Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00552

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

9631 .. 10724

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTTAATTTAGATGCCAATAAAAGGGAGAAGAAGTATGTCTTTTATAGGACGATTGTCGGTGGTTCGGCTGGTTTCGATCAGTTTCTTCCTCTTGAAGAATTTACTGACGCCTCCAACGGTTATCTAATTGATGACACTTGTGAATTTGGTGCGGAGGTCTTTGTTTCTAAACAAGTAAGAACAGGAAAACGAGAGTGTCTAGTGTCTATGATCAAAGATGTCACCAAGTACAAGCATGCTTGGAGCATTTCCAACTTTTCACAGTTGGCTGATGAAAGCTATACCTCAAATCCGTTATTTTTGACAGACCACAAATATTGCAAATGGAATCTACGACTCTATCCCAATGGAAGTAAGTGGGGAAATGGTAGTGGTCATATTTCTGTTTATGTGGAATTGGCCAATTTAAAATCTCTTCCTCCAGGCTCTAAAGTATTGGCAGAGTTTACCATACAAATAATAGATCAAATCAATGGGAAGCATCATTCTACCAAAGAGACTATGTGGCCAGCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

173

Amino Acids

19.68

Weight (kDa)

8.36

Isoelectric Point (pI)

23.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	79 - 167	1.2e-16	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AcoI	YGGCCR	2 cut(s)	402, 509
AcsI	RAATTY	2 cut(s)	101, 146
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	2 cut(s)	282, 515
AluI	AGCT	2 cut(s)	282, 515
Alw26I	GTCTC	1 cut(s)	494
AoxI	GGCC	2 cut(s)	402, 509
ApoI	RAATTY	2 cut(s)	101, 146
AsuHPI	GGTGA	1 cut(s)	217
BalI	TGGCCA	2 cut(s)	404, 511
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	2 cut(s)	4, 493
BoxI	GACNNNNGTC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	404, 511
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	404, 511
Bsp143I	GATC	3 cut(s)	79, 213, 466
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	404, 511
BssMI	GATC	3 cut(s)	79, 213, 466
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	122, 267
Bst6I	CTCTTC	1 cut(s)	423
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	240, 513
BstKTI	GATC	3 cut(s)	82, 216, 469
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	3 cut(s)	79, 213, 466
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	242
BstPAI	GACNNNNGTC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	424
BsuRI	GGCC	2 cut(s)	404, 511
Cac8I	GCNNGC	2 cut(s)	240, 513
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	232
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	7 cut(s)	71, 272, 282, 404, 429, 511, 515
CviKI_1	RGCY	7 cut(s)	71, 272, 282, 404, 429, 511, 515
CviQI	GTAC	1 cut(s)	232
DpnI	GATC	3 cut(s)	81, 215, 468
DpnII	GATC	3 cut(s)	79, 213, 466
DraI	TTTAAA	1 cut(s)	411
EaeI	YGGCCR	2 cut(s)	402, 509
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	424
FaeI	CATG	1 cut(s)	242
FaiI	YATR	9 cut(s)	39, 48, 212, 240, 285, 381, 393, 455, 506
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	213
FspBI	CTAG	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	2 cut(s)	404, 511
HgaI	GACGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	242
HinfI	GANTC	2 cut(s)	331, 339
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	450
HpyCH4III	ACNGT	2 cut(s)	122, 267
HpyCH4V	TGCA	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	79, 213, 466
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	4 cut(s)	57, 171, 411, 438
LweI	GCATC	2 cut(s)	4, 493
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	81, 215, 468
MboI	GATC	3 cut(s)	79, 213, 466
MboII	GAAGA	4 cut(s)	43, 80, 110, 410
MlsI	TGGCCA	2 cut(s)	404, 511
MluCI	AATT	6 cut(s)	7, 101, 129, 146, 398, 406
MluNI	TGGCCA	2 cut(s)	404, 511
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	141, 279
MnlI	CCTC	5 cut(s)	102, 124, 151, 298, 432
Mox20I	TGGCCA	2 cut(s)	404, 511
MscI	TGGCCA	2 cut(s)	404, 511
MseI	TTAA	3 cut(s)	6, 410, 520
Msp20I	TGGCCA	2 cut(s)	404, 511
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	79, 213, 466
NlaIII	CATG	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PshAI	GACNNNNGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	3 cut(s)	6, 410, 520
Sau3AI	GATC	3 cut(s)	79, 213, 466
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	426
SetI	ASST	4 cut(s)	162, 284, 290, 517
SfaNI	GCATC	2 cut(s)	4, 493
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	6 cut(s)	7, 101, 129, 146, 398, 406
SsiI	CCGC	1 cut(s)	155
SspI	AATATT	1 cut(s)	320
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	122, 267
TaqI	TCGA	1 cut(s)	78
TasI	AATT	6 cut(s)	7, 101, 129, 146, 398, 406
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	6, 410, 520
Tru9I	TTAA	3 cut(s)	6, 410, 520
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	285
XapI	RAATTY	2 cut(s)	101, 146
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.