Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Reverse (-)

14804069 .. 14804341

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG165300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGACCAACCCAGATTCGTAATCGAAGCCTCAGAGGCCGAGTCAATGGCCAAGAAGAAGGGCCTCACTGTCGTCCAGCTCCTCTCGTCCTTCGTCGAGCATGACAAGGCCCTCTCCCTGGTCCTCATCTCCAAATTCCCCGTCGGAGCCCTCGGGTACGGGTCCTCAAGTTGGGTCTTCTTTGAAGTCAACCTCGAGTTCCCGGGCCTCCCCCTCCACTACTACGTCCACGCCGAGCAGTTCCTCGTCACCAATCTCTCAATCCAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

90

Amino Acids

10.02

Weight (kDa)

5.46

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	118, 171
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Ama87I	CYCGRG	3 cut(s)	152, 194, 202
AoxI	GGCC	5 cut(s)	36, 48, 61, 108, 205
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspS9I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
AsuC2I	CCSGG	2 cut(s)	203, 204
AsuHPI	GGTGA	1 cut(s)	241
AvaI	CYCGRG	3 cut(s)	152, 194, 202
AvaII	GGWCC	3 cut(s)	4, 121, 162
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	119
BcnI	CCSGG	2 cut(s)	203, 204
BglI	GCCNNNNNGGC	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	119, 203, 204
Bme18I	GGWCC	3 cut(s)	4, 121, 162
BmeT110I	CYCGRG	3 cut(s)	152, 194, 202
BmgT120I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
BmiI	GGNNCC	2 cut(s)	148, 163
BmrFI	CCNGG	3 cut(s)	119, 203, 204
BpiI	GAAGAC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	151
BpuMI	CCSGG	2 cut(s)	203, 204
BsaJI	CCNNGG	3 cut(s)	117, 151, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 171
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	117, 151, 202
BseLI	CCNNNNNNNGG	2 cut(s)	118, 171
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	71
BshFI	GGCC	5 cut(s)	38, 50, 63, 110, 207
BsiHKCI	CYCGRG	3 cut(s)	152, 194, 202
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	2 cut(s)	118, 171
BsnI	GGCC	5 cut(s)	38, 50, 63, 110, 207
BsoBI	CYCGRG	3 cut(s)	152, 194, 202
Bsp1286I	GDGCHC	1 cut(s)	151
BspANI	GGCC	5 cut(s)	38, 50, 63, 110, 207
BspCNI	CTCAG	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	148, 163
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	117, 151, 202
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	117, 201, 202
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	5 cut(s)	38, 50, 63, 110, 207
BtsIMutI	CAGTG	1 cut(s)	66
Cfr13I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
Cfr9I	CCCGGG	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	8 cut(s)	29, 38, 50, 63, 79, 110, 149, 207
CviKI_1	RGCY	8 cut(s)	29, 38, 50, 63, 79, 110, 149, 207
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	3 cut(s)	4, 121, 162
Eco88I	CYCGRG	3 cut(s)	152, 194, 202
EcoO109I	RGGNCCY	3 cut(s)	61, 109, 162
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	151
FaeI	CATG	1 cut(s)	104
FaiI	YATR	1 cut(s)	102
FatI	CATG	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	151
HaeIII	GGCC	5 cut(s)	38, 50, 63, 110, 207
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	15, 41
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	190, 229
Hpy188I	TCNGA	2 cut(s)	34, 146
Hpy8I	GTNNAC	2 cut(s)	190, 229
Hpy99I	CGWCG	2 cut(s)	98, 146
HpyAV	CCTTC	2 cut(s)	52, 100
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	84, 146
LpnPI	CCDG	5 cut(s)	25, 89, 104, 131, 216
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	67, 169
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	1 cut(s)	134
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	124
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	50
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	3 cut(s)	119, 203, 204
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	2 cut(s)	203, 204
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	148, 163
NmeAIII	GCCGAG	2 cut(s)	64, 259
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	148, 163
PspPI	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
PspPPI	RGGWCCY	1 cut(s)	162
PspXI	VCTCGAGB	1 cut(s)	194
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
Sau96I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	3 cut(s)	119, 203, 204
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	3 cut(s)	81, 195, 228
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	4, 121, 162
SlaI	CTCGAG	1 cut(s)	194
SmaI	CCCGGG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	166, 194
SmoI	CTYRAG	2 cut(s)	166, 194
Sse9I	AATT	1 cut(s)	134
StyD4I	CCNGG	3 cut(s)	117, 201, 202
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	3 cut(s)	24, 96, 195
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	15
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspMI	CCCGGG	1 cut(s)	202
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	3 cut(s)	4, 121, 162
XapI	RAATTY	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	194
XmaI	CCCGGG	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.