Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Reverse (-)

11751562 .. 11754443

Gene Structure 2882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG065900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGCATTAATGCTGGAGATGATAATTTGCAGAATCTGCAAATGCAAAACGGGAATTTGGTTGAATCAAATCAGGTCGACTCGGAACACCACCTCTCCCCTAAAATAGATCGACCCAGATTCGTAATCGAAGCCTCGGAGGCCAAGTCAATGGCCAAGCAGAAGGGACTCACTGTCGTCCAGCTTCTCTCGTCCTTCGTCGAACCCTCCATGGCCCTCGCCCGGGTCCCTATCTCCAAATTCCCCAACGGAGCCCTCGGGTACTGGTCTTCAGGTTGGGTCTTCTTCGAAGTCAACCTGGAGTTCCCGGGCCTCCCCCTCCACTACTTCGTCCACGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

114

Amino Acids

12.72

Weight (kDa)

5.48

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	55, 239
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	222, 223
AgsI	TTSAA	1 cut(s)	65
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AlwNI	CAGNNNCTG	1 cut(s)	37
Ama87I	CYCGRG	3 cut(s)	222, 257, 307
AoxI	GGCC	4 cut(s)	141, 153, 213, 310
ApoI	RAATTY	2 cut(s)	55, 239
AseI	ATTAAT	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	214, 226, 310
AsuC2I	CCSGG	4 cut(s)	223, 224, 308, 309
AsuII	TTCGAA	1 cut(s)	288
AvaI	CYCGRG	3 cut(s)	222, 257, 307
AvaII	GGWCC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	256
BbsI	GAAGAC	2 cut(s)	261, 274
BciT130I	CCWGG	1 cut(s)	299
BcnI	CCSGG	4 cut(s)	223, 224, 308, 309
BglI	GCCNNNNNGGC	1 cut(s)	140
Bme1390I	CCNGG	5 cut(s)	223, 224, 299, 308, 309
Bme18I	GGWCC	1 cut(s)	226
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmeT110I	CYCGRG	3 cut(s)	222, 257, 307
BmgT120I	GGNCC	3 cut(s)	214, 226, 310
BmiI	GGNNCC	3 cut(s)	227, 228, 253
BmrFI	CCNGG	5 cut(s)	223, 224, 299, 308, 309
BpiI	GAAGAC	2 cut(s)	261, 274
BpmI	CTGGAG	2 cut(s)	36, 320
Bpu14I	TTCGAA	1 cut(s)	288
BpuMI	CCSGG	4 cut(s)	223, 224, 308, 309
BsaJI	CCNNGG	5 cut(s)	135, 210, 222, 256, 307
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 223
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	5 cut(s)	135, 210, 222, 256, 307
BseLI	CCNNNNNNNGG	2 cut(s)	222, 223
BseNI	ACTGG	1 cut(s)	269
BshFI	GGCC	4 cut(s)	143, 155, 215, 312
BsiHKCI	CYCGRG	3 cut(s)	222, 257, 307
BsiSI	CCGG	2 cut(s)	223, 308
BslFI	GGGAC	2 cut(s)	180, 212
BslI	CCNNNNNNNGG	2 cut(s)	222, 223
BsmFI	GGGAC	2 cut(s)	180, 212
BsnI	GGCC	4 cut(s)	143, 155, 215, 312
BsoBI	CYCGRG	3 cut(s)	222, 257, 307
Bsp119I	TTCGAA	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	109
Bsp19I	CCATGG	1 cut(s)	210
BspANI	GGCC	4 cut(s)	143, 155, 215, 312
BspLI	GGNNCC	3 cut(s)	227, 228, 253
BspT104I	TTCGAA	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	5 cut(s)	135, 210, 222, 256, 307
BssMI	GATC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	175
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	288
BstDSI	CCRYGG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 140
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	5 cut(s)	221, 222, 297, 306, 307
BstV2I	GAAGAC	2 cut(s)	261, 274
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	143, 155, 215, 312
BtgI	CCRYGG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	214, 226, 310
Cfr9I	CCCGGG	2 cut(s)	222, 307
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	134, 143, 155, 184, 215, 254, 312
CviKI_1	RGCY	7 cut(s)	134, 143, 155, 184, 215, 254, 312
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DriI	GACNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	3 cut(s)	222, 257, 307
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	214
FaiI	YATR	1 cut(s)	212
FaqI	GGGAC	2 cut(s)	180, 212
FatI	CATG	1 cut(s)	210
FblI	GTMKAC	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	256
GsuI	CTGGAG	2 cut(s)	36, 320
HaeIII	GGCC	4 cut(s)	143, 155, 215, 312
HapII	CCGG	2 cut(s)	223, 308
Hin1II	CATG	1 cut(s)	214
HincII	GTYRAC	2 cut(s)	79, 295
HindII	GTYRAC	2 cut(s)	79, 295
HinfI	GANTC	5 cut(s)	34, 65, 80, 120, 168
HpaII	CCGG	2 cut(s)	223, 308
Hpy166II	GTNNAC	3 cut(s)	79, 295, 334
Hpy188I	TCNGA	2 cut(s)	85, 139
Hpy8I	GTNNAC	3 cut(s)	79, 295, 334
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	157, 205
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	6, 31, 40, 46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 140
Hsp92II	CATG	1 cut(s)	214
KflI	GGGWCCC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	9 cut(s)	59, 130, 194, 236, 250, 258, 284, 311, 321
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	3 cut(s)	261, 274, 277
MhlI	GDGCHC	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	3 cut(s)	25, 55, 239
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	74, 162
MnlI	CCTC	8 cut(s)	104, 133, 145, 217, 227, 266, 323, 329
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	2 cut(s)	223, 308
MspR9I	CCNGG	5 cut(s)	223, 224, 299, 308, 309
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	37, 140
NciI	CCSGG	4 cut(s)	223, 224, 308, 309
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	3 cut(s)	227, 228, 253
NspV	TTCGAA	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	34, 65, 120
PleI	GAGTC	2 cut(s)	74, 162
PpsI	GAGTC	2 cut(s)	74, 162
PpuMI	RGGWCCY	1 cut(s)	226
PshBI	ATTAAT	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	227, 228, 253
PspPI	GGNCC	3 cut(s)	214, 226, 310
PspPPI	RGGWCCY	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	37
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	3 cut(s)	214, 226, 310
SchI	GAGTC	2 cut(s)	74, 162
ScrFI	CCNGG	5 cut(s)	223, 224, 299, 308, 309
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	5 cut(s)	78, 96, 186, 277, 300
SfuI	TTCGAA	1 cut(s)	288
SinI	GGWCC	1 cut(s)	226
SmaI	CCCGGG	2 cut(s)	224, 309
Sse9I	AATT	3 cut(s)	25, 55, 239
StyD4I	CCNGG	5 cut(s)	221, 222, 297, 306, 307
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	5 cut(s)	78, 112, 129, 201, 288
TasI	AATT	3 cut(s)	25, 55, 239
TfiI	GAWTC	3 cut(s)	34, 65, 120
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	264
TspMI	CCCGGG	2 cut(s)	222, 307
TspRI	CASTG	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	2 cut(s)	55, 239
XmaI	CCCGGG	2 cut(s)	222, 307
XmiI	GTMKAC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.