Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Forward (+)

20830815 .. 20831219

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGACCGACCCGCATTCGTAATTGAAGCCTCGATGGCCGAGTCAATGGCGCGAGAAGGGCCTCACCGTCGTGCGGCTCCTCCGTACTTCGTTGAGTACGCCAAGGCCCTCTCCCGGGTCCCCATCTCCAAATTCCCCTTTAGAGCCCTCGGTACGGTCTTCGGGTGGGGTCTTCTTCGGAGTCAACCTCGAGTTCCGGGGCCTCGCCTCCACTACTCCGTCCACGTCGAGCGGTTCCTCGTTACGCCGCCCTCGTGGCCATTGCAGCCAATTCTTCTAAGAAATTCGCCGCGCCCGGGACATCAAGATCCTCGTCACCTGCGCAAGTCGGGAGAAGACGATGGAGACAAAAACGACACGTCGTGCGGCCCAATTCAGCCCCCCTCGCCACCTCGTCCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

134

Amino Acids

15.03

Weight (kDa)

10.32

Isoelectric Point (pI)

74.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	327
Acc16I	TGCGCA	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	327
AccBSI	CCGCTC	1 cut(s)	232
AccII	CGCG	2 cut(s)	52, 292
AciI	CCGC	6 cut(s)	12, 74, 232, 248, 290, 366
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	2 cut(s)	36, 257
AcsI	RAATTY	2 cut(s)	131, 283
AdeI	CACNNNGTG	1 cut(s)	363
AfaI	GTAC	3 cut(s)	86, 98, 154
AfiI	CCNNNNNNNGG	5 cut(s)	73, 114, 115, 154, 296
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	26
AjiI	CACGTC	2 cut(s)	226, 360
AleI	CACNNNNGTG	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	3 cut(s)	114, 189, 295
AoxI	GGCC	6 cut(s)	36, 59, 105, 200, 257, 367
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	131, 283
AspLEI	GCGC	3 cut(s)	52, 294, 324
AspS9I	GGNCC	6 cut(s)	4, 59, 106, 118, 200, 368
AsuC2I	CCSGG	5 cut(s)	115, 116, 198, 296, 297
AsuHPI	GGTGA	2 cut(s)	56, 308
AvaI	CYCGRG	3 cut(s)	114, 189, 295
AvaII	GGWCC	2 cut(s)	4, 118
BalI	TGGCCA	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	148
BauI	CACGAG	1 cut(s)	253
BbsI	GAAGAC	3 cut(s)	151, 164, 342
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	3 cut(s)	28, 131, 335
BcnI	CCSGG	5 cut(s)	115, 116, 198, 296, 297
BcoDI	GTCTC	1 cut(s)	339
BfuAI	ACCTGC	1 cut(s)	327
BglI	GCCNNNNNGGC	2 cut(s)	35, 256
BisI	GCNGC	5 cut(s)	75, 248, 266, 290, 367
BlsI	GCNGC	5 cut(s)	76, 249, 267, 291, 368
Bme1390I	CCNGG	5 cut(s)	115, 116, 198, 296, 297
Bme18I	GGWCC	2 cut(s)	4, 118
BmeT110I	CYCGRG	3 cut(s)	114, 189, 295
BmgBI	CACGTC	2 cut(s)	226, 360
BmgT120I	GGNCC	6 cut(s)	4, 59, 106, 118, 200, 368
BmiI	GGNNCC	5 cut(s)	78, 119, 120, 201, 236
BmrFI	CCNGG	5 cut(s)	115, 116, 198, 296, 297
BpiI	GAAGAC	3 cut(s)	151, 164, 342
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpuMI	CCSGG	5 cut(s)	115, 116, 198, 296, 297
BsaJI	CCNNGG	5 cut(s)	102, 114, 148, 197, 295
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 114, 115, 154, 296
Bse3DI	GCAATG	1 cut(s)	260
BseDI	CCNNGG	5 cut(s)	102, 114, 148, 197, 295
BseLI	CCNNNNNNNGG	5 cut(s)	73, 114, 115, 154, 296
BseMI	GCAATG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	277
Bsh1236I	CGCG	2 cut(s)	52, 292
BshFI	GGCC	6 cut(s)	38, 61, 107, 202, 259, 369
BsiHKCI	CYCGRG	3 cut(s)	114, 189, 295
BsiSI	CCGG	3 cut(s)	115, 197, 296
BslFI	GGGAC	3 cut(s)	104, 312, 381
BslI	CCNNNNNNNGG	5 cut(s)	73, 114, 115, 154, 296
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	3 cut(s)	104, 312, 381
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	6 cut(s)	38, 61, 107, 202, 259, 369
BsoBI	CYCGRG	3 cut(s)	114, 189, 295
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	6 cut(s)	12, 74, 232, 248, 290, 366
BspANI	GGCC	6 cut(s)	38, 61, 107, 202, 259, 369
BspFNI	CGCG	2 cut(s)	52, 292
BspLI	GGNNCC	5 cut(s)	78, 119, 120, 201, 236
BspMI	ACCTGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	260
BssECI	CCNNGG	5 cut(s)	102, 114, 148, 197, 295
BssMI	GATC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	68, 157
BstDEI	CTNAG	1 cut(s)	278
BstFNI	CGCG	2 cut(s)	52, 292
BstHHI	GCGC	3 cut(s)	52, 294, 324
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 58, 256, 265, 385
BstSCI	CCNGG	5 cut(s)	113, 114, 196, 294, 295
BstUI	CGCG	2 cut(s)	52, 292
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	3 cut(s)	151, 164, 342
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	6 cut(s)	38, 61, 107, 202, 259, 369
BtrI	CACGTC	2 cut(s)	226, 360
BveI	ACCTGC	1 cut(s)	327
CfoI	GCGC	3 cut(s)	52, 294, 324
Cfr13I	GGNCC	6 cut(s)	4, 59, 106, 118, 200, 368
