Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007048

Physical Location & Seq

Genomic Coordinates Reverse (-)

32075672 .. 32078864

Gene Structure 3193 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCGTTTGAGAGCTATAGCAAATTTTGCACGCAATAGCATACTCTTCACTGCAAAAACCACCACCACCACCACCACCAGAAGCAAGAACCATTTGAATTTCAGGGTCCCCTTCTTCATCAGAAACCACACCATGTCTGGTTCAGATCAATCCCCTTCTTTCGACACACCCAGAATGGTGGTCAAGAAGGTCCTGGCCAAGTCCCAGAGTGAGGGTGATGGAGCTGTTGTCAGAAGAGCCATTGGAATCTCTGAGTTGAGGAACCTGGATCCGTTTCTCATGCTAGATGACTTTACAGTGTCCCCTCCTGCCGGATTTCCAGATCATCCACATAGAGGATTCGAAACTGTCACATATGTGCTACAGGGAGGCATCACTCACCAAGACTTTGCAGGGCACAAGGGTACAATTGGAGCTGGAGATGTGCAGTGGATGACCGCAGGCAGGGGAATAGTGCACTCTGAGATGCCTGCAGGAGCAGGACGCAACAATGGTTTGCAGCTTTGGATCAATTTAGCCCGCAAAGACAAAATGGTTGAGCCTAGATACCAAGAACTCCTAAGCAAGGAGATAAAGTGGGCAGAGAAAGATGGAGTTGAAGTTCGAGTGATAGCAGGAGAAACAATGGGAGTGAGCTCTCCTGTTTATACCCGAACACCAACATTTTTCTTTGACTTCACCCTTAAGCCTAAAGCTATTTTGCATCAAAGCATACCAGAAAGTTGGACCTCCTTTGTTTACATTATTGAAGGAGAAGGATTTTTTGGGTCAGCGCATGCATCAGCTCATCATATTCTGGTTCTGGGTCCTGGAGATGGCGCAAGCGTATGCAACAAGTCATCGGAGCCGCTGAGGTTTGTGTTGATCGGAGGGCAGCCAATAAATGAACCAGTGGTTCAGCATGGACCTTTTGTGATGAACACACAAGCTGAAATCGAACAAACCATTAAGGACTATCATTATGGCCAGAATGGGTTTGAAAGTGCCAAGTCTTGGCGGTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

335

Amino Acids

37.07

Weight (kDa)

