Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Reverse (-)

65554277 .. 65554778

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGACCGACCCAGATTCGTAATCGAAGCCTCGGAGGCCGAGTCAATGGCAAAGCAAAGGGGCCTCACTGTCGTGCAACTCCTCCCGTCCTTCGTCGAGCCCGCCAAGGCCCTCGCTCGGGTCCCCATCTCCAAATTCCCCGTCGAGGCCCTTAGTTCCTCGTCACCAATCTCTCGATCCAGTCGGAGCCCCGCCTCGAATACGTCGCCGCCTCTGCCGCCCCCTGCGGCCATTGCCGCTAATTCTTCCAAGAAATCCGCAGCGCCCAAGATATCAAGATCCTCATCACCTCTGCTGAGGCCAGAGAAGACGACGGCGACAAAAACGACAATTTGTGCAGCCAATTCAGCCCCCTCCGCCACCTCATCCCCCACAGATTTGGCCCCAAAGACCTCCTCAAGGAGGATGTGCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

139

Amino Acids

14.35

Weight (kDa)

10.71

Isoelectric Point (pI)

92.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	102, 192, 209, 218, 227, 237, 258, 357
AclWI	GGATC	2 cut(s)	171, 273
AcoI	YGGCCR	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	134
AfiI	CCNNNNNNNGG	5 cut(s)	117, 118, 145, 399, 402
AleI	CACNNNNGTG	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	171, 273
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	7 cut(s)	36, 61, 108, 147, 228, 299, 381
ApeKI	GCWGC	2 cut(s)	260, 338
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspLEI	GCGC	1 cut(s)	265
AspS9I	GGNCC	6 cut(s)	4, 61, 109, 121, 148, 382
AsuHPI	GGTGA	2 cut(s)	156, 279
AvaI	CYCGRG	1 cut(s)	117
AvaII	GGWCC	2 cut(s)	4, 121
BanII	GRGCYC	2 cut(s)	102, 191
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	272, 350
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	266
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	209, 218, 228, 237, 261, 339
BlsI	GCNGC	6 cut(s)	210, 219, 229, 238, 262, 340
Bme18I	GGWCC	2 cut(s)	4, 121
BmeT110I	CYCGRG	1 cut(s)	117
BmgT120I	GGNCC	6 cut(s)	4, 61, 109, 121, 148, 382
BmiI	GGNNCC	5 cut(s)	62, 122, 123, 188, 384
BpiI	GAAGAC	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	30, 105
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 118, 145, 399, 402
Bse1I	ACTGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	30, 105
BseGI	GGATG	2 cut(s)	365, 411
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	5 cut(s)	117, 118, 145, 399, 402
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	2 cut(s)	71, 385
BseXI	GCAGC	2 cut(s)	272, 350
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	7 cut(s)	38, 63, 110, 149, 230, 301, 383
BsiHKAI	GWGCWC	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	117
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	5 cut(s)	117, 118, 145, 399, 402
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	7 cut(s)	38, 63, 110, 149, 230, 301, 383
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	3 cut(s)	102, 191, 413
Bsp143I	GATC	2 cut(s)	176, 278
BspACI	CCGC	8 cut(s)	102, 192, 209, 218, 227, 237, 258, 357
BspANI	GGCC	7 cut(s)	38, 63, 110, 149, 230, 301, 383
BspCNI	CTCAG	1 cut(s)	288
BspLI	GGNNCC	5 cut(s)	62, 122, 123, 188, 384
BspPI	GGATC	2 cut(s)	171, 273
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	30, 105
BssMI	GATC	2 cut(s)	176, 278
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	70
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	152, 296
BstENI	CCTNNNNNAGG	2 cut(s)	397, 400
BstF5I	GGATG	2 cut(s)	365, 411
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	2 cut(s)	179, 281
BstMBI	GATC	2 cut(s)	176, 278
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 214, 217, 233, 236, 347, 356
BstV1I	GCAGC	2 cut(s)	272, 350
