Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Forward (+)

49388698 .. 49391940

Gene Structure 3243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG274800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCTATTCTTGACCGCTTTTTTCGGTGTTTTGGCGGGTCGAAGCCAATAGAAAAGGCTACTACTCTCCAGCCTCTGGACTTGCATGATGATTTTAATGGCCTGGTTTTGAGATCAACATCAGATGAACGACCGATTCACCACACCGTAAAAATACGATCCTTTTCTTTGCTAAGAAATTTAATGGATAGATGCGAAGTAGGGGACTTCGAAGCTGGAGGATACAGATGGAGACTAGTGCTCTGCCCGAATGGAAACAAGAAGAGGAATGTGGAAGGCTACATCTCTCTCTACTTGGAAATGGCTGAAGAAAAACCAATCGAGCCCGACCAAATCGTAGCAATTGATTTTAGATTGTTTTTGCTTAATCAGAAGAAGAGCAACTACTTGGTTCTTGAGGATGCCAATAAAAAGGAGAAGAAGTATGTCTTTTATAGGACGATTGTCGGTGGTTCGGCTGGTTTCGATCAGTTTCTTCCTCTTGAAGAATTTACTGACGCCTCCAACGGTTATCTAATTGATGACACTTGTGAATTTGGCGCGGAGGTCTTTGTTTCTAAACAAGTAAGAACAGGAAAAGGAGAGTGTCTAGTGTCTATGATCAAAGATGTCACCAAGTACAAGCATGCTTGGAGCATTTCCAACTTTTCACAGTTGGCTGATGAACGCTATACCTCAAATCCGTTCTTTTTGACAGACCACAAATATTGCGAATGGAATCTACGACTCTATCCCAATGGATGTAATTGGGGAAATGGTAGTGGTCATATTTCTGTTTATGTGGAATTGGCCAATTTAAAATCTCTTCCTCCAGGCTCTAAAGTATTGGCAGAGTTTACCATACAAATCCTAGATCAAATCAATGGGAAGCATCATTCTACCAAAGCGTGTAAACGCTGGTTCGGTACCAGTCCCTCGACCTCGGGTTGGGGTTGCGCTCAATTCATCAGACAGGACTTGTTCAGAAACTCGGAGAAAGGATTGTTAGTGAGCGATTGTTGCATCGTGGAAACAGACATTAAAATCTGTGCGGTAGAACTCACAATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

350

Amino Acids

39.78

Weight (kDa)

