Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Forward (+)

52307250 .. 52307643

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGATAGATGCGAAGTAGGGGACTTCGAAGCTGGAGGATACAGATGGAGACTAGTGCTCTGCCCGAATGGAAACAAGAAGAGGAATGTGGAAGGCCACATCTCTCTCTACTTGGAAATGGCTGAAGAAAAACCAATTGAGCCCGACCAAATCGTAGCAATTGATTTTAGATTGTTTTTGCTTAATCAGAAGAAGAGCAACTACTTGGTTCTTGAGGGTACGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

75

Amino Acids

8.73

Weight (kDa)

5.31

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	5 - 67	3.7e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	220
AhlI	ACTAGT	1 cut(s)	52
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	144
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	1 cut(s)	53
BfuI	GTATCC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	222
BshFI	GGCC	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	35
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	60, 144
BspANI	GGCC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	27
Bst6I	CTCTTC	2 cut(s)	74, 188
BstBAI	YACGTR	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	43
BstSNI	TACGTA	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	219
CviJI	RGCY	4 cut(s)	32, 96, 122, 142
CviKI_1	RGCY	4 cut(s)	32, 96, 122, 142
CviQI	GTAC	1 cut(s)	219
Eam1104I	CTCTTC	2 cut(s)	74, 188
EarI	CTCTTC	2 cut(s)	74, 188
Eco105I	TACGTA	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	144
FaqI	GGGAC	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	96
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	221
LguI	GCTCTTC	1 cut(s)	188
LpnPI	CCDG	1 cut(s)	18
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	221
MboII	GAAGA	4 cut(s)	91, 137, 202, 205
MfeI	CAATTG	2 cut(s)	135, 159
MhlI	GDGCHC	2 cut(s)	60, 144
MluCI	AATT	2 cut(s)	135, 159
MnlI	CCTC	3 cut(s)	29, 75, 208
MseI	TTAA	2 cut(s)	183, 226
MunI	CAATTG	2 cut(s)	135, 159
NspV	TTCGAA	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	222
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	183, 226
SduI	GDGCHC	2 cut(s)	60, 144
SetI	ASST	2 cut(s)	34, 224
SfuI	TTCGAA	1 cut(s)	27
SgeI	CNNG	8 cut(s)	45, 65, 76, 88, 124, 155, 217, 224
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SnaBI	TACGTA	1 cut(s)	222
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	2 cut(s)	135, 159
SspMI	CTAG	1 cut(s)	53
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	135, 159
Tru1I	TTAA	2 cut(s)	183, 226
Tru9I	TTAA	2 cut(s)	183, 226
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.