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	7 cut(s)	38, 63, 110, 149, 230, 301, 383
BtsCI	GGATG	2 cut(s)	365, 411
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	265
Cfr13I	GGNCC	6 cut(s)	4, 61, 109, 121, 148, 382
DdeI	CTNAG	2 cut(s)	152, 296
DpnI	GATC	2 cut(s)	178, 280
DpnII	GATC	2 cut(s)	176, 278
EaeI	YGGCCR	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	102, 191
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	4, 121
Eco88I	CYCGRG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	2 cut(s)	397, 400
EcoO109I	RGGNCCY	4 cut(s)	61, 109, 121, 148
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	102, 191
ErhI	CCWWGG	1 cut(s)	105
FaqI	GGGAC	1 cut(s)	107
FauI	CCCGC	2 cut(s)	109, 199
Fnu4HI	GCNGC	6 cut(s)	209, 218, 228, 237, 261, 339
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	2 cut(s)	102, 191
Fsp4HI	GCNGC	6 cut(s)	209, 218, 228, 237, 261, 339
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	6 cut(s)	209, 218, 228, 237, 261, 339
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	7 cut(s)	38, 63, 110, 149, 230, 301, 383
HhaI	GCGC	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	15, 41
HphI	GGTGA	2 cut(s)	156, 279
Hpy188I	TCNGA	2 cut(s)	34, 186
Hpy188III	TCNNGA	2 cut(s)	174, 276
Hpy99I	CGWCG	4 cut(s)	98, 146, 208, 316
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	76, 338
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 214, 217, 233, 236, 347, 356
HpyF3I	CTNAG	2 cut(s)	152, 296
HpySE526I	ACGT	1 cut(s)	203
HspAI	GCGC	1 cut(s)	263
KflI	GGGWCCC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	176, 278
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	4 cut(s)	25, 193, 237, 315
Lsp1109I	GCAGC	2 cut(s)	272, 350
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	162
MalI	GATC	2 cut(s)	178, 280
MboI	GATC	2 cut(s)	176, 278
MboII	GAAGA	2 cut(s)	237, 319
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	3 cut(s)	102, 191, 413
MluCI	AATT	4 cut(s)	134, 241, 330, 343
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	71
MwoI	GCNNNNNNNGC	7 cut(s)	35, 214, 217, 233, 236, 347, 356
NdeII	GATC	2 cut(s)	176, 278
NlaIV	GGNNCC	5 cut(s)	62, 122, 123, 188, 384
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	162
OliI	CACNNNNGTG	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	6 cut(s)	210, 219, 229, 238, 262, 340
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	121
PspN4I	GGNNCC	5 cut(s)	62, 122, 123, 188, 384
PspPI	GGNCC	6 cut(s)	4, 61, 109, 121, 148, 382
PspPPI	RGGWCCY	1 cut(s)	121
PsuI	RGATCY	1 cut(s)	278
RseI	CAYNNNNRTG	1 cut(s)	71
SatI	GCNGC	6 cut(s)	209, 218, 228, 237, 261, 339
Sau3AI	GATC	2 cut(s)	176, 278
Sau96I	GGNCC	6 cut(s)	4, 61, 109, 121, 148, 382
SchI	GAGTC	1 cut(s)	50
SduI	GDGCHC	3 cut(s)	102, 191, 413
SetI	ASST	4 cut(s)	206, 292, 365, 395
SinI	GGWCC	2 cut(s)	4, 121
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	4 cut(s)	134, 241, 330, 343
SsiI	CCGC	8 cut(s)	102, 192, 209, 218, 227, 237, 258, 357
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	5 cut(s)	24, 96, 144, 175, 197
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	134, 241, 330, 343
TauI	GCSGC	4 cut(s)	211, 220, 230, 239
TfiI	GAWTC	1 cut(s)	15
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	2 cut(s)	260, 338
Tsp45I	GTSAC	1 cut(s)	162
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	2 cut(s)	4, 121
XagI	CCTNNNNNAGG	2 cut(s)	397, 400
XapI	RAATTY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.