6.71

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	47 - 183	4.8e-27	MATH domain
MATH	PF00917	53 - 185	2.4e-06	MATH domain
MATH_2	PF22486	208 - 340	6.1e-28	MATH domain
MATH	PF00917	213 - 342	1.2e-08	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	905
AccB1I	GGYRCC	1 cut(s)	905
AccB7I	CCANNNNNTGG	1 cut(s)	76
AccII	CGCG	1 cut(s)	542
AciI	CCGC	4 cut(s)	16, 36, 542, 1031
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	3 cut(s)	178, 488, 533
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	2 cut(s)	620, 907
AfiI	CCNNNNNNNGG	2 cut(s)	76, 927
AgsI	TTSAA	1 cut(s)	485
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	102, 811
AjuI	GAANNNNNNNTTGG	1 cut(s)	1029
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	922
AoxI	GGCC	2 cut(s)	100, 789
ApoI	RAATTY	3 cut(s)	178, 488, 533
Asp718I	GGTACC	1 cut(s)	905
AspLEI	GCGC	2 cut(s)	542, 938
AsuHPI	GGTGA	2 cut(s)	131, 604
AsuII	TTCGAA	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	922
BalI	TGGCCA	1 cut(s)	791
BanI	GGYRCC	1 cut(s)	905
BanII	GRGCYC	1 cut(s)	327
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
Bbv12I	GWGCWC	1 cut(s)	243
BccI	CCATC	1 cut(s)	222
BciT130I	CCWGG	2 cut(s)	104, 813
BciVI	GTATCC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	1 cut(s)	226
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	3 cut(s)	236, 590, 851
BfuI	GTATCC	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	104, 813
BmeT110I	CYCGRG	1 cut(s)	922
BmiI	GGNNCC	1 cut(s)	907
BmrFI	CCNGG	2 cut(s)	104, 813
BmsI	GCATC	4 cut(s)	182, 391, 880, 1011
BoxI	GACNNNNGTC	1 cut(s)	443
BpmI	CTGGAG	3 cut(s)	53, 237, 795
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	921
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 927
Bse1I	ACTGG	1 cut(s)	909
Bse8I	GATNNNNATC	1 cut(s)	118
BseBI	CCWGG	2 cut(s)	104, 813
BseDI	CCNNGG	1 cut(s)	921
BseGI	GGATG	2 cut(s)	406, 746
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	76, 927
BseNI	ACTGG	1 cut(s)	909
Bsh1236I	CGCG	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	102, 791
BshNI	GGYRCC	1 cut(s)	905
BsiEI	CGRYCG	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	922
BslFI	GGGAC	2 cut(s)	218, 897
BslI	CCNNNNNNNGG	2 cut(s)	76, 927
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	2 cut(s)	218, 897
BsnI	GGCC	2 cut(s)	102, 791
BsoBI	CYCGRG	1 cut(s)	922
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	243, 327
Bsp143I	GATC	5 cut(s)	113, 158, 466, 600, 853
BspACI	CCGC	4 cut(s)	16, 36, 542, 1031
BspANI	GGCC	2 cut(s)	102, 791
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	1 cut(s)	907
BspPI	GGATC	1 cut(s)	153
BspQI	GCTCTTC	1 cut(s)	371
BspT104I	TTCGAA	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	905
BsrI	ACTGG	1 cut(s)	909
BssECI	CCNNGG	1 cut(s)	921
BssMI	GATC	5 cut(s)	113, 158, 466, 600, 853
BssNI	GRCGYC	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	104, 813
Bst4CI	ACNGT	3 cut(s)	148, 509, 654
Bst6I	CTCTTC	3 cut(s)	257, 371, 810
BstACI	GRCGYC	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	406, 746
BstFNI	CGCG	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	542, 938
BstKTI	GATC	5 cut(s)	116, 161, 469, 603, 856
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	5 cut(s)	113, 158, 466, 600, 853
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	999
BstNI	CCWGG	2 cut(s)	104, 813
BstNSI	RCATGY	1 cut(s)	629
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSCI	CCNGG	2 cut(s)	102, 811
BstUI	CGCG	1 cut(s)	542
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	102, 791
BtsCI	GGATG	2 cut(s)	406, 746
Cac8I	GCNNGC	1 cut(s)	627
CaiI	CAGNNNCTG	1 cut(s)	76
CfoI	GCGC	2 cut(s)	542, 938
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	619, 906
CspCI	CAANNNNNGTGG	2 cut(s)	689, 724
CviAII	CATG	2 cut(s)	86, 626
CviQI	GTAC	2 cut(s)	619, 906
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	5 cut(s)	115, 160, 468, 602, 855
DpnII	GATC	5 cut(s)	113, 158, 466, 600, 853
DraI	TTTAAA	1 cut(s)	798
