Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Forward (+)

6580815 .. 6581045

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG078600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGACCGACCCAGATTCGTAATTGAAGCCTCGGAGGCGGAGTCAGCGGCCAAGCAGAAGGGCCTCACCGTCGTCCAGCTCCTCCCGTCCTTCGTCAAGTCCGCCAAGGACCTCGCCCGGGTCCCCATCTCCAAACTCCCCGTCGGAGCCTTCGGGTACGGGTCCTCGGGTCGGGTCTTGTTGGGGGTCAACCTCGAGTTCCCGGGCCTCCCCCTCCACTACTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

76

Amino Acids

8.14

Weight (kDa)

9.22

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	38, 47, 102
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	118, 171
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Ama87I	CYCGRG	4 cut(s)	117, 166, 194, 202
AoxI	GGCC	3 cut(s)	48, 61, 205
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspS9I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
AsuC2I	CCSGG	4 cut(s)	118, 119, 203, 204
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	4 cut(s)	117, 166, 194, 202
AvaII	GGWCC	4 cut(s)	4, 109, 121, 162
BccI	CCATC	1 cut(s)	134
BcnI	CCSGG	4 cut(s)	118, 119, 203, 204
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	4 cut(s)	118, 119, 203, 204
Bme18I	GGWCC	4 cut(s)	4, 109, 121, 162
BmeT110I	CYCGRG	4 cut(s)	117, 166, 194, 202
BmgT120I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
BmiI	GGNNCC	4 cut(s)	122, 123, 148, 163
BmrFI	CCNGG	4 cut(s)	118, 119, 203, 204
BpuMI	CCSGG	4 cut(s)	118, 119, 203, 204
BsaJI	CCNNGG	5 cut(s)	30, 105, 117, 165, 202
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 171
BseDI	CCNNGG	5 cut(s)	30, 105, 117, 165, 202
BseLI	CCNNNNNNNGG	2 cut(s)	118, 171
BseRI	GAGGAG	1 cut(s)	71
BshFI	GGCC	3 cut(s)	50, 63, 207
BsiHKCI	CYCGRG	4 cut(s)	117, 166, 194, 202
BsiSI	CCGG	2 cut(s)	118, 203
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	118, 171
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	50, 63, 207
BsoBI	CYCGRG	4 cut(s)	117, 166, 194, 202
BspACI	CCGC	3 cut(s)	38, 47, 102
BspANI	GGCC	3 cut(s)	50, 63, 207
BspLI	GGNNCC	4 cut(s)	122, 123, 148, 163
BssECI	CCNNGG	5 cut(s)	30, 105, 117, 165, 202
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	70
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 44
BstSCI	CCNGG	4 cut(s)	116, 117, 201, 202
BsuRI	GGCC	3 cut(s)	50, 63, 207
Cfr13I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
Cfr9I	CCCGGG	2 cut(s)	117, 202
Csp6I	GTAC	1 cut(s)	157
CviJI	RGCY	6 cut(s)	29, 50, 63, 79, 149, 207
CviKI_1	RGCY	6 cut(s)	29, 50, 63, 79, 149, 207
CviQI	GTAC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	48
EciI	GGCGGA	2 cut(s)	53, 91
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	4 cut(s)	4, 109, 121, 162
Eco88I	CYCGRG	4 cut(s)	117, 166, 194, 202
EcoO109I	RGGNCCY	4 cut(s)	61, 109, 121, 162
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaqI	GGGAC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	50, 63, 207
HapII	CCGG	2 cut(s)	118, 203
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	15, 41
HpaII	CCGG	2 cut(s)	118, 203
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	34, 146, 226
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	2 cut(s)	74, 146
HpyAV	CCTTC	3 cut(s)	52, 100, 160
HpyCH4III	ACNGT	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 44
KflI	GGGWCCC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	84, 146
LpnPI	CCDG	4 cut(s)	25, 89, 131, 216
MluCI	AATT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	9 cut(s)	28, 40, 74, 92, 122, 175, 203, 218, 224
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	118, 203
MspR9I	CCNGG	4 cut(s)	118, 119, 203, 204
MwoI	GCNNNNNNNGC	2 cut(s)	35, 44
NciI	CCSGG	4 cut(s)	118, 119, 203, 204
NlaIV	GGNNCC	4 cut(s)	122, 123, 148, 163
PaeR7I	CTCGAG	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	3 cut(s)	109, 121, 162
Psp5II	RGGWCCY	3 cut(s)	109, 121, 162
PspN4I	GGNNCC	4 cut(s)	122, 123, 148, 163
PspPI	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
PspPPI	RGGWCCY	3 cut(s)	109, 121, 162
PspXI	VCTCGAGB	1 cut(s)	194
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	1 cut(s)	48
Sau96I	GGNCC	6 cut(s)	4, 61, 109, 121, 162, 205
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	4 cut(s)	118, 119, 203, 204
SetI	ASST	3 cut(s)	81, 114, 195
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	4 cut(s)	4, 109, 121, 162
SlaI	CTCGAG	1 cut(s)	194
SmaI	CCCGGG	2 cut(s)	119, 204
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	3 cut(s)	38, 47, 102
StyD4I	CCNGG	4 cut(s)	116, 117, 201, 202
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	15
TspMI	CCCGGG	2 cut(s)	117, 202
VpaK11BI	GGWCC	4 cut(s)	4, 109, 121, 162
XhoI	CTCGAG	1 cut(s)	194
XmaI	CCCGGG	2 cut(s)	117, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.