Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

48300578 .. 48303289

Gene Structure 2712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGAGCAAAGCTGCTAGAGAGAAATGTATAACTGAAGATGGGGAGAGAGAAAGAGTTCTGAGATCATATTCAGATTCACCACCAAGTCATTATAGTTTGAAAGTAAAATCTTTTTCGATAATGACTGAACTTTCGGTGGATGGATATGAAGCGGAGGTGTTTGAAGGTGGAGGGTACAAATGGAAACTGGTAATCTACCCAAATGGAAACAAGAAAAGAAATGTGGCAGACCATATCTCCCTCTACTTGGAACTGGCTGGAGTAAATTCACTACAGAGTGATTGCGAAATATATGCTGATTTCATATTCTTTTTACTTGATCAGAAAAAGGGCAAGTACTTAGTTGTGGTTGATATGTGGACTACTGGTTACTTTCTGATTGTTCTCCTTTTCTTTTTTTCTTTTCGAATGTTGCATTACTTTGATGCTTTTGCAAAGGAAATTTGCTTTCACCGGAGGATGTTTCGCTCGCCCAGATTTGATAAGCTTATGCCTCTTAAGGAATTTACTGATACCTCGAATGGATATCTCATTGACGACACCTGCGTGCTTGCATGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

188

Amino Acids

21.99

Weight (kDa)

6.9

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	31 - 185	4.6e-24	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	554
AciI	CCGC	1 cut(s)	155
AcsI	RAATTY	3 cut(s)	268, 444, 506
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	179, 341
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflII	CTTAAG	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	103, 167
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	3 cut(s)	14, 490, 564
AluI	AGCT	3 cut(s)	14, 490, 564
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	3 cut(s)	268, 444, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
Asp700I	GAANNNNTTC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	72, 446
AsuII	TTCGAA	1 cut(s)	409
BccI	CCATC	2 cut(s)	35, 137
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BclI	TGATCA	1 cut(s)	322
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	554
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	341
BmsI	GCATC	1 cut(s)	418
BpmI	CTGGAG	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	3 cut(s)	195, 261, 373
BseGI	GGATG	2 cut(s)	148, 468
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	3 cut(s)	195, 261, 373
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	250
Bsp119I	TTCGAA	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	65, 322
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	554
BspT104I	TTCGAA	1 cut(s)	409
BspTI	CTTAAG	1 cut(s)	500
BsrI	ACTGG	3 cut(s)	195, 261, 373
BssMI	GATC	2 cut(s)	65, 322
BstAFI	CTTAAG	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	473, 551, 555
BstDEI	CTNAG	2 cut(s)	62, 343
BstF5I	GGATG	2 cut(s)	148, 468
BstKTI	GATC	2 cut(s)	68, 325
BstMBI	GATC	2 cut(s)	65, 322
BstSFI	CTRYAG	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	148, 468
BveI	ACCTGC	1 cut(s)	554
Cac8I	GCNNGC	3 cut(s)	473, 551, 555
Csp6I	GTAC	2 cut(s)	178, 340
CviAII	CATG	1 cut(s)	558
CviJI	RGCY	4 cut(s)	14, 260, 490, 564
CviKI_1	RGCY	4 cut(s)	14, 260, 490, 564
CviQI	GTAC	2 cut(s)	178, 340
DdeI	CTNAG	2 cut(s)	62, 343
DpnI	GATC	2 cut(s)	67, 324
DpnII	GATC	2 cut(s)	65, 322
Eco32I	GATATC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	57
EcoRV	GATATC	1 cut(s)	530
FaeI	CATG	1 cut(s)	561
FatI	CATG	1 cut(s)	557
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	155, 475
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	282
HapII	CCGG	1 cut(s)	457
Hin1II	CATG	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	2 cut(s)	72, 446
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	4 cut(s)	63, 76, 327, 381
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	418, 437, 557
HpyF3I	CTNAG	2 cut(s)	62, 343
Hsp92II	CATG	1 cut(s)	561
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	65, 322
LmnI	GCTCC	1 cut(s)	561
LpnPI	CCDG	7 cut(s)	176, 242, 246, 354, 470, 490, 559
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	67, 324
MboI	GATC	2 cut(s)	65, 322
MboII	GAAGA	2 cut(s)	16, 50
MluCI	AATT	3 cut(s)	268, 444, 506
MnlI	CCTC	6 cut(s)	151, 167, 254, 453, 507, 529
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	1 cut(s)	457
NdeII	GATC	2 cut(s)	65, 322
NlaIII	CATG	1 cut(s)	561
NspV	TTCGAA	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	548
PaqCI	CACCTGC	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	16
RsaI	GTAC	2 cut(s)	179, 341
RsaNI	GTAC	2 cut(s)	178, 340
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	65, 322
ScaI	AGTACT	1 cut(s)	341
SetI	ASST	7 cut(s)	16, 162, 172, 492, 521, 548, 566
SfaNI	GCATC	1 cut(s)	418
SfcI	CTRYAG	1 cut(s)	275
SfuI	TTCGAA	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	3 cut(s)	268, 444, 506
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	18
TaqI	TCGA	3 cut(s)	119, 409, 521
TasI	AATT	3 cut(s)	268, 444, 506
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	17, 165, 295
Vha464I	CTTAAG	1 cut(s)	500
XapI	RAATTY	3 cut(s)	268, 444, 506
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.