Rroxscaffold_6G00413140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013761
Physical Location & Seq
Forward (+)
35583396 .. 35591078
7683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413140.1

Sequence Viewer

Length: 249 bp
ATGCAAGTTTTTCTACCGACCCGACCCGGACCCGGCCGACCCGACCCGGCCGTAACTTCCAGCTCCGGCCACCTCCGGCGACGAAACTTCACCAGCAGGGTCGCCTCCTCCTTCCGATCGTCCCTGTGGTGGTCGCCGTCGACGATTCGAGCCCACGGTGGTGCAGCAAGGCGGCGCCAGTTTGAGTTTTCTGACCCGGCCGGAAATCGCAGCTCCGACGTCGGCACGACTTCGGGTTTCTTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

8.95

Weight (kDa)

12.0

Isoelectric Point (pI)

79.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 140
AciI CCGC 1 cut(s) 172
AcoI YGGCCR 4 cut(s) 34, 48, 67, 198
AcyI GRCGYC 2 cut(s) 175, 219
AfiI CCNNNNNNNGG 2 cut(s) 32, 129
AleI CACNNNNGTG 1 cut(s) 159
AluBI AGCT 2 cut(s) 63, 213
AluI AGCT 2 cut(s) 63, 213
AoxI GGCC 4 cut(s) 34, 48, 67, 198
ApeKI GCWGC 2 cut(s) 164, 210
AspLEI GCGC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 4 cut(s) 27, 33, 47, 197
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 174
BanII GRGCYC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 176, 222
BceAI ACGGC 2 cut(s) 35, 121
BcnI CCSGG 4 cut(s) 27, 33, 47, 197
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 3 cut(s) 165, 173, 211
BlsI GCNGC 3 cut(s) 166, 174, 212
Bme1390I CCNGG 4 cut(s) 27, 33, 47, 197
Bme18I GGWCC 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 31, 176
BmrFI CCNGG 4 cut(s) 27, 33, 47, 197
BpuMI CCSGG 4 cut(s) 27, 33, 47, 197
BsaHI GRCGYC 2 cut(s) 175, 219
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 129
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 32, 129
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 97
BseX3I CGGCCG 3 cut(s) 34, 48, 198
BseXI GCAGC 2 cut(s) 176, 222
BsgI GTGCAG 1 cut(s) 183
Bsh1285I CGRYCG 4 cut(s) 37, 51, 119, 201
BshFI GGCC 4 cut(s) 36, 50, 69, 200
BshNI GGYRCC 1 cut(s) 174
BsiEI CGRYCG 4 cut(s) 37, 51, 119, 201
BsiSI CCGG 7 cut(s) 27, 33, 47, 66, 76, 197, 201
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 32, 129
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 4 cut(s) 36, 50, 69, 200
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 1 cut(s) 172
BspANI GGCC 4 cut(s) 36, 50, 69, 200
BspLI GGNNCC 2 cut(s) 31, 176
BspT107I GGYRCC 1 cut(s) 174
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 2 cut(s) 175, 219
Bst4CI ACNGT 1 cut(s) 158
BstACI GRCGYC 2 cut(s) 175, 219
BstDSI CCRYGG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMCI CGRYCG 4 cut(s) 37, 51, 119, 201
BstSCI CCNGG 4 cut(s) 25, 31, 45, 195
BstV1I GCAGC 2 cut(s) 176, 222
BstZI CGGCCG 3 cut(s) 34, 48, 198
BsuRI GGCC 4 cut(s) 36, 50, 69, 200
BtgI CCRYGG 1 cut(s) 154
CfoI GCGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 29
CviJI RGCY 7 cut(s) 36, 50, 63, 69, 152, 200, 213
CviKI_1 RGCY 7 cut(s) 36, 50, 63, 69, 152, 200, 213
DinI GGCGCC 1 cut(s) 176
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 4 cut(s) 34, 48, 67, 198
EagI CGGCCG 3 cut(s) 34, 48, 198
EclXI CGGCCG 3 cut(s) 34, 48, 198
Eco24I GRGCYC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 29
Eco52I CGGCCG 3 cut(s) 34, 48, 198
EcoT38I GRGCYC 1 cut(s) 154
EgeI GGCGCC 1 cut(s) 176
EheI GGCGCC 1 cut(s) 176
FaqI GGGAC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 3 cut(s) 165, 173, 211
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 165, 173, 211
GlaI GCGC 1 cut(s) 176
GluI GCNGC 3 cut(s) 165, 173, 211
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 4 cut(s) 36, 50, 69, 200
HapII CCGG 7 cut(s) 27, 33, 47, 66, 76, 197, 201
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 2 cut(s) 175, 219
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 1 cut(s) 145
HpaII CCGG 7 cut(s) 27, 33, 47, 66, 76, 197, 201
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 3 cut(s) 116, 193, 217
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 5 cut(s) 84, 142, 145, 221, 224
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 2 cut(s) 4, 164
HpySE526I ACGT 1 cut(s) 219
Hsp92I GRCGYC 2 cut(s) 175, 219
HspAI GCGC 1 cut(s) 175
KasI GGCGCC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 68, 218
Lsp1109I GCAGC 2 cut(s) 176, 222
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 154
Mly113I GGCGCC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 3 cut(s) 83, 115, 118
MslI CAYNNNNRTG 1 cut(s) 159
MspI CCGG 7 cut(s) 27, 33, 47, 66, 76, 197, 201
MspR9I CCNGG 4 cut(s) 27, 33, 47, 197
NarI GGCGCC 1 cut(s) 175
NciI CCSGG 4 cut(s) 27, 33, 47, 197
NdeII GATC 1 cut(s) 116
NlaIV GGNNCC 2 cut(s) 31, 176
OliI CACNNNNGTG 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 166, 174, 212
Ple19I CGATCG 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 31, 176
PspPI GGNCC 1 cut(s) 29
PvuI CGATCG 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 159
SalI GTCGAC 1 cut(s) 139
SatI GCNGC 3 cut(s) 165, 173, 211
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 4 cut(s) 27, 33, 47, 197
SduI GDGCHC 1 cut(s) 154
SetI ASST 4 cut(s) 65, 75, 215, 222
SfoI GGCGCC 1 cut(s) 176
SgrDI CGTCGACG 1 cut(s) 139
SinI GGWCC 1 cut(s) 29
SmiMI CAYNNNNRTG 1 cut(s) 159
SsiI CCGC 1 cut(s) 172
SspDI GGCGCC 1 cut(s) 174
StyD4I CCNGG 4 cut(s) 25, 31, 45, 195
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 140, 148
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 1 cut(s) 145
TseI GCWGC 2 cut(s) 164, 210
VpaK11BI GGWCC 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 140
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.