8.89

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	77 - 170	1.3e-31	Pirin
Pirin_C	PF05726	224 - 324	9e-32	Pirin C-terminal cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43120 AT2G43120 AT3G59220 AT3G59260
fragaria_vesca	FvH4_4g11770 FvH4_4g11770 FvH4_4g11770 FvH4_4g11770
malus_domestica	MD04G1033300.v1.1
prunus_persica	Prupe.1G181100_v2.0.a1
pyrus_communis	pycom04g02740 pycom04g02780
rosa_chinensis	RchiOBHm_Chr4g0409021
rosa_laevigata	RLG00000008595
rosa_multiflora	Rmu_sc0000121.1_g000003 Rmu_sc0006766.1_g000003 Rmu_sc0017774.1_g000001 Rmu_sc0022473.1_g000002 Rmu_sc0026065.1_g000003
rosa_roxburghii	Rroxscaffold_5G00353500
rosa_rugosa	Rorug04G0089800
rosa_samantha	Rh4AG153500 Rh4BG151600 Rh4CG162000 Rh4DG146900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	993
AciI	CCGC	4 cut(s)	438, 520, 848, 997
AclWI	GGATC	3 cut(s)	263, 276, 515
AcoI	YGGCCR	2 cut(s)	195, 964
AcsI	RAATTY	2 cut(s)	22, 97
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	7 cut(s)	211, 311, 335, 444, 565, 815, 993
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	4 cut(s)	97, 599, 749, 980
AjnI	CCWGG	3 cut(s)	192, 264, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	747, 779
AleI	CACNNNNGTG	1 cut(s)	356
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
AluBI	AGCT	8 cut(s)	14, 224, 416, 502, 636, 695, 785, 929
AluI	AGCT	8 cut(s)	14, 224, 416, 502, 636, 695, 785, 929
Alw21I	GWGCWC	2 cut(s)	459, 638
Alw44I	GTGCAC	1 cut(s)	455
AlwI	GGATC	3 cut(s)	263, 276, 515
AoxI	GGCC	2 cut(s)	195, 964
ApaLI	GTGCAC	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	499, 874
ApoI	RAATTY	2 cut(s)	22, 97
AspLEI	GCGC	2 cut(s)	775, 821
AspS9I	GGNCC	5 cut(s)	106, 190, 726, 806, 905
AsuHPI	GGTGA	3 cut(s)	227, 371, 670
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	5 cut(s)	106, 190, 726, 806, 905
BaeGI	GKGCMC	2 cut(s)	399, 459
BalI	TGGCCA	2 cut(s)	197, 966
BamHI	GGATCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	638
Bbv12I	GWGCWC	2 cut(s)	459, 638
BbvCI	CCTCAGC	1 cut(s)	851
BbvI	GCAGC	2 cut(s)	511, 886
BccI	CCATC	3 cut(s)	212, 584, 809
BciT130I	CCWGG	3 cut(s)	194, 266, 810
BfaI	CTAG	2 cut(s)	284, 543
BfmI	CTRYAG	3 cut(s)	15, 362, 471
BfrI	CTTAAG	1 cut(s)	683
BisI	GCNGC	3 cut(s)	500, 848, 875
BlsI	GCNGC	3 cut(s)	501, 849, 876
Bme1390I	CCNGG	3 cut(s)	194, 266, 810
Bme18I	GGWCC	5 cut(s)	106, 190, 726, 806, 905
BmgT120I	GGNCC	5 cut(s)	106, 190, 726, 806, 905
BmiI	GGNNCC	6 cut(s)	107, 108, 263, 270, 807, 846
BmrFI	CCNGG	3 cut(s)	194, 266, 810
BmsI	GCATC	4 cut(s)	381, 456, 712, 788
BpmI	CTGGAG	2 cut(s)	438, 831
Bpu10I	CCTNAGC	2 cut(s)	560, 851
Bpu14I	TTCGAA	1 cut(s)	342
BsaXI	ACNNNNNCTCC	6 cut(s)	213, 243, 560, 585, 590, 615
Bsc4I	CCNNNNNNNGG	7 cut(s)	211, 311, 335, 444, 565, 815, 993
Bse1I	ACTGG	1 cut(s)	890
BseBI	CCWGG	3 cut(s)	194, 266, 810
BseGI	GGATG	2 cut(s)	325, 438
BseLI	CCNNNNNNNGG	7 cut(s)	211, 311, 335, 444, 565, 815, 993
BseMII	CTCAG	3 cut(s)	243, 453, 842
BseNI	ACTGG	1 cut(s)	890
BseSI	GKGCMC	2 cut(s)	399, 459
BseXI	GCAGC	2 cut(s)	511, 886
BsgI	GTGCAG	1 cut(s)	446
BshFI	GGCC	2 cut(s)	197, 966
BsiHKAI	GWGCWC	2 cut(s)	459, 638
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	3 cut(s)	92, 187, 286
BslI	CCNNNNNNNGG	7 cut(s)	211, 311, 335, 444, 565, 815, 993
BsmFI	GGGAC	3 cut(s)	92, 187, 286
BsnI	GGCC	2 cut(s)	197, 966
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	3 cut(s)	399, 459, 638
