Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003724.1

Orthogroup ID

OG0013761

Physical Location & Seq

Genomic Coordinates Forward (+)

7511 .. 7870

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003724.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggaccgacccagattcgtaattgaagcctcggaggcggagtcagcggccaagcagaagggcctcaccgtcgtccagctcctcccgtccttcgtcaagtccgccaaggacctcgcccgggtccccatctccaaactccccgtcggagccttcgggtacgggtcctcgggtcgggtcttgttgggggtcaacctcgagttcctcgtcaccaatctctcgatccagtcggagccccgcctcgaatacgtcgccgtctcggccgccaattctttcaggacatcaagatcctcatcacctccgccgacaaaaaacaggtcgagtgcaacatgcatagattctcaaataagcaaaataatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0047844 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

dCMP_cyt_deam_1 dCMP_cyt_deam_2

Protein Analysis

119

Amino Acids

12.74

Weight (kDa)

9.91

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0396261 RchiOBHm_Chr6g0266291
rosa_laevigata	RLG00000020491
rosa_multiflora	Rmu_co8272987.1_g000001 Rmu_sc0002132.1_g000024 Rmu_sc0003724.1_g000002 Rmu_sc0005469.1_g000001 Rmu_sc0010019.1_g000006 Rmu_sc0010408.1_g000010
rosa_roxburghii	Rroxscaffold_2G00099230 Rroxscaffold_4G00312180 Rroxscaffold_5G00339090 Rroxscaffold_5G00369990 Rroxscaffold_6G00413140
rosa_samantha	Rh2AG078600 Rh2DG077600 Rh4BG065900 Rh7DG165300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	38, 47, 102, 235, 261, 299
AclWI	GGATC	2 cut(s)	214, 279
AcoI	YGGCCR	2 cut(s)	48, 258
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	118, 171
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	2 cut(s)	214, 279
Ama87I	CYCGRG	3 cut(s)	117, 166, 194
AoxI	GGCC	3 cut(s)	48, 61, 258
ArsI	GACNNNNNNTTYG	4 cut(s)	126, 158, 299, 331
AspS9I	GGNCC	5 cut(s)	4, 61, 109, 121, 162
AsuC2I	CCSGG	2 cut(s)	118, 119
AsuHPI	GGTGA	3 cut(s)	58, 199, 285
AvaI	CYCGRG	3 cut(s)	117, 166, 194
AvaII	GGWCC	4 cut(s)	4, 109, 121, 162
BanII	GRGCYC	1 cut(s)	234
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	236
BcnI	CCSGG	2 cut(s)	118, 119
BcoDI	GTCTC	1 cut(s)	259
BglI	GCCNNNNNGGC	2 cut(s)	35, 257
BisI	GCNGC	2 cut(s)	48, 261
BlsI	GCNGC	2 cut(s)	49, 262
Bme1390I	CCNGG	2 cut(s)	118, 119
Bme18I	GGWCC	4 cut(s)	4, 109, 121, 162
BmeT110I	CYCGRG	3 cut(s)	117, 166, 194
BmgT120I	GGNCC	5 cut(s)	4, 61, 109, 121, 162
BmiI	GGNNCC	5 cut(s)	122, 123, 148, 163, 231
BmrFI	CCNGG	2 cut(s)	118, 119
BpuMI	CCSGG	2 cut(s)	118, 119
BsaBI	GATNNNNATC	1 cut(s)	289
BsaJI	CCNNGG	4 cut(s)	30, 105, 117, 165
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 171
Bse1I	ACTGG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	289
BseDI	CCNNGG	4 cut(s)	30, 105, 117, 165
BseJI	GATNNNNATC	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	118, 171
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	71
BseX3I	CGGCCG	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	50, 63, 260
BsiEI	CGRYCG	1 cut(s)	261
BsiHKCI	CYCGRG	3 cut(s)	117, 166, 194
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	118, 171
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	50, 63, 260
BsoBI	CYCGRG	3 cut(s)	117, 166, 194
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	219, 284
BspACI	CCGC	6 cut(s)	38, 47, 102, 235, 261, 299
BspANI	GGCC	3 cut(s)	50, 63, 260
BspLI	GGNNCC	5 cut(s)	122, 123, 148, 163, 231
BspPI	GGATC	2 cut(s)	214, 279
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	4 cut(s)	30, 105, 117, 165
BssMI	GATC	2 cut(s)	219, 284
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	70
BstKTI	GATC	2 cut(s)	222, 287
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	2 cut(s)	219, 284
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 257
BstNSI	RCATGY	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	116, 117
