Rroxscaffold_5G00339090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013761
Physical Location & Seq
Forward (+)
7436522 .. 7441960
5439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339090.1

Sequence Viewer

Length: 513 bp
ATGGGTCGTCTCCTTGCTCCGGTCGTCTCGTGGTGGTCGCCGTCGACGATTCGTGCCCACGGCTGCGCTGCAAGGCTGCGCAGTTGGATGAAGCATGACCCGGCAGAAAATGCAGCTCCGACGTCGGCAAAGCTTCGGGTTTCTTTGGTTGAGCTCGGAACAAGCTCGCCGATCGACCCATGGGCTGCTTCTCATGACAGAAGATCACAGTCTGTTCCCCCAATTACTGCGTTGATTCAATATCTGATGCTGAGAGACCAAAGAAAACCTCTTCCAGGGGAGGTTACATCCATTATTTGCAGGCCTTATGGTGAAATACCAAGAGGTGCAATCGAAGATGAAGAAGACGTTCAAACGATACACGTAAAGAAGAATTTGAAGAAGAGCTTGAAGAAATCAAAAAAAGGAGACAGAAGAAACGAAGAAGAAGAAGAAGAAGAAGAAGTAGAACAATCACCAAAGAAGGTAAAGAAAGTAAAGAAGGTAAAAGATTCTCAAGAGCTAGCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.19

Weight (kDa)

9.44

Isoelectric Point (pI)