EaeI	YGGCCR	1 cut(s)	789
Eam1104I	CTCTTC	3 cut(s)	257, 371, 810
EarI	CTCTTC	3 cut(s)	257, 371, 810
Eco24I	GRGCYC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	922
EcoRII	CCWGG	2 cut(s)	102, 811
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	2 cut(s)	89, 629
FaiI	YATR	9 cut(s)	87, 426, 435, 599, 627, 672, 768, 780, 842
FalI	AAGNNNNNCTT	2 cut(s)	413, 445
FaqI	GGGAC	2 cut(s)	218, 897
FatI	CATG	2 cut(s)	85, 625
FauI	CCCGC	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	600
FokI	GGATG	2 cut(s)	413, 753
FriOI	GRGCYC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	236, 590, 851
GlaI	GCGC	2 cut(s)	541, 937
GsuI	CTGGAG	3 cut(s)	53, 237, 795
HaeIII	GGCC	2 cut(s)	102, 791
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	2 cut(s)	542, 938
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	2 cut(s)	89, 629
Hin6I	GCGC	2 cut(s)	540, 936
HinP1I	GCGC	2 cut(s)	540, 936
HinfI	GANTC	3 cut(s)	136, 718, 726
HphI	GGTGA	2 cut(s)	131, 604
Hpy166II	GTNNAC	2 cut(s)	837, 893
Hpy188I	TCNGA	5 cut(s)	124, 372, 950, 965, 973
Hpy188III	TCNNGA	4 cut(s)	11, 77, 395, 482
Hpy8I	GTNNAC	2 cut(s)	837, 893
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	3 cut(s)	148, 509, 654
HpyCH4V	TGCA	2 cut(s)	85, 1002
HpyF10VI	GCNNNNNNNGC	1 cut(s)	999
HpyF3I	CTNAG	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	89, 629
HspAI	GCGC	2 cut(s)	540, 936
KpnI	GGTACC	1 cut(s)	909
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	5 cut(s)	113, 158, 466, 600, 853
LguI	GCTCTTC	1 cut(s)	371
LmnI	GCTCC	1 cut(s)	633
LweI	GCATC	4 cut(s)	182, 391, 880, 1011
MaeI	CTAG	3 cut(s)	236, 590, 851
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	5 cut(s)	115, 160, 468, 602, 855
MboI	GATC	5 cut(s)	113, 158, 466, 600, 853
MboII	GAAGA	8 cut(s)	274, 320, 385, 388, 430, 467, 497, 797
MfeI	CAATTG	2 cut(s)	342, 1044
MhlI	GDGCHC	2 cut(s)	243, 327
MlsI	TGGCCA	1 cut(s)	791
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	2 cut(s)	528, 666
Mox20I	TGGCCA	1 cut(s)	791
MscI	TGGCCA	1 cut(s)	791
MseI	TTAA	6 cut(s)	96, 182, 366, 797, 1020, 1051
Msp20I	TGGCCA	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	104, 813
MunI	CAATTG	2 cut(s)	342, 1044
MvaI	CCWGG	2 cut(s)	104, 813
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	999
NdeII	GATC	5 cut(s)	113, 158, 466, 600, 853
NlaIII	CATG	2 cut(s)	89, 629
NlaIV	GGNNCC	1 cut(s)	907
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	629
NspV	TTCGAA	1 cut(s)	210
PaeI	GCATGC	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	136, 718
PflMI	CCANNNNNTGG	1 cut(s)	76
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PshAI	GACNNNNGTC	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	102, 811
PspGI	CCWGG	2 cut(s)	102, 811
PspN4I	GGNNCC	1 cut(s)	907
PstNI	CAGNNNCTG	1 cut(s)	76
RsaI	GTAC	2 cut(s)	620, 907
RsaNI	GTAC	2 cut(s)	619, 906
SapI	GCTCTTC	1 cut(s)	371
SaqAI	TTAA	6 cut(s)	96, 182, 366, 797, 1020, 1051
Sau3AI	GATC	5 cut(s)	113, 158, 466, 600, 853
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	2 cut(s)	104, 813
SduI	GDGCHC	2 cut(s)	243, 327
SetI	ASST	4 cut(s)	217, 549, 677, 923
SfaNI	GCATC	4 cut(s)	182, 391, 880, 1011
SfuI	TTCGAA	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SpeI	ACTAGT	1 cut(s)	235
SphI	GCATGC	1 cut(s)	629
SsiI	CCGC	4 cut(s)	16, 36, 542, 1031
SspI	AATATT	1 cut(s)	707
SspMI	CTAG	3 cut(s)	236, 590, 851
StyD4I	CCNGG	2 cut(s)	102, 811
TaaI	ACNGT	3 cut(s)	148, 509, 654
TaqI	TCGA	5 cut(s)	41, 210, 321, 465, 917
TaqII	GACCGA	1 cut(s)	148
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	136, 718
Tru1I	TTAA	6 cut(s)	96, 182, 366, 797, 1020, 1051
Tru9I	TTAA	6 cut(s)	96, 182, 366, 797, 1020, 1051
TseFI	GTSAC	1 cut(s)	610
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	3 cut(s)	141, 678, 934
TspGWI	ACGGA	1 cut(s)	672
Van91I	CCANNNNNTGG	1 cut(s)	76
XapI	RAATTY	3 cut(s)	178, 488, 533
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	3 cut(s)	236, 590, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.