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BstZI	CGGCCG	1 cut(s)	258
BsuRI	GGCC	3 cut(s)	50, 63, 260
Cfr13I	GGNCC	5 cut(s)	4, 61, 109, 121, 162
Cfr9I	CCCGGG	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	327
CviJI	RGCY	7 cut(s)	29, 50, 63, 79, 149, 232, 260
CviKI_1	RGCY	7 cut(s)	29, 50, 63, 79, 149, 232, 260
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	2 cut(s)	221, 286
DpnII	GATC	2 cut(s)	219, 284
EaeI	YGGCCR	2 cut(s)	48, 258
EagI	CGGCCG	1 cut(s)	258
EciI	GGCGGA	3 cut(s)	53, 91, 288
EclXI	CGGCCG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	4 cut(s)	4, 109, 121, 162
Eco52I	CGGCCG	1 cut(s)	258
Eco88I	CYCGRG	3 cut(s)	117, 166, 194
EcoO109I	RGGNCCY	4 cut(s)	61, 109, 121, 162
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	330
FaiI	YATR	2 cut(s)	328, 332
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	1 cut(s)	326
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	48, 261
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	48, 261
GluI	GCNGC	2 cut(s)	48, 261
HaeIII	GGCC	3 cut(s)	50, 63, 260
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	15, 41, 335
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	3 cut(s)	58, 199, 285
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	34, 146, 229
Hpy188III	TCNNGA	3 cut(s)	217, 274, 282
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	3 cut(s)	74, 146, 251
HpyAV	CCTTC	3 cut(s)	52, 100, 160
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	323, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 257
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	330
KflI	GGGWCCC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	219, 284
LmnI	GCTCC	3 cut(s)	84, 146, 229
LpnPI	CCDG	6 cut(s)	25, 89, 131, 236, 259, 298
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	221, 286
MboI	GATC	2 cut(s)	219, 284
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	3 cut(s)	21, 265, 354
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	124, 207
Mph1103I	ATGCAT	1 cut(s)	332
MseI	TTAA	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	2 cut(s)	118, 119
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 257
NciI	CCSGG	2 cut(s)	118, 119
NdeII	GATC	2 cut(s)	219, 284
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	5 cut(s)	122, 123, 148, 163, 231
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	1 cut(s)	330
PaeR7I	CTCGAG	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	15, 335
PkrI	GCNGC	2 cut(s)	49, 262
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	3 cut(s)	109, 121, 162
Psp5II	RGGWCCY	3 cut(s)	109, 121, 162
PspN4I	GGNNCC	5 cut(s)	122, 123, 148, 163, 231
PspPI	GGNCC	5 cut(s)	4, 61, 109, 121, 162
PspPPI	RGGWCCY	3 cut(s)	109, 121, 162
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	2 cut(s)	48, 261
Sau3AI	GATC	2 cut(s)	219, 284
Sau96I	GGNCC	5 cut(s)	4, 61, 109, 121, 162
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	118, 119
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	6 cut(s)	81, 114, 195, 249, 298, 317
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	4 cut(s)	4, 109, 121, 162
SlaI	CTCGAG	1 cut(s)	194
SmaI	CCCGGG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	3 cut(s)	21, 265, 354
SsiI	CCGC	6 cut(s)	38, 47, 102, 235, 261, 299
StyD4I	CCNGG	2 cut(s)	116, 117
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	4 cut(s)	195, 218, 240, 317
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	3 cut(s)	21, 265, 354
TauI	GCSGC	2 cut(s)	50, 263
TfiI	GAWTC	2 cut(s)	15, 335
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	205
Tsp45I	GTSAC	1 cut(s)	205
TspMI	CCCGGG	1 cut(s)	117
VpaK11BI	GGWCC	4 cut(s)	4, 109, 121, 162
XceI	RCATGY	1 cut(s)	330
XhoI	CTCGAG	1 cut(s)	194
XmaI	CCCGGG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.