67.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 125
Acc16I TGCGCA 1 cut(s) 80
AccI GTMKAC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 373
AcyI GRCGYC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 19, 275
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 4 cut(s) 239, 353, 379, 391
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 6 cut(s) 116, 133, 154, 165, 387, 502
AluI AGCT 6 cut(s) 116, 133, 154, 165, 387, 502
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 4 cut(s) 14, 31, 249, 402
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 5 cut(s) 63, 68, 76, 113, 185
ApoI RAATTY 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 2 cut(s) 68, 81
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 323, 447
AsuNHI GCTAGC 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 156
BauI CACGAG 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 5 cut(s) 50, 55, 63, 125, 172
BceAI ACGGC 2 cut(s) 25, 76
BciT130I CCWGG 1 cut(s) 276
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 4 cut(s) 14, 31, 249, 402
BfaI CTAG 1 cut(s) 503
BisI GCNGC 5 cut(s) 64, 69, 77, 114, 186
BlsI GCNGC 5 cut(s) 65, 70, 78, 115, 187
Bme1390I CCNGG 2 cut(s) 101, 276
BmrFI CCNGG 2 cut(s) 101, 276
BmsI GCATC 1 cut(s) 237
BmtI GCTAGC 1 cut(s) 506
BpiI GAAGAC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 58, 179, 275
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 275
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 3 cut(s) 58, 179, 275
BseGI GGATG 2 cut(s) 93, 287
BseLI CCNNNNNNNGG 2 cut(s) 19, 275
BseMII CTCAG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 5 cut(s) 50, 55, 63, 125, 172
Bsh1285I CGRYCG 2 cut(s) 24, 174
BshFI GGCC 1 cut(s) 304
BsiEI CGRYCG 2 cut(s) 24, 174
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 20, 101
BslI CCNNNNNNNGG 2 cut(s) 19, 275
BsmAI GTCTC 4 cut(s) 14, 31, 249, 402
BsmBI CGTCTC 2 cut(s) 14, 31
BsnI GGCC 1 cut(s) 304
Bso31I GGTCTC 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 58, 156
Bsp143I GATC 2 cut(s) 171, 203
Bsp19I CCATGG 1 cut(s) 179
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 193
BspOI GCTAGC 1 cut(s) 506
BspQI GCTCTTC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 249
BssECI CCNNGG 3 cut(s) 58, 179, 275
BssMI GATC 2 cut(s) 171, 203
BssNI GRCGYC 1 cut(s) 122
BssSI CACGAG 1 cut(s) 28
BssT1I CCWWGG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 276, 377
BstACI GRCGYC 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 3 cut(s) 167, 302, 504
BstDEI CTNAG 1 cut(s) 251
BstDSI CCRYGG 2 cut(s) 58, 179
BstENI CCTNNNNNAGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 93, 287
BstHHI GCGC 2 cut(s) 68, 81
BstKTI GATC 2 cut(s) 174, 206
BstMAI GTCTC 4 cut(s) 14, 31, 249, 402
BstMBI GATC 2 cut(s) 171, 203
BstMCI CGRYCG 2 cut(s) 24, 174
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 99, 274
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 5 cut(s) 50, 55, 63, 125, 172
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 304
BtgI CCRYGG 2 cut(s) 58, 179
BtsCI GGATG 2 cut(s) 93, 287
Cac8I GCNNGC 3 cut(s) 167, 302, 504
CciI TCATGA 1 cut(s) 193
CfoI GCGC 2 cut(s) 68, 81
CviAII CATG 3 cut(s) 95, 180, 194
DdeI CTNAG 1 cut(s) 251
DpnI GATC 2 cut(s) 173, 205
DpnII GATC 2 cut(s) 171, 203
Eam1104I CTCTTC 2 cut(s) 276, 377
EarI CTCTTC 2 cut(s) 276, 377
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 179
Esp3I CGTCTC 2 cut(s) 14, 31
FaeI CATG 3 cut(s) 98, 183, 197
FaiI YATR 4 cut(s) 96, 181, 195, 309
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 3 cut(s) 94, 179, 193
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 5 cut(s) 64, 69, 77, 114, 186
FokI GGATG 2 cut(s) 100, 274
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 5 cut(s) 64, 69, 77, 114, 186
FspBI CTAG 1 cut(s) 503
FspI TGCGCA 1 cut(s) 80
GlaI GCGC 2 cut(s) 67, 80
GluI GCNGC 5 cut(s) 64, 69, 77, 114, 186
HaeIII GGCC 1 cut(s) 304
HapII CCGG 2 cut(s) 20, 101
HhaI GCGC 2 cut(s) 68, 81
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 3 cut(s) 98, 183, 197
Hin6I GCGC 2 cut(s) 66, 79
HinP1I GCGC 2 cut(s) 66, 79
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 3 cut(s) 49, 235, 491
HpaII CCGG 2 cut(s) 20, 101
HphI GGTGA 2 cut(s) 323, 447
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 120, 158, 246
Hpy188III TCNNGA 2 cut(s) 194, 497
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 4 cut(s) 46, 49, 124, 127
HpyAV CCTTC 2 cut(s) 457, 475
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4IV ACGT 3 cut(s) 122, 348, 363
HpyCH4V TGCA 4 cut(s) 71, 113, 300, 329
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 3 cut(s) 122, 348, 363
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 3 cut(s) 98, 183, 197
HspAI GCGC 2 cut(s) 66, 79
Kzo9I GATC 2 cut(s) 171, 203
LguI GCTCTTC 1 cut(s) 377
LmnI GCTCC 2 cut(s) 22, 121
LpnPI CCDG 5 cut(s) 33, 114, 261, 286, 288
Lsp1109I GCAGC 5 cut(s) 50, 55, 63, 125, 172
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 503
MaeII ACGT 3 cut(s) 122, 348, 363
MaeIII GTNAC 1 cut(s) 283
MalI GATC 2 cut(s) 173, 205
MboI GATC 2 cut(s) 171, 203
MhlI GDGCHC 2 cut(s) 58, 156
MluCI AATT 2 cut(s) 222, 373
MmeI TCCRAC 2 cut(s) 65, 143
MnlI CCTC 3 cut(s) 274, 279, 317
MroXI GAANNNNTTC 1 cut(s) 348
MspI CCGG 2 cut(s) 20, 101
MspR9I CCNGG 2 cut(s) 101, 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 110
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 179
NdeII GATC 2 cut(s) 171, 203
NheI GCTAGC 1 cut(s) 502
NlaIII CATG 3 cut(s) 98, 183, 197
NsbI TGCGCA 1 cut(s) 80
PagI TCATGA 1 cut(s) 193
PceI AGGCCT 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 377
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 3 cut(s) 49, 235, 491
PkrI GCNGC 5 cut(s) 65, 70, 78, 115, 187
Ple19I CGATCG 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PvuI CGATCG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 377
SatI GCNGC 5 cut(s) 64, 69, 77, 114, 186
Sau3AI GATC 2 cut(s) 171, 203
ScrFI CCNGG 2 cut(s) 101, 276
SduI GDGCHC 2 cut(s) 58, 156
SfaNI GCATC 1 cut(s) 237
SgrDI CGTCGACG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
Sse9I AATT 2 cut(s) 222, 373
SseBI AGGCCT 1 cut(s) 304
SspMI CTAG 1 cut(s) 503
SstI GAGCTC 1 cut(s) 156
StuI AGGCCT 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 99, 274
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 210
TaiI ACGT 3 cut(s) 125, 351, 366
TaqI TCGA 3 cut(s) 44, 174, 333
TasI AATT 2 cut(s) 222, 373
TfiI GAWTC 3 cut(s) 49, 235, 491
TseI GCWGC 5 cut(s) 63, 68, 76, 113, 185
TspDTI ATGAA 2 cut(s) 104, 354
XagI CCTNNNNNAGG 1 cut(s) 273
XapI RAATTY 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 503
ZraI GACGTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.