Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005469.1

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Forward (+)

2030 .. 2781

Gene Structure 752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005469.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggatcgacccagattcctaatcgaagccttggaggccaagtcaatggccaagcagaatggactcactgtcgtccagctcctctcgtccttcgtcgaaccctccatggccctcgcccgggtccctatctccaaattccccaacggagccctcgggtactggtcttcagtcgaagccccgcctcaaatacatcaccttctcaccgccccctgtggccattgctgccaattcttccaagaaatccgccgcatccaagacatcaagatcctcatcatctctaccgaggtcggagaagacgacagggacaaaaacaacacattgtgcggccaattaagccccctccaccacctcatcccccaccgatttggccctaaagacctcctcagtgaggacgtgctggcgtgccatcaccgtggggtgcagtcgtcgggggagtcccttgacctgatttcttcttcaagagtactggatgaggagagcaccaacctcgccacaaggttcttctctagccttccgaggaaggacttcttgccttacggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

180

Amino Acids

20.09

Weight (kDa)

6.22

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	179, 204, 244, 247, 324
AclWI	GGATC	2 cut(s)	12, 259
AcoI	YGGCCR	3 cut(s)	48, 214, 325
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	158, 465
AfiI	CCNNNNNNNGG	3 cut(s)	117, 118, 388
AgsI	TTSAA	1 cut(s)	459
AhdI	GACNNNNNGTC	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	394
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw21I	GWGCWC	1 cut(s)	482
AlwI	GGATC	2 cut(s)	12, 259
Ama87I	CYCGRG	2 cut(s)	117, 152
AoxI	GGCC	6 cut(s)	36, 48, 108, 214, 325, 367
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	3 cut(s)	109, 121, 368
AsuC2I	CCSGG	2 cut(s)	118, 119
AsuHPI	GGTGA	3 cut(s)	185, 193, 401
AvaI	CYCGRG	2 cut(s)	117, 152
AvaII	GGWCC	1 cut(s)	121
BalI	TGGCCA	2 cut(s)	50, 216
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	2 cut(s)	156, 300
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	414
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BcnI	CCSGG	2 cut(s)	118, 119
BfaI	CTAG	1 cut(s)	507
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	3 cut(s)	223, 247, 325
BlsI	GCNGC	3 cut(s)	224, 248, 326
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	2 cut(s)	118, 119
Bme18I	GGWCC	1 cut(s)	121
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmeT110I	CYCGRG	2 cut(s)	117, 152
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	109, 121, 368
BmiI	GGNNCC	3 cut(s)	122, 123, 148
BmrFI	CCNGG	2 cut(s)	118, 119
BmsI	GCATC	1 cut(s)	258
BpiI	GAAGAC	2 cut(s)	156, 300
BpuMI	CCSGG	2 cut(s)	118, 119
BsaBI	GATNNNNATC	1 cut(s)	269
BsaJI	CCNNGG	7 cut(s)	30, 105, 117, 151, 282, 412, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 118, 388
Bse1I	ACTGG	2 cut(s)	164, 471
Bse3DI	GCAATG	1 cut(s)	217
Bse8I	GATNNNNATC	1 cut(s)	269
BseDI	CCNNGG	7 cut(s)	30, 105, 117, 151, 282, 412, 515
BseGI	GGATG	3 cut(s)	249, 351, 475
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	3 cut(s)	117, 118, 388
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	2 cut(s)	164, 471
BseRI	GAGGAG	3 cut(s)	71, 371, 488
BseXI	GCAGC	1 cut(s)	209
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	6 cut(s)	38, 50, 110, 216, 327, 369
BsiHKAI	GWGCWC	1 cut(s)	482
BsiHKCI	CYCGRG	2 cut(s)	117, 152
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	3 cut(s)	107, 317, 421
BslI	CCNNNNNNNGG	3 cut(s)	117, 118, 388
BsmFI	GGGAC	3 cut(s)	107, 317, 421
BsnI	GGCC	6 cut(s)	38, 50, 110, 216, 327, 369
BsoBI	CYCGRG	2 cut(s)	117, 152
Bsp1286I	GDGCHC	2 cut(s)	151, 482
Bsp143I	GATC	2 cut(s)	4, 264
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	5 cut(s)	179, 204, 244, 247, 324
BspANI	GGCC	6 cut(s)	38, 50, 110, 216, 327, 369
BspCNI	CTCAG	1 cut(s)	396
BspLI	GGNNCC	3 cut(s)	122, 123, 148
BspPI	GGATC	2 cut(s)	12, 259
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	164, 471
BssECI	CCNNGG	7 cut(s)	30, 105, 117, 151, 282, 412, 515
BssMI	GATC	2 cut(s)	4, 264
BssT1I	CCWWGG	2 cut(s)	30, 105
Bst4CI	ACNGT	2 cut(s)	70, 413
BstC8I	GCNNGC	2 cut(s)	399, 403
BstDEI	CTNAG	1 cut(s)	383
BstDSI	CCRYGG	2 cut(s)	105, 412
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	3 cut(s)	249, 351, 475
BstKTI	GATC	2 cut(s)	7, 267
BstMBI	GATC	2 cut(s)	4, 264
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 222, 333
BstSCI	CCNGG	2 cut(s)	116, 117
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	2 cut(s)	156, 300
BstX2I	RGATCY	1 cut(s)	264
BstXI	CCANNNNNNTGG	3 cut(s)	46, 365, 413