Cfr9I	CCCGGG	2 cut(s)	114, 295
Csp6I	GTAC	3 cut(s)	85, 97, 153
CviQI	GTAC	3 cut(s)	85, 97, 153
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DraIII	CACNNNGTG	1 cut(s)	363
EaeI	YGGCCR	2 cut(s)	36, 257
Eco130I	CCWWGG	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	4, 118
Eco88I	CYCGRG	3 cut(s)	114, 189, 295
EcoO109I	RGGNCCY	4 cut(s)	59, 106, 118, 200
EcoT14I	CCWWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	102
FaiI	YATR	1 cut(s)	403
FaqI	GGGAC	3 cut(s)	104, 312, 381
FauI	CCCGC	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	75, 248, 266, 290, 367
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	5 cut(s)	75, 248, 266, 290, 367
FspI	TGCGCA	1 cut(s)	323
GlaI	GCGC	3 cut(s)	51, 293, 323
GluI	GCNGC	5 cut(s)	75, 248, 266, 290, 367
HaeIII	GGCC	6 cut(s)	38, 61, 107, 202, 259, 369
HapII	CCGG	3 cut(s)	115, 197, 296
HhaI	GCGC	3 cut(s)	52, 294, 324
Hin6I	GCGC	3 cut(s)	50, 292, 322
HinP1I	GCGC	3 cut(s)	50, 292, 322
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	41, 181
HpaII	CCGG	3 cut(s)	115, 197, 296
HphI	GGTGA	2 cut(s)	56, 308
Hpy166II	GTNNAC	2 cut(s)	185, 223
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	2 cut(s)	305, 330
Hpy8I	GTNNAC	2 cut(s)	185, 223
Hpy99I	CGWCG	3 cut(s)	72, 230, 364
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	68, 157
HpyCH4IV	ACGT	2 cut(s)	225, 359
HpyCH4V	TGCA	1 cut(s)	265
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 58, 256, 265, 385
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	2 cut(s)	225, 359
HspAI	GCGC	3 cut(s)	50, 292, 322
KflI	GGGWCCC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	128, 210, 309, 332
Lsp1109I	GCAGC	1 cut(s)	277
MaeII	ACGT	2 cut(s)	225, 359
MaeIII	GTNAC	2 cut(s)	241, 314
MalI	GATC	1 cut(s)	309
MbiI	CCGCTC	1 cut(s)	232
MboI	GATC	1 cut(s)	307
MboII	GAAGA	5 cut(s)	151, 164, 167, 266, 347
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	259
MluCI	AATT	5 cut(s)	21, 131, 270, 283, 372
MluNI	TGGCCA	1 cut(s)	259
MlyI	GAGTC	2 cut(s)	50, 190
Mox20I	TGGCCA	1 cut(s)	259
MscI	TGGCCA	1 cut(s)	259
MslI	CAYNNNNRTG	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	259
MspI	CCGG	3 cut(s)	115, 197, 296
MspR9I	CCNGG	5 cut(s)	115, 116, 198, 296, 297
Mva1269I	GAATGC	1 cut(s)	14
MvnI	CGCG	2 cut(s)	52, 292
MwoI	GCNNNNNNNGC	5 cut(s)	35, 58, 256, 265, 385
NciI	CCSGG	5 cut(s)	115, 116, 198, 296, 297
NdeII	GATC	1 cut(s)	307
NlaIV	GGNNCC	5 cut(s)	78, 119, 120, 201, 236
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	314
NsbI	TGCGCA	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	189
PaqCI	CACCTGC	1 cut(s)	327
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PctI	GAATGC	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	76, 249, 267, 291, 368
PleI	GAGTC	2 cut(s)	49, 189
PpsI	GAGTC	2 cut(s)	49, 189
PpuMI	RGGWCCY	1 cut(s)	118
Psp5II	RGGWCCY	1 cut(s)	118
PspN4I	GGNNCC	5 cut(s)	78, 119, 120, 201, 236
PspPI	GGNCC	6 cut(s)	4, 59, 106, 118, 200, 368
PspPPI	RGGWCCY	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	3 cut(s)	86, 98, 154
RsaNI	GTAC	3 cut(s)	85, 97, 153
RseI	CAYNNNNRTG	1 cut(s)	69
SatI	GCNGC	5 cut(s)	75, 248, 266, 290, 367
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	6 cut(s)	4, 59, 106, 118, 200, 368
SchI	GAGTC	2 cut(s)	50, 190
ScrFI	CCNGG	5 cut(s)	115, 116, 198, 296, 297
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	190, 228, 321, 362, 394
Sfr274I	CTCGAG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	4, 118
SlaI	CTCGAG	1 cut(s)	189
SmaI	CCCGGG	2 cut(s)	116, 297
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	5 cut(s)	21, 131, 270, 283, 372
SsiI	CCGC	6 cut(s)	12, 74, 232, 248, 290, 366
StyD4I	CCNGG	5 cut(s)	113, 114, 196, 294, 295
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	68, 157
TaiI	ACGT	2 cut(s)	228, 362
TaqI	TCGA	3 cut(s)	32, 190, 228
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	5 cut(s)	21, 131, 270, 283, 372
TauI	GCSGC	4 cut(s)	77, 250, 292, 369
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	2 cut(s)	72, 208
TspMI	CCCGGG	2 cut(s)	114, 295
VpaK11BI	GGWCC	2 cut(s)	4, 118
XapI	RAATTY	2 cut(s)	131, 283
XhoI	CTCGAG	1 cut(s)	189
XmaI	CCCGGG	2 cut(s)	114, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.