(s)	72, 78, 92, 242
BpuMI	CCSGG	4 cut(s)	72, 78, 92, 242
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	199, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 174
BseDI	CCNNGG	2 cut(s)	199, 276
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	77, 174
BseX3I	CGGCCG	3 cut(s)	79, 93, 243
BseXI	GCAGC	2 cut(s)	196, 267
Bsh1285I	CGRYCG	6 cut(s)	34, 62, 82, 96, 164, 246
BshFI	GGCC	4 cut(s)	81, 95, 114, 245
BsiEI	CGRYCG	6 cut(s)	34, 62, 82, 96, 164, 246
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	7 cut(s)	72, 78, 92, 111, 121, 242, 246
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	77, 174
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	4 cut(s)	81, 95, 114, 245
BsoBI	CYCGRG	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	161
BspACI	CCGC	3 cut(s)	34, 182, 204
BspANI	GGCC	4 cut(s)	81, 95, 114, 245
BspLI	GGNNCC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	199, 276
BssMI	GATC	1 cut(s)	161
BssNI	GRCGYC	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	26, 157
BstACI	GRCGYC	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstMCI	CGRYCG	6 cut(s)	34, 62, 82, 96, 164, 246
BstSCI	CCNGG	4 cut(s)	70, 76, 90, 240
BstV1I	GCAGC	2 cut(s)	196, 267
BstZI	CGGCCG	3 cut(s)	79, 93, 243
BsuRI	GGCC	4 cut(s)	81, 95, 114, 245
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	222
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	74
CviJI	RGCY	7 cut(s)	81, 95, 108, 114, 197, 245, 258
CviKI_1	RGCY	7 cut(s)	81, 95, 108, 114, 197, 245, 258
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
EaeI	YGGCCR	4 cut(s)	79, 93, 112, 243
EagI	CGGCCG	3 cut(s)	79, 93, 243
Eam1104I	CTCTTC	2 cut(s)	26, 157
EarI	CTCTTC	2 cut(s)	26, 157
EclXI	CGGCCG	3 cut(s)	79, 93, 243
Eco47I	GGWCC	1 cut(s)	74
Eco52I	CGGCCG	3 cut(s)	79, 93, 243
Eco57I	CTGAAG	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	277
FaiI	YATR	2 cut(s)	47, 230
FaqI	GGGAC	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	182, 205, 210, 256
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	4 cut(s)	182, 205, 210, 256
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	4 cut(s)	182, 205, 210, 256
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	81, 95, 114, 245
HapII	CCGG	7 cut(s)	72, 78, 92, 111, 121, 242, 246
HhaI	GCGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	264
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	7 cut(s)	72, 78, 92, 111, 121, 242, 246
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	2 cut(s)	161, 262
Hpy188III	TCNNGA	1 cut(s)	29
Hpy99I	CGWCG	4 cut(s)	129, 190, 266, 269
HpyAV	CCTTC	2 cut(s)	49, 166
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	49, 212, 255
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	264
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	3 cut(s)	41, 113, 263
Lsp1109I	GCAGC	2 cut(s)	196, 267
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	163
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	1 cut(s)	161
MboII	GAAGA	2 cut(s)	13, 144
MluCI	AATT	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	23, 128, 160, 286
MspI	CCGG	7 cut(s)	72, 78, 92, 111, 121, 242, 246
MspR9I	CCNGG	4 cut(s)	72, 78, 92, 242
NciI	CCSGG	4 cut(s)	72, 78, 92, 242
NdeII	GATC	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	2 cut(s)	64, 185
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	183, 206, 211, 257
Ple19I	CGATCG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	164
SatI	GCNGC	4 cut(s)	182, 205, 210, 256
Sau3AI	GATC	1 cut(s)	161
Sau96I	GGNCC	1 cut(s)	74
ScrFI	CCNGG	4 cut(s)	72, 78, 92, 242
SetI	ASST	5 cut(s)	110, 120, 260, 267, 278
SinI	GGWCC	1 cut(s)	74
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	3 cut(s)	34, 182, 204
StyD4I	CCNGG	4 cut(s)	70, 76, 90, 240
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	30, 58
TaqII	GACCGA	2 cut(s)	20, 76
TasI	AATT	1 cut(s)	250
TauI	GCSGC	2 cut(s)	184, 207
TfiI	GAWTC	1 cut(s)	190
TseI	GCWGC	2 cut(s)	209, 255
TspDTI	ATGAA	2 cut(s)	233, 245
VpaK11BI	GGWCC	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.