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	6 cut(s)	38, 50, 110, 216, 327, 369
BtgI	CCRYGG	2 cut(s)	105, 412
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	249, 351, 475
BtsIMutI	CAGTG	2 cut(s)	66, 391
Cac8I	GCNNGC	2 cut(s)	399, 403
Cfr13I	GGNCC	3 cut(s)	109, 121, 368
Cfr9I	CCCGGG	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	157, 464
CviAII	CATG	1 cut(s)	106
CviQI	GTAC	2 cut(s)	157, 464
DdeI	CTNAG	1 cut(s)	383
DpnI	GATC	2 cut(s)	6, 266
DpnII	GATC	2 cut(s)	4, 264
DraIII	CACNNNGTG	1 cut(s)	321
DriI	GACNNNNNGTC	1 cut(s)	68
EaeI	YGGCCR	3 cut(s)	48, 214, 325
Eam1105I	GACNNNNNGTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	30, 105
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	117, 152
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoO109I	RGGNCCY	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	30, 105
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	30, 105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FalI	AAGNNNNNCTT	1 cut(s)	512
FaqI	GGGAC	3 cut(s)	107, 317, 421
FatI	CATG	1 cut(s)	105
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	3 cut(s)	223, 247, 325
FokI	GGATG	3 cut(s)	236, 338, 482
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	3 cut(s)	223, 247, 325
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	3 cut(s)	223, 247, 325
HaeIII	GGCC	6 cut(s)	38, 50, 110, 216, 327, 369
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	3 cut(s)	15, 63, 434
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	3 cut(s)	185, 193, 401
Hpy188I	TCNGA	2 cut(s)	290, 516
Hpy188III	TCNNGA	2 cut(s)	262, 459
Hpy99I	CGWCG	2 cut(s)	98, 430
HpyAV	CCTTC	4 cut(s)	100, 206, 514, 521
HpyCH4III	ACNGT	2 cut(s)	70, 413
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 222, 333
HpyF3I	CTNAG	1 cut(s)	383
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	109
KflI	GGGWCCC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	4, 264
LmnI	GCTCC	2 cut(s)	84, 146
LpnPI	CCDG	9 cut(s)	25, 89, 131, 145, 223, 286, 383, 452, 458
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	393
MalI	GATC	2 cut(s)	6, 266
MboI	GATC	2 cut(s)	4, 264
MboII	GAAGA	6 cut(s)	156, 223, 305, 444, 447, 493
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	2 cut(s)	151, 482
MlsI	TGGCCA	2 cut(s)	50, 216
MluCI	AATT	3 cut(s)	134, 227, 329
MluNI	TGGCCA	2 cut(s)	50, 216
MlyI	GAGTC	2 cut(s)	57, 443
MmeI	TCCRAC	1 cut(s)	268
Mox20I	TGGCCA	2 cut(s)	50, 216
MroXI	GAANNNNTTC	1 cut(s)	524
MscI	TGGCCA	2 cut(s)	50, 216
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	2 cut(s)	50, 216
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	118, 119
MwoI	GCNNNNNNNGC	3 cut(s)	35, 222, 333
NciI	CCSGG	2 cut(s)	118, 119
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	4, 264
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	122, 123, 148
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	224, 248, 326
PleI	GAGTC	2 cut(s)	57, 442
PpsI	GAGTC	2 cut(s)	57, 442
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	122, 123, 148
PspPI	GGNCC	3 cut(s)	109, 121, 368
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	264
RsaI	GTAC	2 cut(s)	158, 465
RsaNI	GTAC	2 cut(s)	157, 464
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	3 cut(s)	223, 247, 325
Sau3AI	GATC	2 cut(s)	4, 264
Sau96I	GGNCC	3 cut(s)	109, 121, 368
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	2 cut(s)	57, 443
ScrFI	CCNGG	2 cut(s)	118, 119
SduI	GDGCHC	2 cut(s)	151, 482
SetI	ASST	9 cut(s)	81, 198, 288, 351, 381, 396, 447, 489, 500
SfaNI	GCATC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	121
SmaI	CCCGGG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	3 cut(s)	134, 227, 329
SsiI	CCGC	5 cut(s)	179, 204, 244, 247, 324
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	116, 117
StyI	CCWWGG	2 cut(s)	30, 105
TaaI	ACNGT	2 cut(s)	70, 413
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	4 cut(s)	7, 24, 96, 171
TasI	AATT	3 cut(s)	134, 227, 329
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	2 cut(s)	249, 327
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	2 cut(s)	73, 391
TseI	GCWGC	1 cut(s)	222
TspGWI	ACGGA	1 cut(s)	159
TspMI	CCCGGG	1 cut(s)	117
TspRI	CASTG	2 cut(s)	73, 391
VpaK11BI	GGWCC	1 cut(s)	121
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	1 cut(s)	507
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.