Bsp143I	GATC	5 cut(s)	145, 268, 322, 507, 864
BspACI	CCGC	4 cut(s)	438, 520, 848, 997
BspANI	GGCC	2 cut(s)	197, 966
BspCNI	CTCAG	3 cut(s)	244, 454, 843
BspLI	GGNNCC	6 cut(s)	107, 108, 263, 270, 807, 846
BspMAI	CTGCAG	1 cut(s)	475
BspPI	GGATC	3 cut(s)	263, 276, 515
BspQI	GCTCTTC	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	890
BssMI	GATC	5 cut(s)	145, 268, 322, 507, 864
Bst2UI	CCWGG	3 cut(s)	194, 266, 810
Bst4CI	ACNGT	2 cut(s)	298, 349
Bst6I	CTCTTC	2 cut(s)	50, 229
BstAFI	CTTAAG	1 cut(s)	683
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	6 cut(s)	31, 442, 471, 520, 777, 823
BstDEI	CTNAG	4 cut(s)	252, 462, 560, 851
BstENI	CCTNNNNNAGG	1 cut(s)	563
BstF5I	GGATG	2 cut(s)	325, 438
BstHHI	GCGC	2 cut(s)	775, 821
BstKTI	GATC	5 cut(s)	148, 271, 325, 510, 867
BstMBI	GATC	5 cut(s)	145, 268, 322, 507, 864
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	3 cut(s)	194, 266, 810
BstNSI	RCATGY	1 cut(s)	779
BstSCI	CCNGG	3 cut(s)	192, 264, 808
BstSFI	CTRYAG	3 cut(s)	15, 362, 471
BstSLI	GKGCMC	2 cut(s)	399, 459
BstV1I	GCAGC	2 cut(s)	511, 886
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	2 cut(s)	178, 723
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	197, 966
BtsCI	GGATG	2 cut(s)	325, 438
BtsI	GCAGTG	2 cut(s)	48, 434
BtsIMutI	CAGTG	4 cut(s)	48, 303, 434, 897
Cac8I	GCNNGC	6 cut(s)	31, 442, 471, 520, 777, 823
CfoI	GCGC	2 cut(s)	775, 821
Cfr13I	GGNCC	5 cut(s)	106, 190, 726, 806, 905
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	4 cut(s)	133, 280, 776, 902
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	4 cut(s)	252, 462, 560, 851
DpnI	GATC	5 cut(s)	147, 270, 324, 509, 866
DpnII	GATC	5 cut(s)	145, 268, 322, 507, 864
EaeI	YGGCCR	2 cut(s)	195, 964
Eam1104I	CTCTTC	2 cut(s)	50, 229
EarI	CTCTTC	2 cut(s)	50, 229
Ecl136II	GAGCTC	1 cut(s)	636
Eco24I	GRGCYC	1 cut(s)	638
Eco47I	GGWCC	5 cut(s)	106, 190, 726, 806, 905
Eco53kI	GAGCTC	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	636
EcoNI	CCTNNNNNAGG	1 cut(s)	563
EcoO109I	RGGNCCY	3 cut(s)	106, 190, 806
EcoRII	CCWGG	3 cut(s)	192, 264, 808
EcoT22I	ATGCAT	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	638
FaeI	CATG	4 cut(s)	136, 283, 779, 905
FaqI	GGGAC	3 cut(s)	92, 187, 286
FatI	CATG	4 cut(s)	132, 279, 775, 901
FauI	CCCGC	1 cut(s)	527
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	500, 848, 875
FokI	GGATG	2 cut(s)	312, 445
FriOI	GRGCYC	1 cut(s)	638
Fsp4HI	GCNGC	3 cut(s)	500, 848, 875
FspBI	CTAG	2 cut(s)	284, 543
GlaI	GCGC	2 cut(s)	774, 820
GluI	GCNGC	3 cut(s)	500, 848, 875
GsuI	CTGGAG	2 cut(s)	438, 831
HaeIII	GGCC	2 cut(s)	197, 966
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	1 cut(s)	492
HhaI	GCGC	2 cut(s)	775, 821
Hin1II	CATG	4 cut(s)	136, 283, 779, 905
Hin6I	GCGC	2 cut(s)	773, 819
HinP1I	GCGC	2 cut(s)	773, 819
HinfI	GANTC	2 cut(s)	246, 339
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	3 cut(s)	227, 371, 670
Hpy166II	GTNNAC	2 cut(s)	457, 739
Hpy188I	TCNGA	7 cut(s)	122, 145, 233, 253, 463, 844, 869
Hpy188III	TCNNGA	2 cut(s)	184, 320
Hpy8I	GTNNAC	2 cut(s)	457, 739
HpyAV	CCTTC	5 cut(s)	121, 165, 181, 743, 749
HpyCH4III	ACNGT	2 cut(s)	298, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	252, 462, 560, 851
Hsp92II	CATG	4 cut(s)	136, 283, 779, 905
HspAI	GCGC	2 cut(s)	773, 819
KflI	GGGWCCC	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	145, 268, 322, 507, 864
LguI	GCTCTTC	1 cut(s)	229
LmnI	GCTCC	4 cut(s)	221, 413, 476, 844
Lsp1109I	GCAGC	2 cut(s)	511, 886
LweI	GCATC	4 cut(s)	381, 456, 712, 788
MaeI	CTAG	2 cut(s)	284, 543
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	5 cut(s)	147, 270, 324, 509, 866
MboI	GATC	5 cut(s)	145, 268, 322, 507, 864
MboII	GAAGA	3 cut(s)	37, 106, 246
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	3 cut(s)	399, 459, 638
MlsI	TGGCCA	2 cut(s)	197, 966
MluCI	AATT	4 cut(s)	22, 97, 408, 511
MluNI	TGGCCA	2 cut(s)	197, 966
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	8 cut(s)	205, 252, 315, 329, 362, 739, 846, 863
Mox20I	TGGCCA	2 cut(s)	197, 966
Mph1103I	ATGCAT	1 cut(s)	781
MscI	TGGCCA	2 cut(s)	197, 966
MseI	TTAA	2 cut(s)	684, 948
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	2 cut(s)	197, 966
MspA1I	CMGCKG	1 cut(s)	850
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	3 cut(s)	194, 266, 810
MunI	CAATTG	1 cut(s)	408
MvaI	CCWGG	3 cut(s)	194, 266, 810
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	5 cut(s)	145, 268, 322, 507, 864
NlaIII	CATG	4 cut(s)	136, 283, 779, 905
NlaIV	GGNNCC	6 cut(s)	107, 108, 263, 270, 807, 846
NmuCI	GTSAC	1 cut(s)	349
NsiI	ATGCAT	1 cut(s)	781
NspI	RCATGY	1 cut(s)	779
NspV	TTCGAA	1 cut(s)	342
OliI	CACNNNNGTG	1 cut(s)	356
PaeI	GCATGC	1 cut(s)	779
PciSI	GCTCTTC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	246, 339
PflMI	CCANNNNNTGG	1 cut(s)	993
PfoI	TCCNGGA	1 cut(s)	808
PkrI	GCNGC	3 cut(s)	501, 849, 876
PpuMI	RGGWCCY	3 cut(s)	106, 190, 806
Psp124BI	GAGCTC	1 cut(s)	638
Psp5II	RGGWCCY	3 cut(s)	106, 190, 806
Psp6I	CCWGG	3 cut(s)	192, 264, 808
PspGI	CCWGG	3 cut(s)	192, 264, 808
PspN4I	GGNNCC	6 cut(s)	107, 108, 263, 270, 807, 846
PspPI	GGNCC	5 cut(s)	106, 190, 726, 806, 905
PspPPI	RGGWCCY	3 cut(s)	106, 190, 806
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	684, 948
SatI	GCNGC	3 cut(s)	500, 848, 875
Sau3AI	GATC	5 cut(s)	145, 268, 322, 507, 864
Sau96I	GGNCC	5 cut(s)	106, 190, 726, 806, 905
SbfI	CCTGCAGG	1 cut(s)	475
ScrFI	CCNGG	3 cut(s)	194, 266, 810
SdaI	CCTGCAGG	1 cut(s)	475
SduI	GDGCHC	3 cut(s)	399, 459, 638
SfaNI	GCATC	4 cut(s)	381, 456, 712, 788
SfcI	CTRYAG	3 cut(s)	15, 362, 471
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	5 cut(s)	106, 190, 726, 806, 905
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SphI	GCATGC	1 cut(s)	779
Sse8387I	CCTGCAGG	1 cut(s)	475
Sse9I	AATT	4 cut(s)	22, 97, 408, 511
SsiI	CCGC	4 cut(s)	438, 520, 848, 997
SspMI	CTAG	2 cut(s)	284, 543
SstI	GAGCTC	1 cut(s)	638
StyD4I	CCNGG	3 cut(s)	192, 264, 808
TaaI	ACNGT	2 cut(s)	298, 349
TaqI	TCGA	4 cut(s)	162, 342, 604, 936
TasI	AATT	4 cut(s)	22, 97, 408, 511
TauI	GCSGC	1 cut(s)	850
TfiI	GAWTC	2 cut(s)	246, 339
Tru1I	TTAA	2 cut(s)	684, 948
Tru9I	TTAA	2 cut(s)	684, 948
TscAI	CASTG	4 cut(s)	55, 303, 434, 897
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	2 cut(s)	499, 874
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	3 cut(s)	106, 900, 932
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	55, 303, 434, 897
Van91I	CCANNNNNTGG	1 cut(s)	993
Vha464I	CTTAAG	1 cut(s)	683
VneI	GTGCAC	1 cut(s)	455
VpaK11BI	GGWCC	5 cut(s)	106, 190, 726, 806, 905
XagI	CCTNNNNNAGG	1 cut(s)	563
XapI	RAATTY	2 cut(s)	22, 97
XceI	RCATGY	1 cut(s)	779
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XspI	CTAG	2 cut(s)	284, 543
Zsp2I	ATGCAT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.